mRNA_P-wetherbeei_contig6616.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6616.1.1
Unique NamemRNA_P-wetherbeei_contig6616.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6616.1.1 vs. uniprot
Match: A0A7S0AE60_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0AE60_9DINO)

HSP 1 Score: 57.0 bits (136), Expect = 9.530e-5
Identity = 40/116 (34.48%), Postives = 63/116 (54.31%), Query Frame = 1 
Query: 1327 VAVHVRLGDI----LVKLAAWD---RLHLDIGCWQIPSLEAVRAVVRPTCIQMTLITDGNATHPDVAGIFRRFPDLDIRL----MGDDVPARPAYEEMLAADVLVAGKSGFSSSAA 1641
            V +HVRLGDI      +  A++   +L++D     I +L+A+  V+ P C++++L+TDG  T PD+  + +   +  I        + + A  A+E M  ADVLV G SGF   AA
Sbjct:  261 VVMHVRLGDIENNCSARFTAYNCNKKLNVD---QYILTLQALVEVLPPHCMELSLVTDGQLTSPDIVYVLKNLTNSGIPKPQVWTANQLDAEGAFEFMTHADVLVYGPSGFGQLAA 373
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6616.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S0AE60_9DINO9.530e-534.48Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6616contigP-wetherbeei_contig6616:253..2544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2292
Hectar predicted targeting categoryother localisation
Exons1
Cds size1239
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186925.7469504-UTR-P-wetherbeei_contig6616:252..9001683186925.7469504-UTR-P-wetherbeei_contig6616:252..900Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6616 253..900 +
1683186925.7654574-UTR-P-wetherbeei_contig6616:2139..25441683186925.7654574-UTR-P-wetherbeei_contig6616:2139..2544Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6616 2140..2544 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186925.7573025-CDS-P-wetherbeei_contig6616:900..21391683186925.7573025-CDS-P-wetherbeei_contig6616:900..2139Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6616 901..2139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6616.1.1prot_P-wetherbeei_contig6616.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6616 901..2139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6616.1.1

>prot_P-wetherbeei_contig6616.1.1 ID=prot_P-wetherbeei_contig6616.1.1|Name=mRNA_P-wetherbeei_contig6616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=413bp
MDMPARWKPSPAGRRQQRRPPGRGPDDGGRRVLGVRGTAEVEIDAAAAVA
PAAAVAPAAAAPAAAMAAAAATAEAGGAMHGRALAATFDWSQCKSGVVLV
PPDVLVWKKSGLDTTVAGQLLKDRFYAARILAGKAMPPATSASSVPPQKQ
LPAPPTPWTAVPETLSSSDLPVPQLLPAALPVPTSPEITVLGGVPAVGAM
TVVSEPSAGPLPPLPLSPPPEPPVVSVAVHVRLGDILVKLAAWDRLHLDI
GCWQIPSLEAVRAVVRPTCIQMTLITDGNATHPDVAGIFRRFPDLDIRLM
GDDVPARPAYEEMLAADVLVAGKSGFSSSAAAFRRAGIAVVPAGAEFPLQ
TSETVFAIPHGVCNGGGGGIAGKDMATAPLSAGWGDDTRNSAIRAIATAL
ENHPAMPACRIP*
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mRNA from alignment at P-wetherbeei_contig6616:253..2544+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6616.1.1 ID=mRNA_P-wetherbeei_contig6616.1.1|Name=mRNA_P-wetherbeei_contig6616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2292bp|location=Sequence derived from alignment at P-wetherbeei_contig6616:253..2544+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGCTTGACTATCCCTCACCGCGCATCGCTGTGTATCGGCTTCGACCCT
CGAACTCCCACTTTGAATGGAGTAGGCGACGGCATCGGTAAGAGGCCGGT
CTGGTCTGTGAGTTATAAAAAGATTGGGTTCCATTTCTTCAAGACTTTGC
AAGAGGGGAGCGAACCTCTGAGCTGGGACGGCTGTTGGCTGATATTTGCG
TTCGGGCAGGTGAAGGGTGAAGGGCGCTTTTTAGGCTTTTGAATGAGGTG
CACGGACTTGGGTTGGTGTGTGTAGGATATGCGCTACTGGAGATTAAGAA
GAGAGGGACTGACCCAAGATAAGAGGAGAGATGACATGTCCGTCTGTCTT
AGCGAGGGTGTTGCTAACGTCCTCCGCATCTTTGTAACTTATTGCAAAAC
CGAGACCCCGCGTTTCCTCCCTCTCTCTGGCAGGCACGTTCCAAAACCTG
GTGAACTTCACGCTTGATGTAGGTGCCATTCCTTTCTTCGGGCCGTTCAG
GCCGGCGGACCACGGTATCGGCGACAGCTTTGCCGATCTCTTCGGGGCGC
CGGACCTCGATTCGCTGGACGGCCTCGGCCCCGGTGTCTACTTTGTCACG
CTCAAGTGGGCACGCGTTGGCCGCGGCACGTGTCCGGATCCCGGGGCGAT
GGACATGCCGGCCCGCTGGAAACCATCGCCAGCCGGCCGCCGGCAGCAGC
GCCGCCCGCCGGGCCGGGGGCCGGACGACGGCGGGCGGCGGGTGCTCGGG
GTCAGAGGCACGGCAGAAGTTGAAATCGATGCGGCGGCGGCGGTGGCCCC
AGCGGCGGCGGTGGCCCCGGCTGCGGCGGCCCCGGCGGCGGCGATGGCGG
CGGCTGCGGCGACGGCAGAGGCCGGCGGGGCGATGCATGGTCGTGCTCTG
GCGGCAACCTTCGACTGGTCCCAATGTAAGAGCGGCGTCGTGCTCGTCCC
GCCTGACGTGCTCGTATGGAAGAAGTCCGGGCTGGACACGACTGTCGCCG
GACAGCTCCTGAAAGATCGTTTCTATGCAGCCCGCATCTTGGCGGGGAAA
GCCATGCCGCCGGCAACTTCAGCGTCGTCGGTCCCGCCGCAGAAGCAGCT
GCCTGCACCACCCACGCCCTGGACGGCGGTGCCGGAGACGCTTTCCTCGT
CAGACCTGCCGGTGCCGCAGCTGCTGCCTGCGGCGCTTCCGGTCCCGACG
TCGCCGGAAATTACTGTCCTGGGAGGGGTTCCGGCGGTGGGGGCGATGAC
GGTGGTAAGTGAGCCATCGGCTGGTCCGCTGCCGCCGCTGCCGCTGTCAC
CACCGCCGGAGCCACCGGTGGTGTCCGTGGCCGTCCACGTCCGACTGGGG
GATATCTTGGTGAAGCTGGCTGCGTGGGACCGGCTGCACCTCGACATCGG
CTGCTGGCAGATCCCCTCACTGGAGGCGGTCCGGGCGGTGGTGCGCCCCA
CCTGTATTCAGATGACGCTTATCACCGACGGCAACGCCACGCACCCCGAC
GTCGCCGGCATCTTCCGCCGCTTCCCCGACTTAGACATCCGGCTCATGGG
GGACGACGTGCCTGCGAGGCCCGCCTACGAGGAGATGTTGGCGGCGGACG
TGCTCGTCGCAGGCAAGAGCGGCTTCAGCAGCTCCGCCGCGGCGTTCCGG
CGCGCCGGCATCGCCGTTGTGCCCGCTGGCGCCGAGTTCCCACTGCAGAC
GTCCGAGACGGTATTCGCCATCCCGCACGGCGTCTGCAATGGCGGCGGCG
GCGGCATCGCCGGCAAGGACATGGCGACGGCGCCGCTTTCAGCTGGCTGG
GGCGACGATACCCGTAATAGCGCCATTAGGGCCATTGCGACAGCGCTGGA
AAACCATCCGGCGATGCCGGCGTGCAGAATCCCGTGACAGGATTGGCACG
TCCACCGCTCGATGCCGCCCGGTTCATTCCCTTGCTGGCTCTCGGAGACA
CGGCATTCCGCGGCGCTTTTGCTTCTACTTCTCCACATGGAAGGCAAGGG
GGGAGAAGTAGATTTGTTTCTTTGTCAATTTTGCCGACAAGCGGTGCCGG
CTGTTTGTGAGGCCGGTTCGAGCGCCTCCAGAAACGGGACTCGGCCGGCA
GCCTGAATTCCACCGTCTGTTGTGTTGTATTCTACACGGGCGTTCGTCGG
TGGGTGGCGGGAGTGAGCCTTGCGCTCATTCCGCTGCCTGGCCAGATCCA
TCCTGCGCGCCGACTGGAGCCGTTAAGCAGGCCGGACCGCGCTGTATGCG
CGCCCATCCATTCCTTCCTTTAAGAGCACATTCCTTCATCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6616:253..2544+

>mRNA_P-wetherbeei_contig6616.1.1 ID=mRNA_P-wetherbeei_contig6616.1.1|Name=mRNA_P-wetherbeei_contig6616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1239bp|location=Sequence derived from alignment at P-wetherbeei_contig6616:253..2544+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACATGCCGGCCCGCTGGAAACCATCGCCAGCCGGCCGCCGGCAGCA
GCGCCGCCCGCCGGGCCGGGGGCCGGACGACGGCGGGCGGCGGGTGCTCG
GGGTCAGAGGCACGGCAGAAGTTGAAATCGATGCGGCGGCGGCGGTGGCC
CCAGCGGCGGCGGTGGCCCCGGCTGCGGCGGCCCCGGCGGCGGCGATGGC
GGCGGCTGCGGCGACGGCAGAGGCCGGCGGGGCGATGCATGGTCGTGCTC
TGGCGGCAACCTTCGACTGGTCCCAATGTAAGAGCGGCGTCGTGCTCGTC
CCGCCTGACGTGCTCGTATGGAAGAAGTCCGGGCTGGACACGACTGTCGC
CGGACAGCTCCTGAAAGATCGTTTCTATGCAGCCCGCATCTTGGCGGGGA
AAGCCATGCCGCCGGCAACTTCAGCGTCGTCGGTCCCGCCGCAGAAGCAG
CTGCCTGCACCACCCACGCCCTGGACGGCGGTGCCGGAGACGCTTTCCTC
GTCAGACCTGCCGGTGCCGCAGCTGCTGCCTGCGGCGCTTCCGGTCCCGA
CGTCGCCGGAAATTACTGTCCTGGGAGGGGTTCCGGCGGTGGGGGCGATG
ACGGTGGTAAGTGAGCCATCGGCTGGTCCGCTGCCGCCGCTGCCGCTGTC
ACCACCGCCGGAGCCACCGGTGGTGTCCGTGGCCGTCCACGTCCGACTGG
GGGATATCTTGGTGAAGCTGGCTGCGTGGGACCGGCTGCACCTCGACATC
GGCTGCTGGCAGATCCCCTCACTGGAGGCGGTCCGGGCGGTGGTGCGCCC
CACCTGTATTCAGATGACGCTTATCACCGACGGCAACGCCACGCACCCCG
ACGTCGCCGGCATCTTCCGCCGCTTCCCCGACTTAGACATCCGGCTCATG
GGGGACGACGTGCCTGCGAGGCCCGCCTACGAGGAGATGTTGGCGGCGGA
CGTGCTCGTCGCAGGCAAGAGCGGCTTCAGCAGCTCCGCCGCGGCGTTCC
GGCGCGCCGGCATCGCCGTTGTGCCCGCTGGCGCCGAGTTCCCACTGCAG
ACGTCCGAGACGGTATTCGCCATCCCGCACGGCGTCTGCAATGGCGGCGG
CGGCGGCATCGCCGGCAAGGACATGGCGACGGCGCCGCTTTCAGCTGGCT
GGGGCGACGATACCCGTAATAGCGCCATTAGGGCCATTGCGACAGCGCTG
GAAAACCATCCGGCGATGCCGGCGTGCAGAATCCCGTGA
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