mRNA_P-wetherbeei_contig6473.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6473.1.1
Unique NamemRNA_P-wetherbeei_contig6473.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6473.1.1 vs. uniprot
Match: A0A835Z5E2_9STRA (Peroxisomal membrane protein-related n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5E2_9STRA)

HSP 1 Score: 158 bits (399), Expect = 2.880e-47
Identity = 77/99 (77.78%), Postives = 85/99 (85.86%), Query Frame = 1
Query:    1 QVIWNPIFGVMFFSYLGLTEGKSPNQIADKIKADLKTAVVGSWTVWIPAHTINFRFVPPSQRLLYINSIQIGYNVFLSFIGNKDASAEAKEGEVVTKLE 297
            Q IWNPIFG+MFFSYLGLTEGKS +QI  KIKADL TAV+GSWTVWIPAHTINF+FVP SQRLLYINSIQIGYNVFLSF+GNK A  +A    V+ K+E
Sbjct:   92 QTIWNPIFGIMFFSYLGLTEGKSVDQIYQKIKADLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINSIQIGYNVFLSFLGNKKAPEDA----VIEKVE 186          
BLAST of mRNA_P-wetherbeei_contig6473.1.1 vs. uniprot
Match: D8LGB2_ECTSI (Peroxisomal membrane protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB2_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 2.090e-43
Identity = 69/95 (72.63%), Postives = 80/95 (84.21%), Query Frame = 1
Query:    1 QVIWNPIFGVMFFSYLGLTEGKSPNQIADKIKADLKTAVVGSWTVWIPAHTINFRFVPPSQRLLYINSIQIGYNVFLSFIGNKDASAEAKEGEVV 285
            Q IWNPIFGVMFF+YLGL EGKS + I  KIK DL TAV+GSWTVWIPAHTINF+FVP SQRLLYIN+IQIGYN+FLSF+GNK A  ++ +  +V
Sbjct:   92 QTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQIGYNIFLSFLGNKKADDDSVKSALV 186          
BLAST of mRNA_P-wetherbeei_contig6473.1.1 vs. uniprot
Match: A0A7S2LHQ9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LHQ9_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.710e-43
Identity = 67/93 (72.04%), Postives = 76/93 (81.72%), Query Frame = 1
Query:    1 QVIWNPIFGVMFFSYLGLTEGKSPNQIADKIKADLKTAVVGSWTVWIPAHTINFRFVPPSQRLLYINSIQIGYNVFLSFIGNKDASAEAKEGE 279
            Q IWNPIFG+MFF YL L EGKS +    KI++DLKTAV+GSW VW+PAHTINF F+PPSQRLLYINSIQIGYNVFLSF+GNK    E  EG+
Sbjct:   92 QTIWNPIFGLMFFGYLNLVEGKSFDDYKKKIQSDLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQIGYNVFLSFLGNKKVDGEEAEGD 184          
BLAST of mRNA_P-wetherbeei_contig6473.1.1 vs. uniprot
Match: A0A6U6CAW4_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6CAW4_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.960e-43
Identity = 67/94 (71.28%), Postives = 78/94 (82.98%), Query Frame = 1
Query:    1 QVIWNPIFGVMFFSYLGLTEGKSPNQIADKIKADLKTAVVGSWTVWIPAHTINFRFVPPSQRLLYINSIQIGYNVFLSFIGNKDASAEAKEGEV 282
            Q IWNPIFG+MFF YL + EGKS     +KIKADLKTAV+GSW VW+PAHTINF FVPPSQRLLYIN+IQIGYNVFLSF+GNKD   + ++ E+
Sbjct:   98 QTIWNPIFGLMFFGYLNIMEGKSFETYTNKIKADLKTAVMGSWAVWVPAHTINFAFVPPSQRLLYINTIQIGYNVFLSFLGNKDVEEDEEKKEL 191          
BLAST of mRNA_P-wetherbeei_contig6473.1.1 vs. uniprot
Match: K0SKR3_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SKR3_THAOC)

HSP 1 Score: 147 bits (371), Expect = 3.490e-43
Identity = 66/91 (72.53%), Postives = 75/91 (82.42%), Query Frame = 1
Query:    1 QVIWNPIFGVMFFSYLGLTEGKSPNQIADKIKADLKTAVVGSWTVWIPAHTINFRFVPPSQRLLYINSIQIGYNVFLSFIGNKDASAEAKE 273
            Q +WNPIFG+MFF YL + EGKS  +   K+KADLKTAV+GSW VW+PAHTINF FVPPSQRLLYINSIQIGYN+FLSF+GNK    E KE
Sbjct:   82 QTMWNPIFGLMFFGYLNVCEGKSFEEYTKKVKADLKTAVMGSWAVWVPAHTINFAFVPPSQRLLYINSIQIGYNIFLSFLGNKKVDGEDKE 172          
BLAST of mRNA_P-wetherbeei_contig6473.1.1 vs. uniprot
Match: A0A7R9Z9F5_9STRA (Hypothetical protein n=3 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9Z9F5_9STRA)

HSP 1 Score: 148 bits (373), Expect = 5.290e-43
Identity = 68/91 (74.73%), Postives = 75/91 (82.42%), Query Frame = 1
Query:    1 QVIWNPIFGVMFFSYLGLTEGKSPNQIADKIKADLKTAVVGSWTVWIPAHTINFRFVPPSQRLLYINSIQIGYNVFLSFIGNKDASAEAKE 273
            Q IWNPIFG MFF YL L EGKS     +KIKADLKTAV+GSW VW+PAHTINF FVPPSQRLLYIN+IQIGYNVFLSF+GNK+   E K+
Sbjct:  119 QTIWNPIFGCMFFGYLNLMEGKSFEDYKNKIKADLKTAVMGSWAVWVPAHTINFAFVPPSQRLLYINTIQIGYNVFLSFLGNKEVDGEEKK 209          
BLAST of mRNA_P-wetherbeei_contig6473.1.1 vs. uniprot
Match: A0A7S2V4A9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4A9_9STRA)

HSP 1 Score: 147 bits (370), Expect = 6.860e-43
Identity = 65/91 (71.43%), Postives = 78/91 (85.71%), Query Frame = 1
Query:    1 QVIWNPIFGVMFFSYLGLTEGKSPNQIADKIKADLKTAVVGSWTVWIPAHTINFRFVPPSQRLLYINSIQIGYNVFLSFIGNKDASAEAKE 273
            Q+ WNPIFG +FF+YLGL EGKS  +I +KIK+DLKTAV+GSWTVW+PAH INF+FVP SQRLLYIN+IQIGYN+FLSF+GNK A    K+
Sbjct:   92 QLFWNPIFGTVFFTYLGLAEGKSGGEIVNKIKSDLKTAVMGSWTVWVPAHIINFKFVPSSQRLLYINTIQIGYNIFLSFLGNKSADEPEKK 182          
BLAST of mRNA_P-wetherbeei_contig6473.1.1 vs. uniprot
Match: A0A7S2RA66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RA66_9STRA)

HSP 1 Score: 147 bits (370), Expect = 8.190e-43
Identity = 66/83 (79.52%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    1 QVIWNPIFGVMFFSYLGLTEGKSPNQIADKIKADLKTAVVGSWTVWIPAHTINFRFVPPSQRLLYINSIQIGYNVFLSFIGNK 249
            QV WNP FG+MFF+YLGL EGKS   I  KIKADLKTAV+GSW VW+PAHTINF F+PPSQRLLYINSIQIGYN+FLSF+GNK
Sbjct:  101 QVFWNPCFGIMFFTYLGLAEGKSFADIMKKIKADLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQIGYNIFLSFLGNK 183          
BLAST of mRNA_P-wetherbeei_contig6473.1.1 vs. uniprot
Match: B8BUR3_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUR3_THAPS)

HSP 1 Score: 146 bits (368), Expect = 9.950e-43
Identity = 66/93 (70.97%), Postives = 76/93 (81.72%), Query Frame = 1
Query:    1 QVIWNPIFGVMFFSYLGLTEGKSPNQIADKIKADLKTAVVGSWTVWIPAHTINFRFVPPSQRLLYINSIQIGYNVFLSFIGNKDASAEAKEGE 279
            Q IWNPIFG+MFF YL + EGKS     +KIKADLKTAV+GSW VW+PAHTINF F+PP QRLLYINSIQIGYNVFLSF+GNK    +A++ E
Sbjct:   77 QTIWNPIFGLMFFGYLNVMEGKSFEDYKNKIKADLKTAVMGSWAVWVPAHTINFAFIPPQQRLLYINSIQIGYNVFLSFLGNKKVEGDAEKKE 169          
BLAST of mRNA_P-wetherbeei_contig6473.1.1 vs. uniprot
Match: A0A6S9LPN5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LPN5_HETAK)

HSP 1 Score: 145 bits (366), Expect = 2.620e-42
Identity = 66/91 (72.53%), Postives = 75/91 (82.42%), Query Frame = 1
Query:    1 QVIWNPIFGVMFFSYLGLTEGKSPNQIADKIKADLKTAVVGSWTVWIPAHTINFRFVPPSQRLLYINSIQIGYNVFLSFIGNKDASAEAKE 273
            Q+IWNPIFGV FFS+LG  EGKS  +I DKIK DL TAV GSWTVW+PAH INFRF+P SQRLLYINSIQIGYN+FLSF+GNK    E ++
Sbjct:   92 QLIWNPIFGVCFFSFLGAAEGKSGGEIVDKIKNDLMTAVTGSWTVWVPAHIINFRFIPSSQRLLYINSIQIGYNMFLSFLGNKKVDGEEEK 182          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6473.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5E2_9STRA2.880e-4777.78Peroxisomal membrane protein-related n=1 Tax=Tribo... [more]
D8LGB2_ECTSI2.090e-4372.63Peroxisomal membrane protein-related n=1 Tax=Ectoc... [more]
A0A7S2LHQ9_9STRA2.710e-4372.04Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A6U6CAW4_9STRA2.960e-4371.28Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
K0SKR3_THAOC3.490e-4372.53Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7R9Z9F5_9STRA5.290e-4374.73Hypothetical protein n=3 Tax=Odontellaceae TaxID=2... [more]
A0A7S2V4A9_9STRA6.860e-4371.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2RA66_9STRA8.190e-4379.52Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B8BUR3_THAPS9.950e-4370.97Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A6S9LPN5_HETAK2.620e-4272.53Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6473contigP-wetherbeei_contig6473:67..366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0SKR3
PFAMsMpv17_PMP22
Model size300
Max annot lvl2836|Bacillariophyta
KEGG koko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.35e-37
EggNOG OGsKOG1944@1|root,KOG1944@2759|Eukaryota,2XAQF@2836|Bacillariophyta
DescriptionBelongs to the peroxisomal membrane protein PXMP2 4 family
Cds size270
COG categoryS
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186916.0673006-UTR-P-wetherbeei_contig6473:66..961683186916.0673006-UTR-P-wetherbeei_contig6473:66..96Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6473 67..96 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186916.076905-CDS-P-wetherbeei_contig6473:96..3661683186916.076905-CDS-P-wetherbeei_contig6473:96..366Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6473 97..366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6473.1.1prot_P-wetherbeei_contig6473.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6473 97..366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6473.1.1

>prot_P-wetherbeei_contig6473.1.1 ID=prot_P-wetherbeei_contig6473.1.1|Name=mRNA_P-wetherbeei_contig6473.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MFFSYLGLTEGKSPNQIADKIKADLKTAVVGSWTVWIPAHTINFRFVPPS
QRLLYINSIQIGYNVFLSFIGNKDASAEAKEGEVVTKLE*
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mRNA from alignment at P-wetherbeei_contig6473:67..366+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6473.1.1 ID=mRNA_P-wetherbeei_contig6473.1.1|Name=mRNA_P-wetherbeei_contig6473.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig6473:67..366+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGATCTGGAACCCTATCTTCGGCGTCATGTTCTTCAGTTACCTTGG ACTGACGGAGGGCAAGTCGCCCAACCAGATCGCCGACAAGATCAAAGCCG ACCTCAAGACGGCCGTGGTCGGCTCGTGGACCGTCTGGATCCCGGCCCAC ACCATCAACTTCCGGTTTGTGCCGCCGTCGCAGCGGCTGCTGTACATCAA CTCCATCCAAATCGGCTACAACGTTTTCCTGTCGTTCATTGGCAACAAGG ATGCGTCGGCCGAGGCCAAAGAGGGGGAGGTGGTCACCAAGCTCGAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6473:67..366+

>mRNA_P-wetherbeei_contig6473.1.1 ID=mRNA_P-wetherbeei_contig6473.1.1|Name=mRNA_P-wetherbeei_contig6473.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig6473:67..366+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCTTCAGTTACCTTGGACTGACGGAGGGCAAGTCGCCCAACCAGAT
CGCCGACAAGATCAAAGCCGACCTCAAGACGGCCGTGGTCGGCTCGTGGA
CCGTCTGGATCCCGGCCCACACCATCAACTTCCGGTTTGTGCCGCCGTCG
CAGCGGCTGCTGTACATCAACTCCATCCAAATCGGCTACAACGTTTTCCT
GTCGTTCATTGGCAACAAGGATGCGTCGGCCGAGGCCAAAGAGGGGGAGG
TGGTCACCAAGCTCGAGTAA
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