mRNA_P-wetherbeei_contig1275.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1275.3.1
Unique NamemRNA_P-wetherbeei_contig1275.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A3C0TUX7_9PROT (Putative membrane protein insertion efficiency factor n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TUX7_9PROT)

HSP 1 Score: 138 bits (348), Expect = 9.670e-41
Identity = 59/83 (71.08%), Postives = 69/83 (83.13%), Query Frame = 1
Query:    4 MLKIIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGRW 252
            +L +IR+YQL LSP +G SCR+ PTCS Y A AI++ GAW GFWLGLSR+CRCHPWG QG+D VPE+LEMRYGIL  WRYGRW
Sbjct:   17 LLFLIRVYQLTLSPFIGNSCRHIPTCSHYTAGAIRRFGAWRGFWLGLSRVCRCHPWGSQGLDPVPEKLEMRYGILSAWRYGRW 99          
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A2A5ET36_9HYPH (Putative membrane protein insertion efficiency factor n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5ET36_9HYPH)

HSP 1 Score: 117 bits (292), Expect = 4.160e-32
Identity = 52/84 (61.90%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    4 MLKIIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGRWS 255
            +L +++LY+  LSPLLGP CR+ PTCS+YA IA+Q HGAW G WL LSRI RCHPWG +G D VPERLE +      WRYG WS
Sbjct:   10 LLGLVQLYRWTLSPLLGPKCRHLPTCSEYALIAVQSHGAWRGGWLALSRITRCHPWGSRGFDPVPERLEAQP-FYAPWRYGHWS 92          
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A7S8C0S1_9HYPH (Putative membrane protein insertion efficiency factor n=1 Tax=Kaustia mangrovi TaxID=2593653 RepID=A0A7S8C0S1_9HYPH)

HSP 1 Score: 112 bits (279), Expect = 4.580e-30
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    4 MLKIIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGRWS-RHSNE 270
            ML +IRLYQL LS ++G +CR+ P+CS+YAA A+++HGAW GFWLG SR+ RCHPWG  G+D VP+ L         WRYGRW+ RH  E
Sbjct:   23 MLGLIRLYQLTLSAVMGRTCRHMPSCSEYAAEAVRRHGAWRGFWLGFSRVARCHPWGSHGLDPVPDSLPDHGWRF--WRYGRWTGRHITE 110          
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A2N3EAR9_9PROT (Putative membrane protein insertion efficiency factor n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11 TaxID=2013657 RepID=A0A2N3EAR9_9PROT)

HSP 1 Score: 110 bits (275), Expect = 1.430e-29
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   13 IIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGRW 252
            +IR YQ  +SPLLGPSCR+ PTCS Y   A+++HG W GFWLGL+RI RCHP+G  G D VPERL+ +  +   WRYGRW
Sbjct:   13 LIRFYQWFISPLLGPSCRHLPTCSDYTMQAMERHGGWRGFWLGLARIARCHPYGSHGFDPVPERLDDQP-LWAPWRYGRW 91          
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A2S9Q5A3_9HYPH (Putative membrane protein insertion efficiency factor n=3 Tax=Labrys TaxID=204476 RepID=A0A2S9Q5A3_9HYPH)

HSP 1 Score: 107 bits (268), Expect = 1.400e-28
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 1
Query:   13 IIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGR 249
            +IR YQ+ LS L+G  CRY P+CS+YA  AI++HG W G W+GL+RICRCHPWGG G+D VPERL       + WRY R
Sbjct:   11 VIRTYQVTLSALIGRQCRYFPSCSEYADEAIERHGLWAGGWMGLARICRCHPWGGSGLDPVPERLPADTSWYRPWRYRR 89          
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A2N3E9R4_9PROT (Putative membrane protein insertion efficiency factor n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3E9R4_9PROT)

HSP 1 Score: 107 bits (268), Expect = 1.620e-28
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query:   13 IIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGRW 252
            +I+ YQ  +SPLLGPSCR+ PTCS Y A A+++HG W G WLGLSR+ RCHPWG  G D VP++L  +      WRYGRW
Sbjct:   13 LIKAYQWFISPLLGPSCRHLPTCSDYVAQAVERHGPWRGGWLGLSRVLRCHPWGSHGFDPVPDKLAPQP-FWAPWRYGRW 91          
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A5C1WFF2_9HYPH (Putative membrane protein insertion efficiency factor n=1 Tax=Labrys sp. KNU-23 TaxID=2789216 RepID=A0A5C1WFF2_9HYPH)

HSP 1 Score: 106 bits (265), Expect = 4.000e-28
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   13 IIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGR 249
            +IR YQ+ LS L+G  CRY P+CS+YA  AI++HG W G W+G+ RICRCHPWG  G+D VPERL       + WRYGR
Sbjct:   11 VIRTYQVTLSALIGRQCRYFPSCSEYADEAIERHGVWAGGWMGVFRICRCHPWGSSGLDPVPERLPADTSWYRPWRYGR 89          
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A2N5XW30_9HYPH (Putative membrane protein insertion efficiency factor n=1 Tax=Cohaesibacter celericrescens TaxID=2067669 RepID=A0A2N5XW30_9HYPH)

HSP 1 Score: 106 bits (264), Expect = 6.190e-28
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   13 IIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGRW 252
            +I+LYQ+ LSP +G  CRYQPTCS Y   +I+++G W G W+G++RICRCHPWG  G D VPERL       + WRYG W
Sbjct:    8 LIKLYQIFLSPFMGRQCRYQPTCSHYTEGSIRRYGFWIGSWIGIARICRCHPWGYSGFDPVPERLPQDACWYKPWRYGLW 87          
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A212Q9H7_RHOAC (Putative membrane protein insertion efficiency factor n=1 Tax=Rhodoblastus acidophilus TaxID=1074 RepID=A0A212Q9H7_RHOAC)

HSP 1 Score: 105 bits (263), Expect = 1.020e-27
Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   13 IIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGRWSR 258
            +IR YQL LS L+G  CRY PTCS Y   A+ +HG W G W+GLSR+CRCHPWG  G D VP+ +      L+ WRYG W R
Sbjct:   15 LIRFYQLTLSGLIGRQCRYLPTCSAYMDEALDRHGLWAGGWMGLSRLCRCHPWGDSGFDPVPKTVSPGADPLRPWRYGHWRR 96          
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A1E3H0E6_9HYPH (Putative membrane protein insertion efficiency factor n=2 Tax=Methylobrevis pamukkalensis TaxID=1439726 RepID=A0A1E3H0E6_9HYPH)

HSP 1 Score: 105 bits (262), Expect = 1.860e-27
Identity = 45/80 (56.25%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   16 IRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGRWS 255
            IR YQL +S  +G  CRY PTCS+Y   AI++HG WPG W+GL+RI RCHPW   G D  PERL  RY     WR G WS
Sbjct:   32 IRTYQLTISGFIGRQCRYLPTCSEYTDDAIRRHGVWPGIWIGLARILRCHPWSPSGFDPAPERLSPRYRWYAPWRAGIWS 111          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TUX7_9PROT9.670e-4171.08Putative membrane protein insertion efficiency fac... [more]
A0A2A5ET36_9HYPH4.160e-3261.90Putative membrane protein insertion efficiency fac... [more]
A0A7S8C0S1_9HYPH4.580e-3056.67Putative membrane protein insertion efficiency fac... [more]
A0A2N3EAR9_9PROT1.430e-2960.00Putative membrane protein insertion efficiency fac... [more]
A0A2S9Q5A3_9HYPH1.400e-2858.23Putative membrane protein insertion efficiency fac... [more]
A0A2N3E9R4_9PROT1.620e-2857.50Putative membrane protein insertion efficiency fac... [more]
A0A5C1WFF2_9HYPH4.000e-2856.96Putative membrane protein insertion efficiency fac... [more]
A0A2N5XW30_9HYPH6.190e-2855.00Putative membrane protein insertion efficiency fac... [more]
A0A212Q9H7_RHOAC1.020e-2754.88Putative membrane protein insertion efficiency fac... [more]
A0A1E3H0E6_9HYPH1.860e-2756.25Putative membrane protein insertion efficiency fac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1275contigP-wetherbeei_contig1275:5664..5945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1282876.BAOK01000001_gene1646
Preferred nameyidD
PFAMsHaemolytic
Model size282
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K08998
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.46e-30
EggNOG OGsCOG0759@1|root,COG0759@2|Bacteria,1N6U4@1224|Proteobacteria,2UFKH@28211|Alphaproteobacteria,4BQY4@82117|unclassified Alphaproteobacteria
DescriptionCould be involved in insertion of integral membrane proteins into the membrane
Cds size279
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185959.7675061-CDS-P-wetherbeei_contig1275:5663..59421683185959.7675061-CDS-P-wetherbeei_contig1275:5663..5942Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1275 5664..5942 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185959.7803307-UTR-P-wetherbeei_contig1275:5942..59451683185959.7803307-UTR-P-wetherbeei_contig1275:5942..5945Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1275 5943..5945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1275.3.1prot_P-wetherbeei_contig1275.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1275 5664..5942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1275.3.1

>prot_P-wetherbeei_contig1275.3.1 ID=prot_P-wetherbeei_contig1275.3.1|Name=mRNA_P-wetherbeei_contig1275.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
MLKIIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRI
CRCHPWGGQGVDVVPERLEMRYGILQGWRYGRWSRHSNETGK*
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mRNA from alignment at P-wetherbeei_contig1275:5664..5945-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1275.3.1 ID=mRNA_P-wetherbeei_contig1275.3.1|Name=mRNA_P-wetherbeei_contig1275.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig1275:5664..5945- (Phaeothamnion wetherbeei SAG_119_79)
GTCATGCTGAAAATTATCCGCCTCTATCAGCTTGTGCTGTCGCCGCTTCT CGGCCCGTCCTGCCGGTATCAGCCAACCTGTTCGCAATATGCCGCGATTG CTATTCAGCAGCATGGCGCATGGCCGGGTTTCTGGCTGGGGCTTTCGCGT ATTTGCCGCTGTCACCCGTGGGGTGGCCAGGGCGTGGATGTAGTTCCCGA GAGGCTGGAAATGCGCTATGGGATATTGCAGGGCTGGCGTTATGGGCGAT GGTCCCGCCATTCGAATGAAACAGGCAAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1275:5664..5945-

>mRNA_P-wetherbeei_contig1275.3.1 ID=mRNA_P-wetherbeei_contig1275.3.1|Name=mRNA_P-wetherbeei_contig1275.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig1275:5664..5945- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGAAAATTATCCGCCTCTATCAGCTTGTGCTGTCGCCGCTTCTCGG
CCCGTCCTGCCGGTATCAGCCAACCTGTTCGCAATATGCCGCGATTGCTA
TTCAGCAGCATGGCGCATGGCCGGGTTTCTGGCTGGGGCTTTCGCGTATT
TGCCGCTGTCACCCGTGGGGTGGCCAGGGCGTGGATGTAGTTCCCGAGAG
GCTGGAAATGCGCTATGGGATATTGCAGGGCTGGCGTTATGGGCGATGGT
CCCGCCATTCGAATGAAACAGGCAAGTGA
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