mRNA_P-wetherbeei_contig1275.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A3C0TUX7_9PROT (Putative membrane protein insertion efficiency factor n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TUX7_9PROT) HSP 1 Score: 138 bits (348), Expect = 9.670e-41 Identity = 59/83 (71.08%), Postives = 69/83 (83.13%), Query Frame = 1
Query: 4 MLKIIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGRW 252
+L +IR+YQL LSP +G SCR+ PTCS Y A AI++ GAW GFWLGLSR+CRCHPWG QG+D VPE+LEMRYGIL WRYGRW
Sbjct: 17 LLFLIRVYQLTLSPFIGNSCRHIPTCSHYTAGAIRRFGAWRGFWLGLSRVCRCHPWGSQGLDPVPEKLEMRYGILSAWRYGRW 99
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A2A5ET36_9HYPH (Putative membrane protein insertion efficiency factor n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5ET36_9HYPH) HSP 1 Score: 117 bits (292), Expect = 4.160e-32 Identity = 52/84 (61.90%), Postives = 62/84 (73.81%), Query Frame = 1
Query: 4 MLKIIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGRWS 255
+L +++LY+ LSPLLGP CR+ PTCS+YA IA+Q HGAW G WL LSRI RCHPWG +G D VPERLE + WRYG WS
Sbjct: 10 LLGLVQLYRWTLSPLLGPKCRHLPTCSEYALIAVQSHGAWRGGWLALSRITRCHPWGSRGFDPVPERLEAQP-FYAPWRYGHWS 92
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A7S8C0S1_9HYPH (Putative membrane protein insertion efficiency factor n=1 Tax=Kaustia mangrovi TaxID=2593653 RepID=A0A7S8C0S1_9HYPH) HSP 1 Score: 112 bits (279), Expect = 4.580e-30 Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 1
Query: 4 MLKIIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGRWS-RHSNE 270
ML +IRLYQL LS ++G +CR+ P+CS+YAA A+++HGAW GFWLG SR+ RCHPWG G+D VP+ L WRYGRW+ RH E
Sbjct: 23 MLGLIRLYQLTLSAVMGRTCRHMPSCSEYAAEAVRRHGAWRGFWLGFSRVARCHPWGSHGLDPVPDSLPDHGWRF--WRYGRWTGRHITE 110
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A2N3EAR9_9PROT (Putative membrane protein insertion efficiency factor n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11 TaxID=2013657 RepID=A0A2N3EAR9_9PROT) HSP 1 Score: 110 bits (275), Expect = 1.430e-29 Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 1
Query: 13 IIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGRW 252
+IR YQ +SPLLGPSCR+ PTCS Y A+++HG W GFWLGL+RI RCHP+G G D VPERL+ + + WRYGRW
Sbjct: 13 LIRFYQWFISPLLGPSCRHLPTCSDYTMQAMERHGGWRGFWLGLARIARCHPYGSHGFDPVPERLDDQP-LWAPWRYGRW 91
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A2S9Q5A3_9HYPH (Putative membrane protein insertion efficiency factor n=3 Tax=Labrys TaxID=204476 RepID=A0A2S9Q5A3_9HYPH) HSP 1 Score: 107 bits (268), Expect = 1.400e-28 Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 1
Query: 13 IIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGR 249
+IR YQ+ LS L+G CRY P+CS+YA AI++HG W G W+GL+RICRCHPWGG G+D VPERL + WRY R
Sbjct: 11 VIRTYQVTLSALIGRQCRYFPSCSEYADEAIERHGLWAGGWMGLARICRCHPWGGSGLDPVPERLPADTSWYRPWRYRR 89
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A2N3E9R4_9PROT (Putative membrane protein insertion efficiency factor n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3E9R4_9PROT) HSP 1 Score: 107 bits (268), Expect = 1.620e-28 Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query: 13 IIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGRW 252
+I+ YQ +SPLLGPSCR+ PTCS Y A A+++HG W G WLGLSR+ RCHPWG G D VP++L + WRYGRW
Sbjct: 13 LIKAYQWFISPLLGPSCRHLPTCSDYVAQAVERHGPWRGGWLGLSRVLRCHPWGSHGFDPVPDKLAPQP-FWAPWRYGRW 91
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A5C1WFF2_9HYPH (Putative membrane protein insertion efficiency factor n=1 Tax=Labrys sp. KNU-23 TaxID=2789216 RepID=A0A5C1WFF2_9HYPH) HSP 1 Score: 106 bits (265), Expect = 4.000e-28 Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 1
Query: 13 IIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGR 249
+IR YQ+ LS L+G CRY P+CS+YA AI++HG W G W+G+ RICRCHPWG G+D VPERL + WRYGR
Sbjct: 11 VIRTYQVTLSALIGRQCRYFPSCSEYADEAIERHGVWAGGWMGVFRICRCHPWGSSGLDPVPERLPADTSWYRPWRYGR 89
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A2N5XW30_9HYPH (Putative membrane protein insertion efficiency factor n=1 Tax=Cohaesibacter celericrescens TaxID=2067669 RepID=A0A2N5XW30_9HYPH) HSP 1 Score: 106 bits (264), Expect = 6.190e-28 Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1
Query: 13 IIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGRW 252
+I+LYQ+ LSP +G CRYQPTCS Y +I+++G W G W+G++RICRCHPWG G D VPERL + WRYG W
Sbjct: 8 LIKLYQIFLSPFMGRQCRYQPTCSHYTEGSIRRYGFWIGSWIGIARICRCHPWGYSGFDPVPERLPQDACWYKPWRYGLW 87
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A212Q9H7_RHOAC (Putative membrane protein insertion efficiency factor n=1 Tax=Rhodoblastus acidophilus TaxID=1074 RepID=A0A212Q9H7_RHOAC) HSP 1 Score: 105 bits (263), Expect = 1.020e-27 Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 1
Query: 13 IIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGRWSR 258
+IR YQL LS L+G CRY PTCS Y A+ +HG W G W+GLSR+CRCHPWG G D VP+ + L+ WRYG W R
Sbjct: 15 LIRFYQLTLSGLIGRQCRYLPTCSAYMDEALDRHGLWAGGWMGLSRLCRCHPWGDSGFDPVPKTVSPGADPLRPWRYGHWRR 96
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Match: A0A1E3H0E6_9HYPH (Putative membrane protein insertion efficiency factor n=2 Tax=Methylobrevis pamukkalensis TaxID=1439726 RepID=A0A1E3H0E6_9HYPH) HSP 1 Score: 105 bits (262), Expect = 1.860e-27 Identity = 45/80 (56.25%), Postives = 52/80 (65.00%), Query Frame = 1
Query: 16 IRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRICRCHPWGGQGVDVVPERLEMRYGILQGWRYGRWS 255
IR YQL +S +G CRY PTCS+Y AI++HG WPG W+GL+RI RCHPW G D PERL RY WR G WS
Sbjct: 32 IRTYQLTISGFIGRQCRYLPTCSEYTDDAIRRHGVWPGIWIGLARILRCHPWSPSGFDPAPERLSPRYRWYAPWRAGIWS 111 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1275.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1275.3.1 >prot_P-wetherbeei_contig1275.3.1 ID=prot_P-wetherbeei_contig1275.3.1|Name=mRNA_P-wetherbeei_contig1275.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp MLKIIRLYQLVLSPLLGPSCRYQPTCSQYAAIAIQQHGAWPGFWLGLSRIback to top mRNA from alignment at P-wetherbeei_contig1275:5664..5945- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1275.3.1 ID=mRNA_P-wetherbeei_contig1275.3.1|Name=mRNA_P-wetherbeei_contig1275.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig1275:5664..5945- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1275:5664..5945- >mRNA_P-wetherbeei_contig1275.3.1 ID=mRNA_P-wetherbeei_contig1275.3.1|Name=mRNA_P-wetherbeei_contig1275.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig1275:5664..5945- (Phaeothamnion wetherbeei SAG_119_79)back to top |