mRNA_P-wetherbeei_contig6522.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6522.1.1
Unique NamemRNA_P-wetherbeei_contig6522.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6522.1.1 vs. uniprot
Match: A0A7S2FVB6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FVB6_9STRA)

HSP 1 Score: 174 bits (441), Expect = 6.320e-52
Identity = 95/131 (72.52%), Postives = 103/131 (78.63%), Query Frame = 1
Query:    4 MNRIFGTKKEKVPPPSLSDAGGRIDERVKAIDAKIAALDQELIKYKNALKNAKGGAAQNIKRRAMEALXXKKMYENQRDQMAGQQFNVEQTSFAIDSIKDTQTTVAAMKAANKQLKMETKKINISEVRQRQ 396
            MNRIFG KK+  PPPSL+DA GRID RV+A+D KIA LD EL KYK  LK AKG  A NIKRRAME L  KKMYE QRDQMAGQ FN+EQTSFAIDSIKDTQTTVAAMK A K LK ETKK+NI ++   Q
Sbjct:   27 MNRIFGKKKDVAPPPSLTDASGRIDSRVQAMDEKIAKLDLELRKYKEQLKKAKGPTAANIKRRAMETLKRKKMYEQQRDQMAGQAFNIEQTSFAIDSIKDTQTTVAAMKDAAKTLKAETKKLNIDQIEDTQ 157          
BLAST of mRNA_P-wetherbeei_contig6522.1.1 vs. uniprot
Match: A0A835ZMU4_9STRA (Snf7 family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMU4_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.370e-50
Identity = 90/127 (70.87%), Postives = 104/127 (81.89%), Query Frame = 1
Query:    4 MNRIFGTKKEKVPPPSLSDAGGRIDERVKAIDAKIAALDQELIKYKNALKNAKGGAAQNIKRRAMEALXXKKMYENQRDQMAGQQFNVEQTSFAIDSIKDTQTTVAAMKAANKQLKMETKKINISEV 384
            MNRIFG KK+  P PSLSDAG R+DER + +D KI  LDQEL+++K+AL  AKG AA NIKRRAME L  KKMYE QRDQ+AGQQFN+EQT+F IDSIKDTQTTV AMK ANKQ+K E KK+NISE+
Sbjct:    1 MNRIFGKKKDTGPAPSLSDAGARVDERTRNLDEKIKVLDQELLRHKHALAKAKGQAAVNIKRRAMETLKRKKMYEAQRDQLAGQQFNIEQTNFTIDSIKDTQTTVQAMKGANKQIKSEFKKMNISEI 127          
BLAST of mRNA_P-wetherbeei_contig6522.1.1 vs. uniprot
Match: D8LTZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ1_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 2.710e-47
Identity = 89/127 (70.08%), Postives = 101/127 (79.53%), Query Frame = 1
Query:    4 MNRIFGTKKEKVPPPSLSDAGGRIDERVKAIDAKIAALDQELIKYKNALKNAKGGAAQNIKRRAMEALXXKKMYENQRDQMAGQQFNVEQTSFAIDSIKDTQTTVAAMKAANKQLKMETKKINISEV 384
            M R+FG KKEK P PSLS+AGGR+DERV  I      LDQEL+KY+NALK AKG  A NIK+RAME L  KKMYE QRDQMAGQQFN+EQT FAIDSIKDT TTVAAMK A+K LK + KKI+I++V
Sbjct:   75 MKRVFGKKKEKGPAPSLSEAGGRVDERVAKIXXXXXGLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTVAAMKDASKTLKADIKKIDINKV 201          
BLAST of mRNA_P-wetherbeei_contig6522.1.1 vs. uniprot
Match: A0A7S4EE62_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EE62_9STRA)

HSP 1 Score: 147 bits (372), Expect = 5.830e-42
Identity = 79/131 (60.31%), Postives = 94/131 (71.76%), Query Frame = 1
Query:    4 MNRIFGTKKEKVPPPSLSDAGGRIDERVKAIDAKIAALDQELIKYKNALKNAKGGAAQNIKRRAMEALXXKKMYENQRDQMAGQQFNVEQTSFAIDSIKDTQTTVAAMKAANKQLKMETKKINISEVRQRQ 396
            M RIFG +K K P PSL DA  R+DER  A+D KI  LD EL  YK  LK A+G A Q +KRRAM  L  K+MYE QRDQ+AGQ FNVEQT+FAIDS+KDT TTV AMK A+K LK E KK+++S++   Q
Sbjct:    1 MRRIFGARKAKAPAPSLGDASQRLDERTTALDEKIRKLDIELAGYKEKLKKARGAAQQTLKRRAMGVLRRKRMYEQQRDQLAGQAFNVEQTNFAIDSVKDTLTTVQAMKTASKTLKKEVKKVDLSQIEDLQ 131          
BLAST of mRNA_P-wetherbeei_contig6522.1.1 vs. uniprot
Match: A0A7S2ALR0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ALR0_9STRA)

HSP 1 Score: 143 bits (360), Expect = 4.590e-41
Identity = 81/131 (61.83%), Postives = 87/131 (66.41%), Query Frame = 1
Query:    4 MNRIFGTKKEKVPPPSLSDAGGRIDERVKAIDAKIAALDQELIKYKNALKNAKGGAAQNIKRRAMEALXXKKMYENQRDQMAGQQFNVEQTSFAIDSIKDTQTTVAAMKAANKQLKMETKKINISEVRQRQ 396
            MNRIFG KK   P PSLSDA GRID+RV A+D                   AKG  A NIKRRAM+ L  KKMYE QRDQMAGQ FN+EQTSFAIDSIKDTQTTVAAMK A   LK ETKK+NI  +   Q
Sbjct:    1 MNRIFGKKKPTAPAPSLSDASGRIDQRVSAVDXXXXXXXXXXXXXXXXXXXAKGPTAANIKRRAMDTLKRKKMYEQQRDQMAGQAFNIEQTSFAIDSIKDTQTTVAAMKVAASTLKAETKKLNIDSIEDTQ 131          
BLAST of mRNA_P-wetherbeei_contig6522.1.1 vs. uniprot
Match: A0A7S3K2P3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2P3_9STRA)

HSP 1 Score: 145 bits (366), Expect = 6.730e-41
Identity = 77/132 (58.33%), Postives = 96/132 (72.73%), Query Frame = 1
Query:    1 RMNRIFGTKKEKVPPPSLSDAGGRIDERVKAIDAKIAALDQELIKYKNALKNAKGGAAQNIKRRAMEALXXKKMYENQRDQMAGQQFNVEQTSFAIDSIKDTQTTVAAMKAANKQLKMETKKINISEVRQRQ 396
            +M RIFG KK+  PPP+L DAG ++D RV A+D KI  L+ EL  YK  LK A+G A + +K+RAM  L  KKMYE QRDQ+AGQ FN+EQT+F IDS+KDT TTV AMKAA+K LK E KK+NI ++   Q
Sbjct:    9 KMKRIFGQKKDVAPPPTLGDAGAKVDSRVAALDEKIKKLEVELSGYKEKLKRARGPAQKTLKQRAMGVLKRKKMYEQQRDQLAGQAFNIEQTNFTIDSVKDTITTVDAMKAASKTLKTEFKKVNIDKIDDLQ 140          
BLAST of mRNA_P-wetherbeei_contig6522.1.1 vs. uniprot
Match: A0A7S2AMY1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AMY1_9STRA)

HSP 1 Score: 140 bits (353), Expect = 5.650e-39
Identity = 80/131 (61.07%), Postives = 86/131 (65.65%), Query Frame = 1
Query:    4 MNRIFGTKKEKVPPPSLSDAGGRIDERVKAIDAKIAALDQELIKYKNALKNAKGGAAQNIKRRAMEALXXKKMYENQRDQMAGQQFNVEQTSFAIDSIKDTQTTVAAMKAANKQLKMETKKINISEVRQRQ 396
            MNRIFG KK   P PSLSDA GRID+RV A+                    AKG  A NIKRRAM+ L  KKMYE QRDQMAGQ FN+EQTSFAIDSIKDTQTTVAAMK A   LK ETKK+NI  +   Q
Sbjct:    1 MNRIFGKKKPTAPAPSLSDASGRIDQRVSAVXXXXXXXXXXXXXXXXXXXXAKGPTAANIKRRAMDTLKRKKMYEQQRDQMAGQAFNIEQTSFAIDSIKDTQTTVAAMKVAASTLKAETKKLNIDSIEDTQ 131          
BLAST of mRNA_P-wetherbeei_contig6522.1.1 vs. uniprot
Match: A0A485L0R2_9STRA (Aste57867_14479 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0R2_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.120e-37
Identity = 71/131 (54.20%), Postives = 93/131 (70.99%), Query Frame = 1
Query:    4 MNRIFGTKKEKVPPPSLSDAGGRIDERVKAIDAKIAALDQELIKYKNALKNAKGGAAQNIKRRAMEALXXKKMYENQRDQMAGQQFNVEQTSFAIDSIKDTQTTVAAMKAANKQLKMETKKINISEVRQRQ 396
            MNRIFG KK + PP  + D  GR+D RV+ +D KIA L++EL+KY+  +  AKG A  +IK+RA++ L  KKMYE QRD MA Q FN+EQ SFAI++ KD+  TV+AMK+A  QLK ETKK N +E+   Q
Sbjct:    1 MNRIFGKKKPEAPPVDIGDVRGRVDGRVETLDMKIAKLEEELLKYRQQMAKAKGAALTSIKQRALQTLKRKKMYEQQRDAMASQSFNIEQASFAIETAKDSLDTVSAMKSAATQLKAETKKFNFAELENVQ 131          
BLAST of mRNA_P-wetherbeei_contig6522.1.1 vs. uniprot
Match: A0A0N5AP19_9BILA (Uncharacterized protein n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5AP19_9BILA)

HSP 1 Score: 131 bits (329), Expect = 2.630e-35
Identity = 72/132 (54.55%), Postives = 95/132 (71.97%), Query Frame = 1
Query:    4 MNRIFGTKKEKVPPPSLSDAGGRIDERVKAIDAKIAALDQELIKYKNALKNAKGGAAQN-IKRRAMEALXXKKMYENQRDQMAGQQFNVEQTSFAIDSIKDTQTTVAAMKAANKQLKMETKKINISEVRQRQ 396
            M RIFGT  +K PPPSLSDA   ID R ++I+ KIA LD EL+KYK+ +K  + G  +N +K++A+  L  K+MYENQRDQ+A Q FN+EQ++FAI  +KDTQTTV AMK+  K +K E KKI+I E+   Q
Sbjct:    1 MRRIFGTSGKKEPPPSLSDAIANIDSRGESIEKKIAKLDAELVKYKDEMKKMREGPGKNQVKQKALRILKQKRMYENQRDQLAQQSFNMEQSNFAIQGMKDTQTTVNAMKSGLKAMKKEYKKIDIDEIENLQ 132          
BLAST of mRNA_P-wetherbeei_contig6522.1.1 vs. uniprot
Match: E4WZN8_OIKDI (Uncharacterized protein n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4WZN8_OIKDI)

HSP 1 Score: 128 bits (322), Expect = 1.850e-34
Identity = 68/132 (51.52%), Postives = 91/132 (68.94%), Query Frame = 1
Query:    4 MNRIFGTKKEKVPPPSLSDAGGRIDERVKAIDAKIAALDQELIKYKNALKNAKGGAAQN-IKRRAMEALXXKKMYENQRDQMAGQQFNVEQTSFAIDSIKDTQTTVAAMKAANKQLKMETKKINISEVRQRQ 396
            MNRIFG+ K K PPP+L+D    +D R  +ID KIA LD EL+KYKN +K  + G  +N +K++AM  L  +KMYE QR+Q++ Q FN++Q +F I S+KDTQ TV AMKA  K +K E KKINI ++   Q
Sbjct:    1 MNRIFGSGKPKAPPPNLNDCVQNLDSRGDSIDKKIAKLDAELVKYKNQMKTMRNGPGKNAVKQKAMRVLKQRKMYEGQREQISNQSFNMDQANFTIQSLKDTQDTVTAMKAGAKAMKKEYKKINIDKIEDLQ 132          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6522.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2FVB6_9STRA6.320e-5272.52Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835ZMU4_9STRA1.370e-5070.87Snf7 family n=1 Tax=Tribonema minus TaxID=303371 R... [more]
D8LTZ1_ECTSI2.710e-4770.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4EE62_9STRA5.830e-4260.31Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2ALR0_9STRA4.590e-4161.83Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3K2P3_9STRA6.730e-4158.33Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2AMY1_9STRA5.650e-3961.07Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A485L0R2_9STRA2.120e-3754.20Aste57867_14479 protein n=1 Tax=Aphanomyces stella... [more]
A0A0N5AP19_9BILA2.630e-3554.55Uncharacterized protein n=1 Tax=Syphacia muris Tax... [more]
E4WZN8_OIKDI1.850e-3451.52Uncharacterized protein n=1 Tax=Oikopleura dioica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6522contigP-wetherbeei_contig6522:2879..3316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTZ1
Preferred nameCHMP5
PFAMsSnf7
Model size438
Max annot lvl2759|Eukaryota
KEGG rclassRC00918,RC01781
KEGG koko:K01698,ko:K12198
KEGG ReactionR00036
KEGG Pathwayko00860,ko01100,ko01110,ko01120,ko04144,ko04217,map00860,map01100,map01110,map01120,map04144,map04217
KEGG ModuleM00121,M00412
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000815,GO:0000819,GO:0000920,GO:0001919,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005773,GO:0005774,GO:0005829,GO:0006810,GO:0006886,GO:0006996,GO:0006997,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007346,GO:0008104,GO:0008150,GO:0008333,GO:0009987,GO:0010008,GO:0010256,GO:0010564,GO:0010824,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0019058,GO:0019068,GO:0019222,GO:0022402,GO:0022411,GO:0022607,GO:0023051,GO:0030447,GO:0031090,GO:0031323,GO:0031410,GO:0031982,GO:0032509,GO:0032510,GO:0032511,GO:0032886,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0036257,GO:0036258,GO:0036452,GO:0040007,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044087,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046605,GO:0046755,GO:0046907,GO:0048284,GO:0048285,GO:0050000,GO:0050789,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051276,GO:0051301,GO:0051303,GO:0051310,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0060236,GO:0060255,GO:0061024,GO:0061025,GO:0061763,GO:0065007,GO:0070507,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071985,GO:0080171,GO:0090169,GO:0090174,GO:0090224,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0098852,GO:0140014,GO:1901673,GO:1902115,GO:1903047,GO:1904896,GO:1904903
Exons1
Evalue4.27e-48
EggNOG OGsKOG1655@1|root,KOG1655@2759|Eukaryota
Ec32 ortholog descriptionSnf7 family protein
Ec32 orthologEc-12_003810.1
EC4.2.1.24
Descriptionvacuolar transport
Cds size435
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186919.8329234-UTR-P-wetherbeei_contig6522:2878..28811683186919.8329234-UTR-P-wetherbeei_contig6522:2878..2881Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6522 2879..2881 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186919.8433416-CDS-P-wetherbeei_contig6522:2881..33161683186919.8433416-CDS-P-wetherbeei_contig6522:2881..3316Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6522 2882..3316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6522.1.1prot_P-wetherbeei_contig6522.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6522 2882..3316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6522.1.1

>prot_P-wetherbeei_contig6522.1.1 ID=prot_P-wetherbeei_contig6522.1.1|Name=mRNA_P-wetherbeei_contig6522.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
MNRIFGTKKEKVPPPSLSDAGGRIDERVKAIDAKIAALDQELIKYKNALK
NAKGGAAQNIKRRAMEALKRKKMYENQRDQMAGQQFNVEQTSFAIDSIKD
TQTTVAAMKAANKQLKMETKKINISEVRQRQLTKIVEFIFLVVP*
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mRNA from alignment at P-wetherbeei_contig6522:2879..3316+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6522.1.1 ID=mRNA_P-wetherbeei_contig6522.1.1|Name=mRNA_P-wetherbeei_contig6522.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig6522:2879..3316+ (Phaeothamnion wetherbeei SAG_119_79)
AGGATGAATCGAATTTTCGGGACCAAGAAGGAGAAGGTTCCGCCGCCTAG CCTCAGCGACGCAGGAGGGAGAATAGACGAGCGAGTGAAGGCCATTGACG CGAAGATTGCTGCACTTGATCAGGAGCTCATCAAGTACAAGAACGCGCTG AAGAATGCAAAGGGCGGAGCTGCCCAGAACATCAAGAGAAGAGCCATGGA GGCGCTGAAGAGGAAAAAGATGTACGAAAATCAGCGGGACCAAATGGCAG GCCAGCAATTCAACGTGGAGCAGACGTCGTTCGCCATCGATTCCATCAAG GACACGCAGACCACGGTGGCCGCAATGAAGGCCGCCAACAAGCAACTCAA GATGGAGACGAAGAAGATTAACATTAGCGAGGTAAGACAACGACAATTGA CGAAGATTGTGGAATTTATTTTCCTGGTCGTACCCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6522:2879..3316+

>mRNA_P-wetherbeei_contig6522.1.1 ID=mRNA_P-wetherbeei_contig6522.1.1|Name=mRNA_P-wetherbeei_contig6522.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig6522:2879..3316+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAATCGAATTTTCGGGACCAAGAAGGAGAAGGTTCCGCCGCCTAGCCT
CAGCGACGCAGGAGGGAGAATAGACGAGCGAGTGAAGGCCATTGACGCGA
AGATTGCTGCACTTGATCAGGAGCTCATCAAGTACAAGAACGCGCTGAAG
AATGCAAAGGGCGGAGCTGCCCAGAACATCAAGAGAAGAGCCATGGAGGC
GCTGAAGAGGAAAAAGATGTACGAAAATCAGCGGGACCAAATGGCAGGCC
AGCAATTCAACGTGGAGCAGACGTCGTTCGCCATCGATTCCATCAAGGAC
ACGCAGACCACGGTGGCCGCAATGAAGGCCGCCAACAAGCAACTCAAGAT
GGAGACGAAGAAGATTAACATTAGCGAGGTAAGACAACGACAATTGACGA
AGATTGTGGAATTTATTTTCCTGGTCGTACCCTAA
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