mRNA_P-wetherbeei_contig66.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig66.4.1
Unique NamemRNA_P-wetherbeei_contig66.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig66.4.1 vs. uniprot
Match: D8LNP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP5_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 3.710e-14
Identity = 37/81 (45.68%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 LAQRLATADLQGAYMRVARAAAASYIGVAGVVIRETVNTFELVTPPPRSRCKTVRKQGCVFELAVGDCICSLQGSLMVGRQ 243
            L QR+ +ADLQG Y+ V+RA+A+S + VAG+V+RE  NTF+LVTP  ++   T+ K+ C   LA  D + +L G  ++GR+
Sbjct:  105 LQQRILSADLQGCYLTVSRASASSLVNVAGIVLREAANTFQLVTPAGKTL--TIPKRSCAVRLAFADRVVTLDGGALMGRR 183          
BLAST of mRNA_P-wetherbeei_contig66.4.1 vs. uniprot
Match: A0A6H5K6H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H7_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 4.520e-12
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 LAQRLATADLQGAYMRVARAAAASYIGVAGVVIRETVNTFELVTPPPRSRCKTVRKQGCVFELAVGDCICSLQGSLMVGRQ 243
            L QR  +A+LQG Y+ V+RA+ +S + VAG+V+RETVN F+LVTP    +  T+ K+ C   LA GD + +  G  ++GR+
Sbjct: 1222 LQQRTLSAELQGCYLTVSRASVSSLVNVAGIVLRETVNIFQLVTPA--GKMLTIPKRSCAVRLAFGDRMVTRNGGTLMGRR 1300          
BLAST of mRNA_P-wetherbeei_contig66.4.1 vs. uniprot
Match: A0A1Y1IMU1_KLENI (Ribonuclease P family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMU1_KLENI)

HSP 1 Score: 59.3 bits (142), Expect = 1.500e-8
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 LAQRLATADLQGAYMRVARAAAASYIGVAGVVIRETVNTFELVTPPPRSRCKTVRKQGCVFELAVGDCICSLQGSLMV 234
            L  RL TAD  GA++ V+ +   +YIG  G+++RET NTF++VT   ++R + V K+G +F++ +G+ + SL G+ +V
Sbjct:  180 LMSRLLTADYHGAFLSVSASKDPTYIGTEGLIVRETQNTFQMVTT--QNRLQVVPKRGSIFQMKLGNNLVSLFGNQIV 255          
BLAST of mRNA_P-wetherbeei_contig66.4.1 vs. uniprot
Match: A0A6A7C131_9PEZI (Ribonuclease P protein subunit n=1 Tax=Piedraia hortae CBS 480.64 TaxID=1314780 RepID=A0A6A7C131_9PEZI)

HSP 1 Score: 54.7 bits (130), Expect = 4.400e-7
Identity = 25/70 (35.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   13 LATADLQGAYMRVARAAAASYIGVAGVVIRETVNTFELVTPPPRSRCKTVRKQGCVFELAVGDCICSLQG 222
            L TAD  GA + V ++   S +G+ G+V+++T+ TFE+VT   + + K + K+G +F + +G+C+  L G
Sbjct:  119 LLTADYHGALITVVKSTCPSRVGIRGIVVKDTMFTFEVVTK--KDQLKVLPKEGSIFRVIIGECVVELNG 186          
BLAST of mRNA_P-wetherbeei_contig66.4.1 vs. uniprot
Match: A0A2G8KGC1_STIJA (Ribonuclease P protein subunit p29 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KGC1_STIJA)

HSP 1 Score: 52.4 bits (124), Expect = 3.130e-6
Identity = 24/71 (33.80%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   10 RLATADLQGAYMRVARAAAASYIGVAGVVIRETVNTFELVTPPPRSRCKTVRKQGCVFELAVGDCICSLQG 222
            +L   DL G++M+V ++   +YIG+ G++++ET NTF+++T     + KTV K  C F   V + + ++ G
Sbjct:  113 KLLKCDLHGSFMKVTKSTCPTYIGMCGILLQETKNTFKIITQA--DQLKTVPKANCEFTFVVDELVVTIHG 181          
BLAST of mRNA_P-wetherbeei_contig66.4.1 vs. uniprot
Match: A0A6B2LNY3_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LNY3_9EUKA)

HSP 1 Score: 50.8 bits (120), Expect = 3.280e-6
Identity = 28/80 (35.00%), Postives = 45/80 (56.25%), Query Frame = 1
Query:    1 LAQRLATADLQGAYMRVARAAAASYIGVAGVVIRETVNTFELVTPPPRSRCKTVRKQGCVFELAVGDCICSLQGSLMVGR 240
            L  +L  AD  G  + V ++   S +G+ G+VI+ET NTF+L+T    +  K V K+  VF     + +C+L G+L + R
Sbjct:   21 LKAKLTRADFHGCILSVIKSQTPSSVGITGIVIKETQNTFQLITK--ENTLKVVMKRDTVFTFVYENNLCTLYGNLFLVR 98          
BLAST of mRNA_P-wetherbeei_contig66.4.1 vs. uniprot
Match: A0A2G8KG20_STIJA (Ribonuclease P protein subunit p29 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KG20_STIJA)

HSP 1 Score: 52.4 bits (124), Expect = 3.450e-6
Identity = 24/71 (33.80%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   10 RLATADLQGAYMRVARAAAASYIGVAGVVIRETVNTFELVTPPPRSRCKTVRKQGCVFELAVGDCICSLQG 222
            +L   DL G++M+V ++   +YIG+ G++++ET NTF+++T     + KTV K  C F   V + + ++ G
Sbjct:  124 KLLKCDLHGSFMKVTKSTCPTYIGMCGILLQETKNTFKIITQT--DQLKTVPKANCEFTFVVDELVVTIHG 192          
BLAST of mRNA_P-wetherbeei_contig66.4.1 vs. uniprot
Match: J9M4K8_ACYPI (Ribonuclease P protein subunit p29 n=8 Tax=Aphidinae TaxID=133076 RepID=J9M4K8_ACYPI)

HSP 1 Score: 51.6 bits (122), Expect = 7.140e-6
Identity = 30/72 (41.67%), Postives = 41/72 (56.94%), Query Frame = 1
Query:   25 DLQGAYMRVARAAAASYIGVAGVVIRETVNTFELVTPPPRSRCKTVRKQGCVFELAVGDCICSLQGSLMVGR 240
            D  GA+++V  +   SYI VAGV+I ET NTF+++     ++ KTV K  C+FEL     I  L G   V R
Sbjct:  140 DFHGAHIKVVSSKCCSYISVAGVIILETKNTFQIIGVD--NKLKTVPKDQCIFELEFEGYIIQLYGKHFVVR 209          
BLAST of mRNA_P-wetherbeei_contig66.4.1 vs. uniprot
Match: UPI0014584726 (ribonuclease P protein subunit p29-like isoform X1 n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI0014584726)

HSP 1 Score: 51.6 bits (122), Expect = 7.550e-6
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 1
Query:    7 QRLATADLQGAYMRVARAAAASYIGVAGVVIRETVNTFELVTPPPRSRCKTVRKQGCVFELAVGD 201
            QRL  ADL G+ + V R+   SY+GV G++++ET NTF L+T   + +C  + KQ  VF   +G 
Sbjct:  143 QRLLKADLHGSLLTVQRSKCPSYVGVTGIILQETRNTFLLITKENKVKC--IPKQHSVFTFMLGS 205          
BLAST of mRNA_P-wetherbeei_contig66.4.1 vs. uniprot
Match: A0A7J4B3P9_9ARCH (Ribonuclease P protein component 1 n=1 Tax=Candidatus Micrarchaeota archaeon TaxID=2250274 RepID=A0A7J4B3P9_9ARCH)

HSP 1 Score: 48.9 bits (115), Expect = 1.190e-5
Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   25 DLQGAYMRVARAAAASYIGVAGVVIRETVNTFELVTPPPRSRCKTVRKQGCVFELAVGD 201
            ++ G  ++V  +A+ SYIG++GVV+ ET+NTF + TP    + K V K+ CVFE  + D
Sbjct:   11 EIIGLKVKVVSSASKSYIGISGVVLDETLNTFVIETP--ERKLKRVPKKNCVFEFTLPD 67          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig66.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNP5_ECTSI3.710e-1445.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6H7_9PHAE4.520e-1244.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y1IMU1_KLENI1.500e-839.74Ribonuclease P family protein n=1 Tax=Klebsormidiu... [more]
A0A6A7C131_9PEZI4.400e-735.71Ribonuclease P protein subunit n=1 Tax=Piedraia ho... [more]
A0A2G8KGC1_STIJA3.130e-633.80Ribonuclease P protein subunit p29 n=1 Tax=Stichop... [more]
A0A6B2LNY3_9EUKA3.280e-635.00Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A2G8KG20_STIJA3.450e-633.80Ribonuclease P protein subunit p29 n=1 Tax=Stichop... [more]
J9M4K8_ACYPI7.140e-641.67Ribonuclease P protein subunit p29 n=8 Tax=Aphidin... [more]
UPI00145847267.550e-641.54ribonuclease P protein subunit p29-like isoform X1... [more]
A0A7J4B3P9_9ARCH1.190e-542.37Ribonuclease P protein component 1 n=1 Tax=Candida... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig66contigP-wetherbeei_contig66:15321..15563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LNP5
Preferred namePOP4
PFAMsUPF0086
Model size243
Max annot lvl2759|Eukaryota
KEGG koko:K03538
KEGG Pathwayko03008,ko03013,map03008,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000172,GO:0000294,GO:0000956,GO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005655,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0019222,GO:0019439,GO:0019843,GO:0022613,GO:0030677,GO:0030681,GO:0031070,GO:0031974,GO:0031981,GO:0032991,GO:0033204,GO:0033967,GO:0034470,GO:0034471,GO:0034641,GO:0034655,GO:0034660,GO:0034963,GO:0034965,GO:0042134,GO:0042254,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0099116,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1902555,GO:1905348,GO:1990904
Exons1
Evalue6.09e-15
EggNOG OGsKOG4046@1|root,KOG4046@2759|Eukaryota
Ec32 ortholog descriptionRibonuclease P/MRP, subunit p29
Ec32 orthologEc-08_006350.1
EC3.1.26.5
Descriptionribonuclease P RNA binding
Cds size243
COG categoryP
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186924.6364667-CDS-P-wetherbeei_contig66:15320..155631683186924.6364667-CDS-P-wetherbeei_contig66:15320..15563Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig66 15321..15563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig66.4.1prot_P-wetherbeei_contig66.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig66 15321..15563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig66.4.1

>prot_P-wetherbeei_contig66.4.1 ID=prot_P-wetherbeei_contig66.4.1|Name=mRNA_P-wetherbeei_contig66.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
LAQRLATADLQGAYMRVARAAAASYIGVAGVVIRETVNTFELVTPPPRSR
CKTVRKQGCVFELAVGDCICSLQGSLMVGRQ
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mRNA from alignment at P-wetherbeei_contig66:15321..15563-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig66.4.1 ID=mRNA_P-wetherbeei_contig66.4.1|Name=mRNA_P-wetherbeei_contig66.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig66:15321..15563- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCGCAGCGGCTGGCCACCGCCGACCTGCAGGGTGCCTACATGCGAGT GGCGCGGGCGGCGGCGGCGAGCTACATCGGCGTCGCCGGCGTCGTCATTC GAGAGACCGTCAACACGTTCGAACTGGTGACGCCGCCGCCGCGCAGTCGC TGCAAGACGGTGCGGAAACAGGGCTGCGTCTTTGAGCTGGCGGTTGGCGA CTGTATCTGCTCGCTGCAGGGTTCGCTGATGGTCGGGAGGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig66:15321..15563-

>mRNA_P-wetherbeei_contig66.4.1 ID=mRNA_P-wetherbeei_contig66.4.1|Name=mRNA_P-wetherbeei_contig66.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig66:15321..15563- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCGCAGCGGCTGGCCACCGCCGACCTGCAGGGTGCCTACATGCGAGT
GGCGCGGGCGGCGGCGGCGAGCTACATCGGCGTCGCCGGCGTCGTCATTC
GAGAGACCGTCAACACGTTCGAACTGGTGACGCCGCCGCCGCGCAGTCGC
TGCAAGACGGTGCGGAAACAGGGCTGCGTCTTTGAGCTGGCGGTTGGCGA
CTGTATCTGCTCGCTGCAGGGTTCGCTGATGGTCGGGAGGCAG
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