mRNA_P-wetherbeei_contig6419.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6419.1.1
Unique NamemRNA_P-wetherbeei_contig6419.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6419.1.1 vs. uniprot
Match: A0A7S0TPG2_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TPG2_HEMAN)

HSP 1 Score: 154 bits (389), Expect = 7.950e-45
Identity = 77/125 (61.60%), Postives = 95/125 (76.00%), Query Frame = 2
Query:  179 LPMVFVSAAEARWTFDGAFVGTPVEWLHAYLVAKRAVEDKLLNDLGGGDQPSLRPIVLRPSLVWTPSRPFALPPVAAFTIGNFLGLPFVDRPVRVDTLAAAAMAAVGDQAARGVFDYSRMEALAR 553
            LP  FVSAAEARWTFDGAF GTPVEWLH YL+AKRAVE  L+++ G     +LRPI++RPSLVWT S+P +  PV AFT+GN LGLPFVDRPV+V TLA + + A+ D    G+FD+  ME +A+
Sbjct:   19 LPFAFVSAAEARWTFDGAFKGTPVEWLHRYLIAKRAVESDLVDNHGKAG--ALRPIIVRPSLVWTWSKPASFLPVGAFTVGNALGLPFVDRPVQVSTLAKSIVGAILDPKESGIFDFRGMERVAK 141          
BLAST of mRNA_P-wetherbeei_contig6419.1.1 vs. uniprot
Match: A0A6H5KTE1_9PHAE (NAD(P)-bd_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTE1_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.560e-41
Identity = 80/123 (65.04%), Postives = 96/123 (78.05%), Query Frame = 2
Query:  182 PMVFVSAAEARWTFDGAFVGTPVEWLHAYLVAKRAVEDKLLNDLGGGDQPSLRPIVLRPSLVWTPSRPFALPPVAAFTIGNFLGLPFVDRPVRVDTLAAAAMAAVGDQAARGVFDYSRMEALA 550
            P VF+SAAEA+W FDG F G+PV +LH YLVAKRAVED+LLN+     +PSLR +VLRPSLVWT  RP AL PVAAF IG+ LGLPF+DRPV V+TLA+AA+ A+ D + RGV D+  ME LA
Sbjct:  150 PFVFISAAEAKWGFDGIFEGSPVGFLHDYLVAKRAVEDELLNN-----KPSLRGVVLRPSLVWTKRRPGALLPVAAFQIGSRLGLPFIDRPVHVETLASAAVEALFDSSVRGVQDWRGMEKLA 267          
BLAST of mRNA_P-wetherbeei_contig6419.1.1 vs. uniprot
Match: L1I751_GUITC (Epimerase domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I751_GUITC)

HSP 1 Score: 142 bits (358), Expect = 1.240e-38
Identity = 69/126 (54.76%), Postives = 94/126 (74.60%), Query Frame = 2
Query:  179 LPMVFVSAAEARWTFDGAFVGTPVEWLHAYLVAKRAVEDKLLNDLGGGDQPSLRPIVLRPSLVWTPSRPFALPPVAAFTIGNFLGLPFVDRPVRVDTLAAAAMAAVGDQAARGVFDYSRMEALARQ 556
            +P  FVSAAE RWTFD +F GTP++WL  YL+AKRAVE +L++  G G    L+PI++RPSL+WT  RP AL PVAAFT GN LGLPFVD+PV+V TL+ A +  +  ++ +GV+++  ME LA++
Sbjct:  143 IPFAFVSAAEVRWTFDKSFEGTPLDWLRRYLIAKRAVESELIDVYGAGGL--LKPIIVRPSLIWTWDRPGALLPVAAFTFGNRLGLPFVDKPVQVSTLSKAILKGLESKSEKGVYNFEGMERLAKE 266          
BLAST of mRNA_P-wetherbeei_contig6419.1.1 vs. uniprot
Match: A0A7S0SD09_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SD09_9CHLO)

HSP 1 Score: 130 bits (326), Expect = 2.700e-35
Identity = 73/123 (59.35%), Postives = 85/123 (69.11%), Query Frame = 2
Query:  182 PMVFVSAAEARWTFDGAFVGTPVEWLHAYLVAKRAVEDKLLNDLGGGDQPSLRPIVLRPSLVWTPSRPFALPPVAAFTIGNFLGLPFVDRPVRVDTLAAAAMAAVGDQAARGVFDYSRMEALA 550
            P VF+SAAEA+WTF       PV+WL  YLVAKRAVE K+ +    G    +R   LRPSLV+T  RP ALP VAAF +GN LGLPFVDRPV VDTLAAAA+AAV D+   G+ D+  ME LA
Sbjct:   23 PFVFISAAEAKWTFKA-----PVQWLEEYLVAKRAVETKVSDMTASG---KIRGSCLRPSLVYTFDRPQALPAVAAFMVGNALGLPFVDRPVTVDTLAAAAVAAVEDRNVSGILDFREMERLA 137          
BLAST of mRNA_P-wetherbeei_contig6419.1.1 vs. uniprot
Match: A0A835YPV7_9STRA (NAD(P)-bd_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPV7_9STRA)

HSP 1 Score: 132 bits (333), Expect = 9.410e-35
Identity = 73/128 (57.03%), Postives = 87/128 (67.97%), Query Frame = 2
Query:  182 PMVFVSAAEARWTFDGAFVGTPVEWLHAYLVAKRAVEDKLLNDLGGGDQPSLRPIVLRPSLVWTPSRPFALPPVAAFTIGNFLGLPFVDRPVRVDTLAAAAMAAVGDQAARGVFDYSRMEALARQRKR 565
            P VFVSAAEA WT D  F GTP+ +L  YLVAKRA E++LL+D       +LR  VLRPSLVWT  RP ALP V+AFT  N +G+PF+DRPV V TLAAAA+ A+ D +  G  +Y  ME LA Q  R
Sbjct:  158 PFVFVSAAEAAWTKDALFEGTPLAFLRRYLVAKRAAEERLLSDAR-----NLRATVLRPSLVWTKERPAALPAVSAFTAANAIGIPFIDRPVSVTTLAAAAVEALEDASCSGTQNYKGMERLAAQAMR 280          
BLAST of mRNA_P-wetherbeei_contig6419.1.1 vs. uniprot
Match: C1E365_MICCC (Epimerase domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E365_MICCC)

HSP 1 Score: 123 bits (308), Expect = 9.800e-31
Identity = 69/126 (54.76%), Postives = 82/126 (65.08%), Query Frame = 2
Query:  179 LPMVFVSAAEARWTFDGAFVGTPVEWLHAYLVAKRAVEDKLLNDLGGGDQPSLRPIVLRPSLVWTPSRPFALPPVAAFTIGNFLGLPFVDRPVRVDTLAAAAMAAVGDQAARGVFDYSRMEALARQ 556
            +P VFVSAAEARWTF       PV WL  YL+AKRAVE +L      G+   +R   LRPSLV+   +P A+P V AF +GN LGLPFVDRPV VDTLA+AA+  V D  + G  DY  ME LAR+
Sbjct:  196 VPFVFVSAAEARWTFKA-----PVAWLEDYLIAKRAVEARLREMTDAGE---VRAACLRPSLVYCLDKPAAMPAVGAFYLGNLLGLPFVDRPVTVDTLASAAVRCVEDGRSTGALDYREMERLARE 313          
BLAST of mRNA_P-wetherbeei_contig6419.1.1 vs. uniprot
Match: A0A7S0W2Z8_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W2Z8_9CRYP)

HSP 1 Score: 116 bits (291), Expect = 1.790e-30
Identity = 59/103 (57.28%), Postives = 75/103 (72.82%), Query Frame = 2
Query:  245 PVEWLHAYLVAKRAVEDKLLNDLGGGDQPSLRPIVLRPSLVWTPSRPFALPPVAAFTIGNFLGLPFVDRPVRVDTLAAAAMAAVGDQAARGVFDYSRMEALAR 553
            P EWLH YL+AKRAVE  L+++ G     +LRPI++RPSLVWT S+P +  PV AFT+GN LGLPFVDRPV+V TLA + + A+ D    G+FDY  ME +AR
Sbjct:    5 PAEWLHRYLIAKRAVESDLIDNHGKSG--ALRPIIVRPSLVWTWSKPASFLPVGAFTVGNALGLPFVDRPVQVSTLAKSVVGAILDPKESGIFDYKGMERVAR 105          
BLAST of mRNA_P-wetherbeei_contig6419.1.1 vs. uniprot
Match: C1N367_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N367_MICPC)

HSP 1 Score: 117 bits (294), Expect = 1.540e-28
Identity = 67/127 (52.76%), Postives = 82/127 (64.57%), Query Frame = 2
Query:  170 RRCLPMVFVSAAEARWTFDGAFVGTPVEWLHAYLVAKRAVEDKLLNDLGGGDQPSLRPIVLRPSLVWTPSRPFALPPVAAFTIGNFLGLPFVDRPVRVDTLAAAAMAAVGDQAARGVFDYSRMEALA 550
            +R  P VFVSAAEA+W F       PVEWL  YLVAKRAVE+KL      G   +LR  +LRPSLV+   +P + P VAAF IGN +GLPFVDRPV    LA AA+ AV ++A  G+ DY  +E L+
Sbjct:  201 KRSPPFVFVSAAEAKWDFRA-----PVEWLEEYLVAKRAVEEKLGAMTAAG---ALRATILRPSLVYAFDKPASFPAVAAFVIGNAIGLPFVDRPVTAGALATAAVRAVKEEAVEGILDYVGIEELS 319          
BLAST of mRNA_P-wetherbeei_contig6419.1.1 vs. uniprot
Match: A0A7S0QX38_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QX38_9CHLO)

HSP 1 Score: 114 bits (285), Expect = 3.350e-27
Identity = 65/123 (52.85%), Postives = 85/123 (69.11%), Query Frame = 2
Query:  182 PMVFVSAAEARWTFDGAFVGTPVEWLHAYLVAKRAVEDKLLNDLGGGDQPSLRPIVLRPSLVWTPSRPFALPPVAAFTIGNFLGLPFVDRPVRVDTLAAAAMAAVGDQAARGVFDYSRMEALA 550
            P VFVSAAEA WT D      PV +L +YL AKRAVED+LLN+ G  ++   RP++LRPSLV++  R  +LP V AF +GN L LP +DRPV V+TLA AA+ A+ D++  GV ++  ME LA
Sbjct:  216 PFVFVSAAEAGWTQD-----PPVPFLVSYLKAKRAVEDELLNNYGASNK--FRPVILRPSLVYSMDRTASLPAVGAFFLGNMLKLPGIDRPVLVETLAKAALKAMEDESVAGVQNFEAMEDLA 331          
BLAST of mRNA_P-wetherbeei_contig6419.1.1 vs. uniprot
Match: A0A7S4JXS3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JXS3_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.160e-24
Identity = 62/133 (46.62%), Postives = 84/133 (63.16%), Query Frame = 2
Query:  170 RRCLPMVFVSAAEARWTF--DGAFVGTPVE--WLHAYLVAKRAVEDKL--LNDLGGGDQPSLRPIVLRPSLVWTPSRPFALPPVAAFTIGNFLGLPFVDRPVRVDTLAAAAMAAVGDQAARGVFDYSRMEALA 550
            ++ LP VF+SAAEA W     G FV   +   W+  YL AKRAVE KL  +   GGG    +RP++ RPSL+++  RP +LPPVAAF  GN +GLPFVDRPV V  L+ A + A+G     GV  ++ ++AL+
Sbjct:   72 KKALPFVFLSAAEAGWPDVPGGKFVENYLAPGWMRRYLSAKRAVEGKLEEVRQAGGGR--IVRPVIFRPSLIYSLDRPASLPPVAAFFAGNRIGLPFVDRPVTVQALSCAVVRAIGRDDVVGVQRFADVDALS 202          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6419.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0TPG2_HEMAN7.950e-4561.60Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A6H5KTE1_9PHAE1.560e-4165.04NAD(P)-bd_dom domain-containing protein n=2 Tax=Ec... [more]
L1I751_GUITC1.240e-3854.76Epimerase domain-containing protein n=1 Tax=Guilla... [more]
A0A7S0SD09_9CHLO2.700e-3559.35Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A835YPV7_9STRA9.410e-3557.03NAD(P)-bd_dom domain-containing protein n=1 Tax=Tr... [more]
C1E365_MICCC9.800e-3154.76Epimerase domain-containing protein n=1 Tax=Microm... [more]
A0A7S0W2Z8_9CRYP1.790e-3057.28Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
C1N367_MICPC1.540e-2852.76Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7S0QX38_9CHLO3.350e-2752.85Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S4JXS3_9STRA4.160e-2446.62Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6419contigP-wetherbeei_contig6419:118..1286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJU3
PFAMsEpimerase,NAD_binding_10
Model size568
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016491,GO:0016651,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901004,GO:1901006,GO:1901576,GO:1901661,GO:1901663
Exons3
Evalue4.81e-43
EggNOG OGsCOG0702@1|root,KOG4288@2759|Eukaryota
Descriptionubiquinone-6 biosynthetic process
Cds size465
COG categoryGM
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186912.2489629-UTR-P-wetherbeei_contig6419:117..2201683186912.2489629-UTR-P-wetherbeei_contig6419:117..220Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6419 118..220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186912.2678697-CDS-P-wetherbeei_contig6419:220..2921683186912.2678697-CDS-P-wetherbeei_contig6419:220..292Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6419 221..292 +
1683186912.2783604-CDS-P-wetherbeei_contig6419:542..6651683186912.2783604-CDS-P-wetherbeei_contig6419:542..665Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6419 543..665 +
1683186912.2879965-CDS-P-wetherbeei_contig6419:1016..12861683186912.2879965-CDS-P-wetherbeei_contig6419:1016..1286Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6419 1017..1286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6419.1.1prot_P-wetherbeei_contig6419.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6419 221..1286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6419.1.1

>prot_P-wetherbeei_contig6419.1.1 ID=prot_P-wetherbeei_contig6419.1.1|Name=mRNA_P-wetherbeei_contig6419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
MTRSHVRRRWRRPKRSQPRHDQRRCLPMVFVSAAEARWTFDGAFVGTPVE
WLHAYLVAKRAVEDKLLNDLGGGDQPSLRPIVLRPSLVWTPSRPFALPPV
AAFTIGNFLGLPFVDRPVRVDTLAAAAMAAVGDQAARGVFDYSRMEALAR
QRKR*
back to top

mRNA from alignment at P-wetherbeei_contig6419:118..1286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6419.1.1 ID=mRNA_P-wetherbeei_contig6419.1.1|Name=mRNA_P-wetherbeei_contig6419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1169bp|location=Sequence derived from alignment at P-wetherbeei_contig6419:118..1286+ (Phaeothamnion wetherbeei SAG_119_79)
GGAGGCTTTGACGCGGTGGTGCACGCCATAGGAATGCTGTTTGCGTCTTC CACAAACAAGCTCGTGTCCGGTTCGGGATCGGTCCCGTCTCCAGGGGCGA CATATGACCAGGTCACACGTCAGACGGCGGTGGCGGCGGCCGAAGCGCTC GCAGCCTCGGCACGATCAAAGGCGAGTGCTTGAAGGTTGCATTGGCAGCT GCTGGCGCGAGGCTGCCAGTCCAGAAGCGCCCCCTTTTGCCTATTGTACA GCGAGTTTGTTCAACACTTATTGTCAAGGACCTCGGCTTCTCGTAGCTTC AGTCTCTTCGTTTTTGATTTTTTCTGCCGTTACCGTCGCCGACGGCACCA CAGCTTGCCCAGTTGATAGACCACCACAATGTCCCGCCGTTTGCTGCGCC GTGACTGAAAAAAATGCAGGGAAAGTGTCTGCCGATGGTGTTTGTGTCCG CCGCCGAGGCGCGGTGGACGTTCGACGGCGCCTTCGTAGGCACGCCGGTC GAGTGGCTTCATGCATACTTGGTCGCCAAACGCGCCGTGGAGGACAAGGT AAGGCGGCACGAGGCGGGCATCCGTCGAGGCGACAGGGGTTGTTGGTCGG GGTCTGTTCCTCCGGTCGATCATCGCGGCTCGTCTTCTTTCTTCCTCAGA CCGCCTTCTTTCTCAAAATCATATGATTGGTTTGTGTGAGAGAAAGGCGT AACAACCTCACACACCCTCTTCCACAACGGGATCCGGTTATCCTTCCCAG CCGCGGATGTCGCCCACGCTTCTTCAAATTCGATATCCCGACCGGCCCGT TCGTCGTTCTAACTGTAGCCAGTCCCACAGCCTCGTACCAAACATTCTTC CTGCACGCTTCCACGCTTTAAACCACACACGAAACGACATGGAATGCAGT TGTTAAATGACCTAGGTGGCGGCGACCAGCCTTCTCTGCGGCCCATAGTC CTCCGGCCATCCCTCGTGTGGACGCCGTCGCGGCCCTTCGCGCTGCCGCC CGTGGCCGCCTTCACGATCGGCAACTTTCTGGGTTTGCCGTTCGTCGACC GGCCGGTGCGTGTCGACACGCTGGCGGCAGCGGCGATGGCAGCGGTGGGG GACCAGGCGGCGCGCGGCGTGTTTGATTACAGCAGGATGGAGGCGCTGGC GCGGCAGAGGAAGCGATAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6419:118..1286+

>mRNA_P-wetherbeei_contig6419.1.1 ID=mRNA_P-wetherbeei_contig6419.1.1|Name=mRNA_P-wetherbeei_contig6419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig6419:118..1286+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCAGGTCACACGTCAGACGGCGGTGGCGGCGGCCGAAGCGCTCGCA
GCCTCGGCACGATCAAAGGCGATGTCTGCCGATGGTGTTTGTGTCCGCCG
CCGAGGCGCGGTGGACGTTCGACGGCGCCTTCGTAGGCACGCCGGTCGAG
TGGCTTCATGCATACTTGGTCGCCAAACGCGCCGTGGAGGACAAGTTGTT
AAATGACCTAGGTGGCGGCGACCAGCCTTCTCTGCGGCCCATAGTCCTCC
GGCCATCCCTCGTGTGGACGCCGTCGCGGCCCTTCGCGCTGCCGCCCGTG
GCCGCCTTCACGATCGGCAACTTTCTGGGTTTGCCGTTCGTCGACCGGCC
GGTGCGTGTCGACACGCTGGCGGCAGCGGCGATGGCAGCGGTGGGGGACC
AGGCGGCGCGCGGCGTGTTTGATTACAGCAGGATGGAGGCGCTGGCGCGG
CAGAGGAAGCGATAG
back to top