mRNA_P-wetherbeei_contig6525.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6525.2.1
Unique NamemRNA_P-wetherbeei_contig6525.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6525.2.1 vs. uniprot
Match: A0A835YPT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPT0_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.120e-20
Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   19 YGVTFNAGRTAYYFNLEYLTVDVDHNYEIWWVQRTMYNYIVRKRKAFTVSSPDCNFDEVNNQYFPYA 219
            Y VTFN GRT Y F  +++ +++D+NYE+WWVQRT    +V+KRK FTV++P C FD VNNQYFPYA
Sbjct:  387 YRVTFNGGRTDYAFEPQHVALELDYNYELWWVQRTRSALVVQKRKPFTVTAPRCTFDAVNNQYFPYA 453          
BLAST of mRNA_P-wetherbeei_contig6525.2.1 vs. uniprot
Match: A0A7S4A5W8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A5W8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.570e-18
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 DGDETQYGVTFNAGRTAYYFNLEYLTVDVD-----HNYEIWWVQRTMYNYIVRKRKAFTVSSPDCNFDEVNNQYFPYAI 222
            D DE    VTFN GRT Y F     T DV+     HNY+IWWVQRT YN++V+++KAF V+ P C FD VN++YFPY +
Sbjct:  665 DNDEDYILVTFNGGRTHYPFR----TSDVELHQPRHNYQIWWVQRTRYNFVVQQKKAFRVTEPTCTFDSVNDRYFPYTM 739          
BLAST of mRNA_P-wetherbeei_contig6525.2.1 vs. uniprot
Match: A0A7S2FKQ0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKQ0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.920e-18
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   16 QYGVTFNAGRTAYYFNLEYLTVDV-DHNYEIWWVQRTMYNYIVRKRKAFTVSSPDCNFDEVNNQYFPYAI 222
            QY V+FN GRT Y F    L ++  D NYE+WWV+RT YNYIVRK+K F V +P+C FD VN+QY P+A+
Sbjct:  583 QYKVSFNDGRTEYDFAEADLVLEKEDFNYEVWWVERTRYNYIVRKKKPFRVVAPECTFDRVNDQYLPFAL 652          
BLAST of mRNA_P-wetherbeei_contig6525.2.1 vs. uniprot
Match: F0YQ04_AURAN (SRCR domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQ04_AURAN)

HSP 1 Score: 84.0 bits (206), Expect = 3.460e-17
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    1 DGDETQYGVTFNAGRTAYYFNLEYLTVDVD-HNYEIWWVQRTMYNYIVRKRKAFTVSSPDCNFDEVNNQYFPYAI 222
            D D   Y VTFN  RT Y F    L +    HNY++WWVQRT YN+IV+K+KA  V+ P C FD +N++YFPY I
Sbjct:  340 DEDSIYYLVTFNDNRTNYAFRSTDLELHQPRHNYQLWWVQRTRYNFIVQKKKAIRVTEPTCTFDSINDRYFPYTI 414          
BLAST of mRNA_P-wetherbeei_contig6525.2.1 vs. uniprot
Match: F0Y987_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y987_AURAN)

HSP 1 Score: 84.0 bits (206), Expect = 3.610e-17
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    1 DGDETQYGVTFNAGRTAYYFNLEYLTVDVD-HNYEIWWVQRTMYNYIVRKRKAFTVSSPDCNFDEVNNQYFPYAI 222
            D D   Y VTFN  RT Y F    L +    HNY++WWVQRT YN+IV+K+KA  V+ P C FD +N++YFPY I
Sbjct:  243 DEDSIYYLVTFNDNRTNYAFRSTDLELHQPRHNYQLWWVQRTRYNFIVQKKKAIRVTEPTCTFDSINDRYFPYTI 317          
BLAST of mRNA_P-wetherbeei_contig6525.2.1 vs. uniprot
Match: A0A7S2JR29_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JR29_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.890e-13
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   16 QYGVTFNAGRTAYYFNLEYLT-VDVDHNYEIWWVQRTMYNYIVRKRKAFTVSSPDCNFDEVNNQYFPYAI 222
            +YG++FN GRT Y+F+ ++   V   +NYE+W+VQRT    I+  +K F V+ P C FD ++++YFPYAI
Sbjct:  135 KYGISFNNGRTKYFFDEDHFDLVHPRNNYELWFVQRTRREKIILMKKPFQVTWPPCTFDALSDEYFPYAI 204          
BLAST of mRNA_P-wetherbeei_contig6525.2.1 vs. uniprot
Match: A0A7S2DUE1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DUE1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.370e-12
Identity = 30/69 (43.48%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   19 YGVTFNAGRTAY-YFNLEYLTVDVDHNYEIWWVQRTMYNYIVRKRKAFTVSSPDCNFDEVNNQYFPYAI 222
            Y V+FN GRT Y +++ E         Y++WWVQRT + +IVR++K F V +P C +D  N++Y+PYA+
Sbjct:  136 YLVSFNDGRTQYEFYDFEIDLRKPPSYYQVWWVQRTRFEFIVRRKKNFKVVAPMCTYDTTNDRYYPYAV 204          
BLAST of mRNA_P-wetherbeei_contig6525.2.1 vs. uniprot
Match: H3GRN3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GRN3_PHYRM)

HSP 1 Score: 60.8 bits (146), Expect = 4.260e-9
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1
Query:   94 NYEIWWVQRTMYNYIVRKRKAFTVSSPDCNFDEVNNQYFPY 216
            +YEIWWVQRT YN+IV+K+K F V+SP C+FD   N+Y  Y
Sbjct:  296 DYEIWWVQRTRYNFIVQKKKKFRVTSPQCDFDFATNKYKNY 336          
BLAST of mRNA_P-wetherbeei_contig6525.2.1 vs. uniprot
Match: W2PYN6_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2PYN6_PHYPN)

HSP 1 Score: 60.8 bits (146), Expect = 4.300e-9
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1
Query:   94 NYEIWWVQRTMYNYIVRKRKAFTVSSPDCNFDEVNNQYFPY 216
            +YEIWWVQRT YN+IV+K+K F V+SP C+FD   N+Y  Y
Sbjct:  300 DYEIWWVQRTRYNFIVQKKKKFRVTSPQCDFDFATNKYKNY 340          
BLAST of mRNA_P-wetherbeei_contig6525.2.1 vs. uniprot
Match: A0A6A3U1K2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3U1K2_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.750e-9
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1
Query:   94 NYEIWWVQRTMYNYIVRKRKAFTVSSPDCNFDEVNNQYFPY 216
            +YEIWWVQRT YN+IV+K+K F ++SP C+FD   N+Y  Y
Sbjct:  237 DYEIWWVQRTRYNFIVQKKKKFRITSPQCDFDFATNKYKNY 277          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6525.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A835YPT0_9STRA1.120e-2059.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4A5W8_9STRA1.570e-1853.16Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2FKQ0_9STRA2.920e-1857.14Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0YQ04_AURAN3.460e-1752.00SRCR domain-containing protein (Fragment) n=1 Tax=... [more]
F0Y987_AURAN3.610e-1752.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2JR29_9STRA1.890e-1345.71Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2DUE1_9STRA2.370e-1243.48Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
H3GRN3_PHYRM4.260e-960.98Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
W2PYN6_PHYPN4.300e-960.98Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
A0A6A3U1K2_9STRA4.750e-958.54Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6525contigP-wetherbeei_contig6525:2060..2718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LT32
Model size228
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.34e-25
EggNOG OGs2CM7C@1|root,2QPIH@2759|Eukaryota
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186919.9511883-CDS-P-wetherbeei_contig6525:2059..21611683186919.9511883-CDS-P-wetherbeei_contig6525:2059..2161Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6525 2060..2161 +
1683186919.9599848-CDS-P-wetherbeei_contig6525:2592..27181683186919.9599848-CDS-P-wetherbeei_contig6525:2592..2718Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6525 2593..2718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6525.2.1prot_P-wetherbeei_contig6525.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6525 2060..2718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6525.2.1

>prot_P-wetherbeei_contig6525.2.1 ID=prot_P-wetherbeei_contig6525.2.1|Name=mRNA_P-wetherbeei_contig6525.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp
DGDETQYGVTFNAGRTAYYFNLEYLTVDVDHNYEIWWVQRTMYNYIVRKR
KAFTVSSPDCNFDEVNNQYFPYAIT*
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mRNA from alignment at P-wetherbeei_contig6525:2060..2718+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6525.2.1 ID=mRNA_P-wetherbeei_contig6525.2.1|Name=mRNA_P-wetherbeei_contig6525.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=659bp|location=Sequence derived from alignment at P-wetherbeei_contig6525:2060..2718+ (Phaeothamnion wetherbeei SAG_119_79)
GATGGCGACGAGACGCAGTATGGCGTCACCTTCAACGCCGGCCGCACCGC CTACTACTTCAACCTGGAGTACCTAACCGTCGACGTGGACCACAACTACG AGGTACGTGATGGCGTCATGTGTTGGTTGAGATGAATGCGACGAACGCTT CGGGCCGGCCGCTCTTACTGCCGTGCCGCCTGCCGCAATACGGGCCAACC GAGGGCGGCGGCTCCTGCGGCGAATGCGTCTGCTTTCGCCGGCAGCTGCC GTTGGCAGCCGCTGCCGCGTGCCGCCTTTGCTTCCTCGTTGGTGTACGGC TGGCACAGTCGGAGTTCGATTTTCTGTTACGCTCACCAGAGAAGCTGGTT GGGTTAGTTTTCGTGCGGCGTAGTGCGCTCTCCTGTTTCAGGCGATGAGT TCAGCAACTACCGACGTCACTGCCGTTTATTTTCACGGGCGCCTGACACT ATTGCCGTCATCGCTGCTGCCGCCTCCGCCGCCACTGCCACCGCTGCCGC CGCCGCCGCCGTTGCCGCTGCTGCCGCTACTAGATATGGTGGGTGCAAAG GACAATGTACAACTACATCGTCCGGAAGCGCAAGGCCTTCACAGTGTCGA GCCCCGATTGCAACTTCGATGAGGTTAACAATCAGTATTTCCCATATGCA ATAACATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6525:2060..2718+

>mRNA_P-wetherbeei_contig6525.2.1 ID=mRNA_P-wetherbeei_contig6525.2.1|Name=mRNA_P-wetherbeei_contig6525.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig6525:2060..2718+ (Phaeothamnion wetherbeei SAG_119_79)
GATGGCGACGAGACGCAGTATGGCGTCACCTTCAACGCCGGCCGCACCGC
CTACTACTTCAACCTGGAGTACCTAACCGTCGACGTGGACCACAACTACG
AGATATGGTGGGTGCAAAGGACAATGTACAACTACATCGTCCGGAAGCGC
AAGGCCTTCACAGTGTCGAGCCCCGATTGCAACTTCGATGAGGTTAACAA
TCAGTATTTCCCATATGCAATAACATAG
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