mRNA_P-wetherbeei_contig6502.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6502.1.1
Unique NamemRNA_P-wetherbeei_contig6502.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6502.1.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 163 bits (413), Expect = 4.720e-43
Identity = 105/274 (38.32%), Postives = 146/274 (53.28%), Query Frame = 1
Query:   13 AAAAVDGPVPQSVAEALEGSEVTEWMAAMQEELSANDRNKTWRRSSHVPHGRNVIGCRLVFAKKRAADGAILLYKARIVAQGFSQRPGVHYGAMFAPVMSADAMRFIFALAAEFDFEVHQMDVATAYLSAPRTDLLWMRVPPG-PFGFVDCAALQLLKAIYGLKQAANLWHFCLRSRLLSDGFRAVDADCCVSVHGDVSPVVAAGGKGTYLVVGIHVDDLLAAGAPTSAITGFKASISQRFAMKDFGRVHTMFGILVQQNKAG-TIRLPQPHYL 828
            AA   DG  P++V EA    E  +W AA+++EL    +  TW  +   P G NV+G   VF  KR A GAI  YKAR+VAQGFSQ PGV Y   FAPV    ++R + ALAA FD+E+HQMDV  AYL+    + ++M+ PPG P    +     L K IYGLKQA   W+  L +  L  GF     D  V            G  G   +V + VDDL  A      ++  K+++  +F M D G +H + G+ +++++ G TI + Q  Y+
Sbjct:   21 AAGGGDGVEPRTVDEAKASGEWPQWEAAIEDELGRMKKMGTWELAEKPP-GANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVCHLFKPIYGLKQAGRRWYKKLCAAFLDMGFARSSVDHSVFFR--------HGPNGEIAIVAVSVDDLAIAANSVDEMSHIKSALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYI 285          
BLAST of mRNA_P-wetherbeei_contig6502.1.1 vs. uniprot
Match: A0A075B3L7_ROZAC (Integrase, catalytic core domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B3L7_ROZAC)

HSP 1 Score: 164 bits (416), Expect = 2.340e-42
Identity = 92/268 (34.33%), Postives = 143/268 (53.36%), Query Frame = 1
Query:   37 VPQSVAEALEGSEVTEWMAAMQEELSANDRNKTWRRSSHVPHGRNVIGCRLVFAKKRAADGAILLYKARIVAQGFSQRPGVHYGAMFAPVMSADAMRFIFALAAEFDFEVHQMDVATAYLSAPRTDLLWMRVPPGPFGFV----DCAALQLLKAIYGLKQAANLWHFCLRSRLLSDGFRAVDADCCVSVHGDVSPVVAAGGKGTYLVVGIHVDDLLAAGAPTSAITGFKASISQRFAMKDFGRVHTMFGILVQQNKAGTIRLPQPHYL 828
            +P++V EAL G+E  EW  AM+ E  + + NKTW+    +P  R  +GCR VFAKK  ++G +  YKAR+VAQGFSQRPG+     +APV    ++R + AL  + D+ +HQMD+ TAYL+     +++M+ P G   F+    +     L K++YGLKQ+  LW+  +   L  +GF+   AD C+ V  +          G  +V+ I+VDD++        I   K  +   + +KD G +    GI + +       L Q  Y+
Sbjct:  372 IPRNVKEALSGAEANEWKQAMETEYKSLEENKTWK-LCELPASRTAVGCRWVFAKKFDSEGKLQRYKARLVAQGFSQRPGIDVEQTYAPVTRIQSVRILIALGVQLDWHMHQMDMVTAYLNGTLDTMIYMKQPEG---FIKEGSENLVCDLQKSLYGLKQSGRLWNIKIDCDLRKNGFKRCRADWCIYVKQE---------NGVIIVIAIYVDDIIIMSKEIELINKTKDLLKTLYKVKDMGNIGWCLGIKINRIGENVTELSQKQYI 626          
BLAST of mRNA_P-wetherbeei_contig6502.1.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 160 bits (406), Expect = 1.610e-41
Identity = 97/263 (36.88%), Postives = 146/263 (55.51%), Query Frame = 1
Query:   40 PQSVAEALEGSEVTEWMAAMQEELSANDRNKTWRRSSHVPHGRNVIGCRLVFAKKRAADGAILLYKARIVAQGFSQRPGVHYGAMFAPVMSADAMRFIFALAAEFDFEVHQMDVATAYLSAPRTDLLWMRVPPG-PFGFVDCAALQLLKAIYGLKQAANLWHFCLRSRLLSDGFRAVDADCCVSVHGDVSPVVAAGGKGTYLVVGIHVDDLLAAGAPTSAITGFKASISQRFAMKDFGRVHTMFGILVQQNKAGTIRLPQPHY 825
            P +V+EAL G     W  AMQ+E+ +   +  W   + +P  R  +GC+ VF  K  ADG+I  +KAR+VAQGFSQR GV Y   F+PV+  +++R + AL+ +   ++HQMDV  A+L+    D ++M+ P G      +  A +L K++YGLKQ++  W+  L   L S GF   ++D C+ V  +          G   VV IHVDD++ AG     I   K SI++RF +KD G +  + G+ V Q  A  + + QP Y
Sbjct:  146 PTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWE-LTELPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEHLACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEE---------DGNIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDA-KVWIGQPTY 397          
BLAST of mRNA_P-wetherbeei_contig6502.1.1 vs. uniprot
Match: A0A1M2VVQ8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VVQ8_TRAPU)

HSP 1 Score: 160 bits (405), Expect = 1.940e-41
Identity = 105/265 (39.62%), Postives = 146/265 (55.09%), Query Frame = 1
Query:    4 LTAAAAAVDGPVPQSVAEALEGSEVTEWMAAMQEELSANDRNKTWRRSSHVPHGRNVIGCRLVFAKKRAADGAILLYKARIVAQGFSQRPGVHYGAMFAPVMSADAMRFIFALAAEFDFEVHQMDVATAYLSAP--RTDLLWMRVPPGPFGFVDCA-ALQLLKAIYGLKQAANLWHFCLRSRLLSD--GFRAVDADCCVSVHGDVSPVVAAGGKGTYLVVGIHVDDLLAAGAPTSAITGFKASISQRFAMKDFGRVHTMFGILVQ 783
            + A  A V+G  P S+AEA    E   W  AM+EEL A + +KTWR     P G N++ CR VF  K+ A G +  Y+AR+VA+GFSQ PGV +   +APV    ++R   A AA  DFEVHQ+DV +AYL+      +++WM VPPG     D + AL+LL+ +YGLKQ+A  WH  L  R+L D  G    D D  V    D + ++         V+ +HVDDL    A  + I   KA + + F + D G +H + G  V+
Sbjct:  391 MAAQMAEVEGLDPCSLAEAKRRPEWPHWEEAMEEELHALEAHKTWRLEKPPP-GANIVSCRWVFHAKKDASGNVYRYRARLVARGFSQIPGVDFFDTYAPVAKTASIRIALAFAARHDFEVHQVDVKSAYLNGEFEENEVIWMAVPPGSNITNDKSLALRLLRPLYGLKQSARHWHKKLL-RVLRDKLGMSQSDVDQAVFYRVDGTDLI---------VIVVHVDDLTVVAATDALIREVKAKLREAFEISDEGEIHWILGFAVE 644          
BLAST of mRNA_P-wetherbeei_contig6502.1.1 vs. uniprot
Match: A0A060SJQ5_PYCCI (Uncharacterized protein (Fragment) n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SJQ5_PYCCI)

HSP 1 Score: 161 bits (408), Expect = 3.160e-41
Identity = 102/262 (38.93%), Postives = 150/262 (57.25%), Query Frame = 1
Query:   19 AAVDGPVPQSVAEALEGSEVTEWMAAMQEELSANDRNKTWRRSSHVPHGRNVIGCRLVFAKKRAADGAILLYKARIVAQGFSQRPGVHYGAMFAPVMSADAMRFIFALAAEFDFEVHQMDVATAYLSAPRTD--LLWMRVPPGPFGFVD-CAALQLLKAIYGLKQAANLWHFCLRSRLLSDGFRAVDADCCVSVHGDVSPVVAAGGKGTYLVV-GIHVDDLLAAGAPTSAITGFKASISQRFAMKDFGRVHTMFGILVQQNK 792
            A V+G  P+S+AEA++  E   W  AM+EEL A + +KTWR     P   N++ CR VF  K+ A G +  Y+AR+VA+GFSQ PGV +   +APV    ++R   A AA  +FEVHQ+DV +AYL+    D  ++WM VPPG     D   AL+LL+ +YGLKQ+A  WH  L  R+L +  R   +D   +V   V        +GT L+V  +HVDDL    +  + +   KA + + F + D G +H + G  V++++
Sbjct: 1009 AEVEGLDPRSLAEAMQRPEWPRWEEAMEEELRALEAHKTWRLERPPPDA-NIVSCRWVFHAKKDASGNVYRYRARLVARGFSQVPGVDFFDTYAPVAKTASIRVSLAFAARHNFEVHQLDVKSAYLNGEFEDNEVIWMAVPPGSNLTTDKTLALRLLRPLYGLKQSARHWHKKLL-RVLQEKLRMAQSDVDQAVFFRV--------EGTELIVIVVHVDDLTVVTSSDALVAEVKAKLREAFEISDEGEIHWILGFAVERDR 1260          
BLAST of mRNA_P-wetherbeei_contig6502.1.1 vs. uniprot
Match: A0A7D9ESN8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9ESN8_PARCT)

HSP 1 Score: 159 bits (403), Expect = 1.470e-40
Identity = 103/270 (38.15%), Postives = 152/270 (56.30%), Query Frame = 1
Query:   40 PQSVAEALEGSEVTEWMAAMQEELSANDRNKTWRRSSHVPHG--RNVIGCRLVFAKKRAADGAILLYKARIVAQGFSQRPGVHYGAMFAPVMSADAMRFIFALAAEFDFEVHQMDVATAYLSAPRTDLLWMRVPPGPFGFVDCAA----LQLLKAIYGLKQAANLWHFCLRSRLLSDGFRAVDADCCVSVHGDVSPVVAAGGKGTYLVVGIHVDDLLAAGAPTSAITGFKASISQRFAMKDFGRVHTMFGILVQQN-KAGTIRLPQPHYL 828
            P+SV  AL G    EW  AM  E S+   N TW     VP    +NV+G R V   KR  DG+I  +KAR+VAQG+SQ  G  Y  +F+PV    ++R + ALA E+D EVHQMDV TA+L+      ++M+ P G   FV+        +L K+IYGLKQ+A  W+  L   L S G+R   AD C+ V      V   GG+ +++++G++VDD++        +   K ++S+RF M D G VH + G+L++++ KA    + Q +Y+
Sbjct:  864 PESVQRALNGKYAKEWKDAMISEYSSLLENDTW---ELVPPSDDQNVVGSRWVLKVKRKEDGSIDRFKARVVAQGYSQTKGADYDEVFSPVARHTSLRTLLALANEYDLEVHQMDVRTAFLNGDIDCDIYMQQPEG---FVNPDKPDYLCKLQKSIYGLKQSARCWNDTLNGYLKSRGYRKSGADGCIYVKS----VKKDGGRISFVILGVYVDDIIPVSNDIQMLNSEKKALSERFKMDDRGEVHYLLGMLIKRDRKARVTTISQRNYV 1123          
BLAST of mRNA_P-wetherbeei_contig6502.1.1 vs. uniprot
Match: A0A177VM49_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VM49_9BASI)

HSP 1 Score: 159 bits (401), Expect = 2.620e-40
Identity = 94/254 (37.01%), Postives = 145/254 (57.09%), Query Frame = 1
Query:   40 PQSVAEALEGSEVTEWMAAMQEELSANDRNKTWRRSSHVPHGRNVIGCRLVFAKKRAADGAILLYKARIVAQGFSQRPGVHYGAMFAPVMSADAMRFIFALAAEFDFEVHQMDVATAYLSAPRTDLLWMRVPPG-PFGFVDCAALQLLKAIYGLKQAANLWHFCLRSRLLSDGFRAVDADCCVSVHGDVSPVVAAGGKGTYLVVGIHVDDLLAAGAPTSAITGFKASISQRFAMKDFGRVHTMFGILVQQNKAG 798
            P ++ +A+  ++   W+ AM+EE++++    TW     +P  R+++G R VF  K   DG +  YKAR+VAQGFSQ PGV +   ++PV     +R + ALAA   + VHQ+DV TAYL     D ++MR PP       +  A +L++AIYGLKQ+   W F LRS LL+ GF+   AD  + ++G  +  +         VV ++VDD+L  G     I GFKA +++RF MKD G +    G+ ++++  G
Sbjct:  635 PNTLKDAMRRTDWGLWLEAMKEEIASHTEMGTWV-LEELPADRDLVGSRWVFKLKLDTDGCVARYKARLVAQGFSQVPGVDFHETYSPVTRFVTIRTLLALAAYLGWHVHQLDVVTAYLYGFLKDTVYMRQPPAFEVPGQEHLACRLIRAIYGLKQSGREWFFTLRSALLALGFQQSIADQAIFIYGSGTEAI---------VVAVYVDDVLVFGKDEKEIVGFKAELAKRFRMKDQGTIGQFLGMKIERSVDG 878          
BLAST of mRNA_P-wetherbeei_contig6502.1.1 vs. uniprot
Match: A0A1M2V5M2_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V5M2_TRAPU)

HSP 1 Score: 157 bits (397), Expect = 3.410e-40
Identity = 106/275 (38.55%), Postives = 150/275 (54.55%), Query Frame = 1
Query:   19 AAVDGPVPQSVAEALEGSEVTEWMAAMQEELSANDRNKTWRRSSHVPHGRNVIGCRLVFAKKRAADGAILLYKARIVAQGFSQRPGVHYGAMFAPVMSADAMRFIFALAAEFDFEVHQMDVATAYLSAPRTD--LLWMRVPPGPFGFVD-CAALQLLKAIYGLKQAANLWHFCLRSRLLSDGFRAVDADCCVSVHGDVSPVVAAGGKGTYLVV-GIHVDDLLAAGAPTSAITGFKASISQRFAMKDFGRVHTMFGILVQQNKAGT-IRLPQPHYL 828
            A V+G  P+S+AEA    E   W  AM EEL A + ++TWR     P G N+I CR VF  K+ A G +  Y+AR+VA+GFSQ PGV +   +APV    ++R   A AA  DFEVHQ+DV +AYL+    D  ++WM VPPG     D    L+LL+ +YGLKQ+A  WH  L   +L +  R   +D        V   V    +GT L+V  +HVDDL    A  + +   KA + + F + D G +H + G  V ++++   + L Q  Y+
Sbjct:  373 AEVEGLDPRSLAEAKRRPEWPRWEEAMAEELCALEAHETWRLEKPPP-GANIISCRWVFHAKKDASGNVYRYRARLVARGFSQVPGVDFFDTYAPVAKTASIRVALAFAARHDFEVHQVDVKSAYLNGEFEDNEVIWMAVPPGSNLTNDKTLVLRLLRPLYGLKQSARHWHKKLL-HVLCEKLRMAQSD--------VDQAVFYRAEGTDLIVIVVHVDDLTVVTATVALVVEVKAKLREAFDISDKGEIHFILGFAVLRDRSNRRLSLSQTAYI 637          
BLAST of mRNA_P-wetherbeei_contig6502.1.1 vs. uniprot
Match: A0A2N9EBY4_FAGSY (Integrase catalytic domain-containing protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EBY4_FAGSY)

HSP 1 Score: 158 bits (399), Expect = 4.850e-40
Identity = 97/265 (36.60%), Postives = 148/265 (55.85%), Query Frame = 1
Query:   40 PQSVAEALEGSEVTEWMAAMQEELSANDRNKTWRRSSHVPHGRNVIGCRLVFAKKRAADGAILLYKARIVAQGFSQRPGVHYGAMFAPVMSADAMRFIFALAAEFDFEVHQMDVATAYLSAPRTDLLWMRVPPG-PFGFVDCAALQLLKAIYGLKQAANLWHFCLRSRLLSDGFRAVDADCCVSVHGDVSPVVAAGGKGTYLVVGIHVDDLLAAGAPTSAITGFKASISQRFAMKDFGRVHTMFGILVQQNKA-GTIRLPQPHYL 828
            P S ++A++ S+ T+W+ AM +EL + D N  W     +P+G   IGC+ VF  K+ + G I  YKAR+VA+GFSQ+ GV Y   F+PV S D+ R + AL A FDFE+HQMDV TA+L+   T+ ++M  P G      +    +L K+IYGLKQA+  W+    + + S GF+    D C+ +         +G K  +LV  ++VDD+L A      +   K  +   F MKD G    + GI + ++++ G + L Q  Y+
Sbjct:  636 PSSYSQAIQSSQSTKWIDAMVDELKSMDNNNVWDLVD-LPNGCRPIGCKWVFKTKKDSTGKIERYKARLVAKGFSQKEGVDYKETFSPVSSKDSFRIVMALVAHFDFELHQMDVKTAFLNGDLTEDVYMLQPDGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYLK-------ISGSKIIFLV--LYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYI 890          
BLAST of mRNA_P-wetherbeei_contig6502.1.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 158 bits (399), Expect = 4.930e-40
Identity = 96/263 (36.50%), Postives = 144/263 (54.75%), Query Frame = 1
Query:   40 PQSVAEALEGSEVTEWMAAMQEELSANDRNKTWRRSSHVPHGRNVIGCRLVFAKKRAADGAILLYKARIVAQGFSQRPGVHYGAMFAPVMSADAMRFIFALAAEFDFEVHQMDVATAYLSAPRTDLLWMRVPPG-PFGFVDCAALQLLKAIYGLKQAANLWHFCLRSRLLSDGFRAVDADCCVSVHGDVSPVVAAGGKGTYLVVGIHVDDLLAAGAPTSAITGFKASISQRFAMKDFGRVHTMFGILVQQNKAGTIRLPQPHY 825
            P +V+EAL G     W  AMQ+E+ +   +  W   + +P  R  +GC+ VF  K  ADG+I  +KAR+VAQGFSQR GV Y   F+PV+  + +R + AL+ +   ++HQMDV  A+L+    D ++M+ P G      +    +L K++YGLKQ++  W+  L   L S GF   ++D C+ V  +          G   VV IHVDD++ AG     I   K SI++RF +KD G +  + G+ V Q  A  + + QP Y
Sbjct:  760 PTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWE-LTELPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFEKIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEHLVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEE---------DGDIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDA-KVWIGQPTY 1011          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6502.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y9ZVS1_9AGAM4.720e-4338.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A075B3L7_ROZAC2.340e-4234.33Integrase, catalytic core domain-containing protei... [more]
A0A7D9HZ03_PARCT1.610e-4136.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VVQ8_TRAPU1.940e-4139.62Retrovirus-related Pol polyprotein from transposon... [more]
A0A060SJQ5_PYCCI3.160e-4138.93Uncharacterized protein (Fragment) n=1 Tax=Pycnopo... [more]
A0A7D9ESN8_PARCT1.470e-4038.15Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A177VM49_9BASI2.620e-4037.01Integrase catalytic domain-containing protein n=2 ... [more]
A0A1M2V5M2_TRAPU3.410e-4038.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9EBY4_FAGSY4.850e-4036.60Integrase catalytic domain-containing protein n=4 ... [more]
A0A6S7HEL0_PARCT4.930e-4036.50Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6502contigP-wetherbeei_contig6502:2587..3414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog65672.G4T9D2
PFAMsRVT_2,gag_pre-integrs,rve
Model size828
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.31e-40
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,227R3@155619|Agaricomycetes,3H58M@355688|Agaricomycetes incertae sedis
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size828
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186918.4481132-CDS-P-wetherbeei_contig6502:2586..34141683186918.4481132-CDS-P-wetherbeei_contig6502:2586..3414Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6502 2587..3414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6502.1.1prot_P-wetherbeei_contig6502.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6502 2587..3414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6502.1.1

>prot_P-wetherbeei_contig6502.1.1 ID=prot_P-wetherbeei_contig6502.1.1|Name=mRNA_P-wetherbeei_contig6502.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=276bp
ILTAAAAAVDGPVPQSVAEALEGSEVTEWMAAMQEELSANDRNKTWRRSS
HVPHGRNVIGCRLVFAKKRAADGAILLYKARIVAQGFSQRPGVHYGAMFA
PVMSADAMRFIFALAAEFDFEVHQMDVATAYLSAPRTDLLWMRVPPGPFG
FVDCAALQLLKAIYGLKQAANLWHFCLRSRLLSDGFRAVDADCCVSVHGD
VSPVVAAGGKGTYLVVGIHVDDLLAAGAPTSAITGFKASISQRFAMKDFG
RVHTMFGILVQQNKAGTIRLPQPHYL
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mRNA from alignment at P-wetherbeei_contig6502:2587..3414+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6502.1.1 ID=mRNA_P-wetherbeei_contig6502.1.1|Name=mRNA_P-wetherbeei_contig6502.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig6502:2587..3414+ (Phaeothamnion wetherbeei SAG_119_79)
ATCCTCACGGCAGCAGCGGCGGCGGTTGATGGCCCTGTGCCGCAGTCAGT AGCGGAGGCGTTGGAGGGATCGGAGGTAACGGAGTGGATGGCGGCGATGC AGGAAGAGCTGTCTGCAAATGACCGCAACAAGACATGGCGCCGCTCGTCG CATGTTCCTCATGGTCGCAACGTCATCGGCTGTCGGTTAGTGTTTGCGAA AAAGCGGGCGGCGGACGGGGCCATTCTGCTCTACAAAGCCCGGATTGTGG CGCAGGGCTTCTCGCAGCGGCCGGGAGTGCACTATGGCGCAATGTTTGCG CCGGTCATGTCGGCCGACGCGATGCGGTTCATCTTTGCGCTGGCGGCGGA GTTTGACTTTGAGGTGCACCAGATGGACGTAGCAACGGCATATCTCAGTG CCCCGCGCACTGACCTTTTGTGGATGCGCGTGCCGCCCGGGCCTTTCGGT TTCGTGGACTGTGCGGCGCTGCAGTTGCTGAAGGCTATCTACGGCCTGAA GCAAGCGGCGAACCTTTGGCATTTCTGCTTGCGTTCTCGGCTTTTGAGCG ACGGCTTTCGGGCAGTGGACGCTGACTGCTGTGTTTCCGTGCACGGCGAC GTGTCTCCGGTGGTGGCGGCCGGCGGGAAGGGCACCTATCTCGTAGTCGG CATCCACGTTGACGATCTTCTCGCCGCCGGCGCCCCAACATCGGCCATCA CGGGCTTCAAGGCGTCCATCTCGCAGCGCTTTGCCATGAAGGACTTTGGG CGCGTCCACACGATGTTTGGCATCCTCGTTCAGCAAAACAAGGCGGGAAC TATCCGCCTGCCGCAGCCGCACTACCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6502:2587..3414+

>mRNA_P-wetherbeei_contig6502.1.1 ID=mRNA_P-wetherbeei_contig6502.1.1|Name=mRNA_P-wetherbeei_contig6502.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig6502:2587..3414+ (Phaeothamnion wetherbeei SAG_119_79)
ATCCTCACGGCAGCAGCGGCGGCGGTTGATGGCCCTGTGCCGCAGTCAGT
AGCGGAGGCGTTGGAGGGATCGGAGGTAACGGAGTGGATGGCGGCGATGC
AGGAAGAGCTGTCTGCAAATGACCGCAACAAGACATGGCGCCGCTCGTCG
CATGTTCCTCATGGTCGCAACGTCATCGGCTGTCGGTTAGTGTTTGCGAA
AAAGCGGGCGGCGGACGGGGCCATTCTGCTCTACAAAGCCCGGATTGTGG
CGCAGGGCTTCTCGCAGCGGCCGGGAGTGCACTATGGCGCAATGTTTGCG
CCGGTCATGTCGGCCGACGCGATGCGGTTCATCTTTGCGCTGGCGGCGGA
GTTTGACTTTGAGGTGCACCAGATGGACGTAGCAACGGCATATCTCAGTG
CCCCGCGCACTGACCTTTTGTGGATGCGCGTGCCGCCCGGGCCTTTCGGT
TTCGTGGACTGTGCGGCGCTGCAGTTGCTGAAGGCTATCTACGGCCTGAA
GCAAGCGGCGAACCTTTGGCATTTCTGCTTGCGTTCTCGGCTTTTGAGCG
ACGGCTTTCGGGCAGTGGACGCTGACTGCTGTGTTTCCGTGCACGGCGAC
GTGTCTCCGGTGGTGGCGGCCGGCGGGAAGGGCACCTATCTCGTAGTCGG
CATCCACGTTGACGATCTTCTCGCCGCCGGCGCCCCAACATCGGCCATCA
CGGGCTTCAAGGCGTCCATCTCGCAGCGCTTTGCCATGAAGGACTTTGGG
CGCGTCCACACGATGTTTGGCATCCTCGTTCAGCAAAACAAGGCGGGAAC
TATCCGCCTGCCGCAGCCGCACTACCTC
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