mRNA_P-wetherbeei_contig6418.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6418.2.1
Unique NamemRNA_P-wetherbeei_contig6418.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6418.2.1 vs. uniprot
Match: A0A6H5JNT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT6_9PHAE)

HSP 1 Score: 284 bits (726), Expect = 1.020e-88
Identity = 165/254 (64.96%), Postives = 190/254 (74.80%), Query Frame = 1
Query:   70 VSFGAPSHSPTMRPKSAPNTGRQSWIDKQASNSSIREILKTVTPNYVVTAVIKNRLEEGRLRAQKKKRKTRQMVLAAMDLRELQASQAASFMERLAMARMGFLDKAREVEEYIESERRSMQKQREQKEQAILAQKLAGLDVMHRRRMVGLETELAAELRGSWARAEKERADLRAKHRRQYNMLIEETAQRAYGGVSHCQASGVCCQKPYLCRHNKTASYNTRKPTRDVIRLRQNAERLRATGRIEEAEEFERQV 831
            V+FG P          AP+ G     + +A    ++EILKTVTPNYVVTAVIKNRLEEG+++AQKKKR+TRQ +LA MDLRELQ       MERLAMARMGFLDKAREVE +IESER   QK+RE+KEQAILAQKL GLD+ HRRR +GLE +         A+      +LR KH+R+Y+MLIEETAQRAYGGVS CQ     C+K YLCRHNKTASYNTRKPTR+VIRLRQNAERLRATGR+EEAEEFE Q 
Sbjct:    3 VTFGPPGGGAAGAAPVAPSAGSG---NTKAHPPGVKEILKTVTPNYVVTAVIKNRLEEGKIKAQKKKRRTRQEILAGMDLRELQ-------MERLAMARMGFLDKAREVEVWIESERLKTQKEREEKEQAILAQKLGGLDISHRRRFIGLENKQGEGEAQFRAKXXXXXXELRLKHKREYDMLIEETAQRAYGGVSSCQ-----CEKTYLCRHNKTASYNTRKPTREVIRLRQNAERLRATGRVEEAEEFEIQA 241          
BLAST of mRNA_P-wetherbeei_contig6418.2.1 vs. uniprot
Match: A0A836CAU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU2_9STRA)

HSP 1 Score: 242 bits (617), Expect = 3.280e-73
Identity = 142/214 (66.36%), Postives = 166/214 (77.57%), Query Frame = 1
Query:  211 VTAVIKNRLEEGRLRAQKKKRKTRQMVLAAMDLRELQASQAASFMERLAMARMGFLDKAREVEEYIESERRSMQKQREQKEQAILAQKLAGLD-------VMHRRRMVGLETELAAELRGSWARAEKERADLRAKHRRQYNMLIEETAQRAYGGVSHCQASGVCCQKPYLCRHNKTASYNTRKPTRDVIRLRQNAERLRATGRIEEAEEFERQV 831
            +TAVIKNRL+EG+LRAQ+KKRKTR  +LAAMD+RELQ       MERLAMARMGFLDKA+EVE  IE ER +M K+RE++EQ+IL+QKL+ L        + HRRR+V LE+ L  EL+    +  KE +D + KHRR+Y  LIEETAQRAYGGVS CQ     C+K YLCRHNKTASYNTRKPTRDVI LRQNAERLRATGRIEEAEEF+RQ 
Sbjct:    1 MTAVIKNRLQEGQLRAQRKKRKTRAEILAAMDIRELQ-------MERLAMARMGFLDKAKEVENVIERERVTMLKEREEREQSILSQKLSSLGKYHHAKAMGHRRRLVALESRLTRELQQFLGKCAKELSDTKDKHRREYEALIEETAQRAYGGVSSCQ-----CRKRYLCRHNKTASYNTRKPTRDVISLRQNAERLRATGRIEEAEEFDRQA 202          
BLAST of mRNA_P-wetherbeei_contig6418.2.1 vs. uniprot
Match: D8LM25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM25_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 4.820e-35
Identity = 77/155 (49.68%), Postives = 109/155 (70.32%), Query Frame = 1
Query:  358 MARMGFLDKAREVEEYIESERRSMQKQREQKEQAILAQKLAGLDVMHRRRMVGLETELAAELRGSWARAEKERADLRAKHRRQYNMLIEETAQRAYGGVSHCQASGVCCQKPYLCRHNKTASYNTRKPTRDVIRLRQNAERLRATGRIEEAEEFE 822
            MARMGFLDKA E++  +E+ER  ++K+R+Q++QA+L QK+ GL + H RR   + +   A +     +   E  DL+ K +++Y++L+ ETA RA GGVS C      C  P+ CRHNK+ASYNTRKPT+DVIRLRQN +RLRA+GR+ EA+E +
Sbjct:    1 MARMGFLDKAEELDVMVEAERARLKKERDQQDQAVLDQKMNGLRMSHTRRSAAMTSAHEARIASLLEKCATEIEDLKVKQKKEYDVLVGETATRATGGVSSC-----VCTDPFKCRHNKSASYNTRKPTKDVIRLRQNGQRLRASGRLAEADEVD 150          
BLAST of mRNA_P-wetherbeei_contig6418.2.1 vs. uniprot
Match: A0A835Z9J4_9STRA (SWIM-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9J4_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.790e-27
Identity = 76/184 (41.30%), Postives = 104/184 (56.52%), Query Frame = 1
Query:  388 REVEEYIESERRSMQKQREQKEQAILAQKLAGLDVMHRRRMVGLETELAAELRGSWARAEKERADL------------------------------------------RAKHRRQYNMLIEETAQRAYGGVSHCQASGVCCQKPYLCRHNKTASYNTRKPTRDVIRLRQNAERLRATGRIEEAE 813
            +++++ I++ER+ ++ +RE KE +++  +LAGL++ H+RR+  LE  LA ELR   AR  +E  D                                           RAK +RQY +L+ ETA RA GG+S C      C   Y CRHNK+ASY+TRKPTRDVIRLRQNA+RLRA+GR EEAE
Sbjct:  190 KDIDDRIDAERQRLKAEREGKEASLMVHRLAGLELAHKRRITALEARLAEELRSLAARQAQELDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASALLCSGLLVVTRAKQKRQYELLVGETATRATGGISSCT-----CADAYACRHNKSASYSTRKPTRDVIRLRQNAQRLRASGRQEEAE 368          
BLAST of mRNA_P-wetherbeei_contig6418.2.1 vs. uniprot
Match: D7G884_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G884_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 8.000e-24
Identity = 65/163 (39.88%), Postives = 101/163 (61.96%), Query Frame = 1
Query:  346 ERLAMARMGFLDKAREVEEYIESERRSMQKQREQKEQAILAQKLAGLDVMHRRRMVGLETELAAELRGSWARAEKERADLRAKHRRQYNMLIEETAQRAYGGVSHCQASGVCCQKPYLCRHNKTASYNTRKPTRDVIRLRQNAERLRATGRIEEAEEFERQVS 834
            ERL +AR+GF DKA E++E+IE  R  ++ +RE+ +  IL ++LA L + HR ++  LE EL  + +      E+ERA L  K  +Q+  L+++  +RA G             K YLC HNKTAS+NTR+P ++VI  R+NA+RLR  GR++E+  +E + +
Sbjct:   13 ERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILEEELAALAIQHREKLASLEQELKEDEQKVSRSFERERAVLLRKQEKQFVQLVDDAIKRAIGK-----------SKKYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLDESAAWEEKAA 164          
BLAST of mRNA_P-wetherbeei_contig6418.2.1 vs. uniprot
Match: A0A836CD74_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD74_9STRA)

HSP 1 Score: 100 bits (249), Expect = 4.940e-21
Identity = 63/166 (37.95%), Postives = 96/166 (57.83%), Query Frame = 1
Query:  346 ERLAMARMGFLDKAREVEEYIESERRSMQKQREQKEQAILAQKLAGLDVMHRRRMVGLETELAAE---LRGSWARAEKERADLRAKHRRQYNMLIEETAQRAYGGVSHCQASGVCCQKPYLCRHNKTASYNTRKPTRDVIRLRQNAERLRATGRIEEAEEFERQVS 834
            ERL +AR+GF +KA E++E ++  R  ++ +R  +++ +L  +L  L   H  R   LE  +  E   +RG +    +E+  LR KH  ++  L+    +RA G    C      C K YLC HNKTASYNTR+P +DVI  R+NA RL+  GR+EEA+ +E + +
Sbjct:   86 ERLIVARLGFPEKAMEIDEMVQKIRDDLKTERAAEDERVLMVELERLQEAHAARAEALEQRIGEEEQQMRGKFC---EEQRRLRKKHDSEFLDLVTAATKRAIGRSKSCS-----CTKKYLCTHNKTASYNTRRPKKDVIHYRRNASRLKHGGRLEEAKAWEEKAA 243          
BLAST of mRNA_P-wetherbeei_contig6418.2.1 vs. uniprot
Match: A0A6H5KND4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KND4_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.540e-14
Identity = 55/146 (37.67%), Postives = 75/146 (51.37%), Query Frame = 1
Query:  481 GLDVMHRRRMVGLETELAAELRGSWARAEKERADLRAKHRRQYNML-----------IEETAQRAYGGVSHCQASGVCCQKPYLCRHNKTASYNTRKPTRDVIRLRQNA---------------------ERLRATGRIEEAEEFE 822
            GL + H RR   + +   A +     +   E  DL+ K +++Y++L           + ETA RA GGVS C      C  P+ CRHNK+ASYNTRKPT+DVIRLRQN                      +RLRA+GR+ EA+E +
Sbjct:    3 GLRMSHTRRSAAMTSAQEARIASLLEKCAAEIEDLKDKQKKEYDVLASTNFVHCSMWVGETATRATGGVSSC-----VCTDPFKCRHNKSASYNTRKPTKDVIRLRQNVSRPRHSPAEPPLMWLFFVSRGQRLRASGRLAEADEVD 143          
BLAST of mRNA_P-wetherbeei_contig6418.2.1 vs. uniprot
Match: A0A6C0BWQ3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BWQ3_9ZZZZ)

HSP 1 Score: 75.5 bits (184), Expect = 9.110e-12
Identity = 50/159 (31.45%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  346 ERLAMARMGFLDKAREVEEYIESERRSMQKQREQKEQAILAQKLAGLDVMHRRRMVGLETELAAELRGSWARAEKERADLRAKHRRQYNMLIEETAQRAYGGVSHCQASGVCCQKPYLCRHNKTASYNTRKPTRDVIRLRQNAERLRATGRIEEAEEFE 822
            ERL ++R+GF +KA  +++ IE  R   +  R+ +E+ ++A+ L  L   + R+   L+  +  E                 KHR ++  +IE   +++ G +  C      C+  YLC HNKT+S+N RKP   VI  R+N++RL+  GR E+A + E
Sbjct:   82 ERLIISRLGFAEKAYALDKQIEVMREKAKVVRKAEEEKLMAEMLETLHKKNERKQQRLDAVIKQEHDEXXXXXXXXXXXXIEKHRTEFLKIIENAERKSIGKIKSCN-----CENDYLCHHNKTSSWNIRKPKPIVILYRKNSKRLKQGGRTEDAIQIE 235          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6418.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JNT6_9PHAE1.020e-8864.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CAU2_9STRA3.280e-7366.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LM25_ECTSI4.820e-3549.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z9J4_9STRA4.790e-2741.30SWIM-type domain-containing protein n=1 Tax=Tribon... [more]
D7G884_ECTSI8.000e-2439.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CD74_9STRA4.940e-2137.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KND4_9PHAE3.540e-1437.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6C0BWQ3_9ZZZZ9.110e-1231.45Uncharacterized protein n=1 Tax=viral metagenome T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6418contigP-wetherbeei_contig6418:1946..3397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size834
Hectar predicted targeting categoryother localisation
Exons3
Cds size813
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186912.1873882-UTR-P-wetherbeei_contig6418:1945..19661683186912.1873882-UTR-P-wetherbeei_contig6418:1945..1966Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6418 1946..1966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186912.1978679-CDS-P-wetherbeei_contig6418:1966..22871683186912.1978679-CDS-P-wetherbeei_contig6418:1966..2287Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6418 1967..2287 +
1683186912.207704-CDS-P-wetherbeei_contig6418:2578..29171683186912.207704-CDS-P-wetherbeei_contig6418:2578..2917Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6418 2579..2917 +
1683186912.2190225-CDS-P-wetherbeei_contig6418:3244..33971683186912.2190225-CDS-P-wetherbeei_contig6418:3244..3397Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6418 3245..3397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6418.2.1prot_P-wetherbeei_contig6418.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6418 1967..3397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6418.2.1

>prot_P-wetherbeei_contig6418.2.1 ID=prot_P-wetherbeei_contig6418.2.1|Name=mRNA_P-wetherbeei_contig6418.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=271bp
MSLSFVPQPPGGEHREVSFGAPSHSPTMRPKSAPNTGRQSWIDKQASNSS
IREILKTVTPNYVVTAVIKNRLEEGRLRAQKKKRKTRQMVLAAMDLRELQ
ASQAASFMERLAMARMGFLDKAREVEEYIESERRSMQKQREQKEQAILAQ
KLAGLDVMHRRRMVGLETELAAELRGSWARAEKERADLRAKHRRQYNMLI
EETAQRAYGGVSHCQASGVCCQKPYLCRHNKTASYNTRKPTRDVIRLRQN
AERLRATGRIEEAEEFERQVS
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mRNA from alignment at P-wetherbeei_contig6418:1946..3397+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6418.2.1 ID=mRNA_P-wetherbeei_contig6418.2.1|Name=mRNA_P-wetherbeei_contig6418.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1452bp|location=Sequence derived from alignment at P-wetherbeei_contig6418:1946..3397+ (Phaeothamnion wetherbeei SAG_119_79)
CCCTGCGCCATTGAAGCAGGAATGTCGCTTTCTTTCGTCCCCCAACCTCC CGGTGGGGAGCATCGCGAGGTCTCTTTCGGCGCTCCCTCCCATTCGCCAA CGATGCGACCAAAGTCTGCCCCCAACACGGGACGTCAGAGCTGGATCGAC AAGCAAGCGAGCAACAGCAGCATCCGGGAGATTCTGAAGACCGTAACGCC GAACTATGTCGTGACCGCAGTGATCAAGAATCGCCTTGAGGAAGGACGGC TCCGGGCACAGAAGAAAAAGAGAAAGACGCGGCAGATGGTTCTCGCCGCA ATGGATCTTCGGGAGCTGCAGGCGAGTCAGGCTGCTTCTTTTGTAAAATA ATCTCCTTAATAAATAACTTGGTGACTGAATGCACCTACCATCACGATAA ACCCAGGCCGCCGCTGCTGAGCAAACGCGTTCTCTCAAGACTAAGATCAA GCCCGAAGTTGCGATGAAATTCTGTCGAATGATCCGTTGCTCACGTCAGA ATGACCAAGGCGAAATGATGTAGCAAAATAACGGACCAATGACACATTCG ATCATCACTTCCGTTCCCATCCCATTCATCGTTCCCCCACATCCCTCCTC TCCTTCCTTCCCGCTGGATCCCCGGCGCCACAGATGGAGCGGCTGGCCAT GGCCCGCATGGGCTTTCTCGACAAGGCGCGCGAGGTCGAAGAGTACATCG AGAGCGAGCGCCGCTCCATGCAGAAGCAGCGGGAGCAGAAAGAACAGGCA ATTTTGGCGCAGAAGCTTGCTGGATTGGACGTCATGCACCGGCGCCGGAT GGTAGGGCTCGAGACGGAGCTGGCGGCCGAGCTGCGGGGCTCCTGGGCGC GAGCGGAGAAGGAGCGGGCAGATCTGCGGGCGAAGCACCGGCGGCAGTAC AACATGTTGATCGAGGAGACGGCGCAGCGGGCGTACGGTGGCGTCAGCCA CTGCCAGGCGAGTGGTGTGTGCGTCTTTCCGAGTTTGGCTGCCTCGTCTT TGGTTGTTTGCATTCTTTGGCTGAGAGGTGTGAGCCATCTGTTTTCACTG CCGGAGGCCGGCCGGCCAGCAGGCAGCTGCAGGTGATTGCTTTCCTGTAA ACCGGCAGAGAGTAATTTCTGCGTTGGCGCTGCTTGCTCTCTTTCAGGAT CTGTGTCTTCTGTGGCCGGGACCTGATCGTGGTCATAGCGAGATGGTCCA TCTCCTTCGCTTTGCTCCACCCTGCTCTATCGTTCGTTATATAAAGCGCT CTTTGACTGCGTGGAAACCTAACCTGCTTCCCGTCTCCGCCGTACACAGT GTCAAAAACCGTACCTGTGTCGCCACAACAAGACGGCGTCCTACAACACC CGAAAGCCGACGCGCGACGTCATCCGCCTGCGGCAGAACGCCGAGCGGCT GCGTGCGACAGGCCGTATCGAGGAGGCTGAGGAATTCGAGCGGCAGGTAT CT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6418:1946..3397+

>mRNA_P-wetherbeei_contig6418.2.1 ID=mRNA_P-wetherbeei_contig6418.2.1|Name=mRNA_P-wetherbeei_contig6418.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=813bp|location=Sequence derived from alignment at P-wetherbeei_contig6418:1946..3397+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCTTTCTTTCGTCCCCCAACCTCCCGGTGGGGAGCATCGCGAGGT
CTCTTTCGGCGCTCCCTCCCATTCGCCAACGATGCGACCAAAGTCTGCCC
CCAACACGGGACGTCAGAGCTGGATCGACAAGCAAGCGAGCAACAGCAGC
ATCCGGGAGATTCTGAAGACCGTAACGCCGAACTATGTCGTGACCGCAGT
GATCAAGAATCGCCTTGAGGAAGGACGGCTCCGGGCACAGAAGAAAAAGA
GAAAGACGCGGCAGATGGTTCTCGCCGCAATGGATCTTCGGGAGCTGCAG
GCGAGTCAGGCTGCTTCTTTTATGGAGCGGCTGGCCATGGCCCGCATGGG
CTTTCTCGACAAGGCGCGCGAGGTCGAAGAGTACATCGAGAGCGAGCGCC
GCTCCATGCAGAAGCAGCGGGAGCAGAAAGAACAGGCAATTTTGGCGCAG
AAGCTTGCTGGATTGGACGTCATGCACCGGCGCCGGATGGTAGGGCTCGA
GACGGAGCTGGCGGCCGAGCTGCGGGGCTCCTGGGCGCGAGCGGAGAAGG
AGCGGGCAGATCTGCGGGCGAAGCACCGGCGGCAGTACAACATGTTGATC
GAGGAGACGGCGCAGCGGGCGTACGGTGGCGTCAGCCACTGCCAGGCGAG
TGGTGTGTGCTGTCAAAAACCGTACCTGTGTCGCCACAACAAGACGGCGT
CCTACAACACCCGAAAGCCGACGCGCGACGTCATCCGCCTGCGGCAGAAC
GCCGAGCGGCTGCGTGCGACAGGCCGTATCGAGGAGGCTGAGGAATTCGA
GCGGCAGGTATCT
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