mRNA_P-wetherbeei_contig6402.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6402.1.1
Unique NamemRNA_P-wetherbeei_contig6402.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6402.1.1 vs. uniprot
Match: D7G8U9_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U9_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 4.550e-13
Identity = 40/76 (52.63%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:    1 LTRAARILAEEQRSAKAVRSFLLNFLEERDGSIKRRINLKRHELETGRAATDATVQEICRVQPAIIGLVLRDCAAV 228
            L+++A++L E+++   ++RSFLLNFLE RD SIK+R++L  H+ ETGR  TDA VQE+C+++P +IGL LR+C  V
Sbjct:  142 LSKSAKLLEEDRKKVASIRSFLLNFLEGRDCSIKKRLDLYVHQTETGRPVTDAVVQEVCKLRPEMIGLSLRNCIEV 217
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BLAST of mRNA_P-wetherbeei_contig6402.1.1 vs. uniprot
Match: A0A836CGM1_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGM1_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.880e-11
Identity = 40/73 (54.79%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:   10 AARILAEEQRSAKAVRSFLLNFLEERDGSIKRRINLKRHELETGRAATDATVQEICRVQPAIIGLVLRDCAAV 228
            A++  + +QR+ + VRSF+LNFLE+RDGSIK+R++L  H++E+GRA TDA VQE+ R  P + GL LR CAA+
Sbjct:   83 ASKAESADQRN-RTVRSFMLNFLEDRDGSIKKRLDLGLHQVESGRAVTDAVVQEVARACPQLRGLALRGCAAL 154
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BLAST of mRNA_P-wetherbeei_contig6402.1.1 vs. uniprot
Match: A0A7S1XL41_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XL41_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.350e-7
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   28 EEQRSAKAVRSFLLNFLEERDGSIKRRINLKRHELETGRAATDATVQEICRVQPAIIGLVLRDCAAV 228
            +  R+ K +RSFLLNFL E DGS++  I+L  H  ETG+  T+A VQEIC+++P +  L LRDC  V
Sbjct:  145 DSPRARKTLRSFLLNFLTEEDGSVRDDIDLDLHSRETGQPITNAIVQEICKMKPDMKKLNLRDCQLV 211
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BLAST of mRNA_P-wetherbeei_contig6402.1.1 vs. uniprot
Match: A0A024USX1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024USX1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 9.880e-5
Identity = 27/66 (40.91%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:   22 LAEEQRSAKAVRSFLLNFLEERDGSIKRRINLKRHELETGRAATDATVQEICRVQPAIIGLVLRDC 219
            ++ + +S + +RSFLLNFL +  G+ +  INL +H +++G A TDATVQE+  + P +  L L +C
Sbjct:  101 ISNDMKSPRRMRSFLLNFLADDVGTFRTEINLYQHAVDSGLAVTDATVQEVAHLVPGLTSLELSNC 166
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6402.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G8U9_ECTSI4.550e-1352.63Hypothetical leucine rich repeat calmodulin bindin... [more]
A0A836CGM1_9STRA3.880e-1154.79WW domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S1XL41_9STRA2.350e-750.75Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A024USX1_9STRA9.880e-540.91Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6402contigP-wetherbeei_contig6402:2019..3457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G8U9
PFAMsIQ,LRR_6
Model size1439
Max annot lvl2759|Eukaryota
KEGG koko:K10268
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.47e-14
EggNOG OGsKOG1947@1|root,KOG1947@2759|Eukaryota
DescriptionF-box LRR-repeat protein
Cds size1437
COG categoryB
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186910.6442654-CDS-P-wetherbeei_contig6402:2018..34551683186910.6442654-CDS-P-wetherbeei_contig6402:2018..3455Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6402 2019..3455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6402.1.1prot_P-wetherbeei_contig6402.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6402 2019..3455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6402.1.1

>prot_P-wetherbeei_contig6402.1.1 ID=prot_P-wetherbeei_contig6402.1.1|Name=mRNA_P-wetherbeei_contig6402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=479bp
LTRAARILAEEQRSAKAVRSFLLNFLEERDGSIKRRINLKRHELETGRAA
TDATVQEICRVQPAIIGLVLRDCAAVTDVGLWCIARHAPGIRELDLGGCG
GISHVGLRSLALRCSSLEHLDFSRCPALCDRSLRVLSGACWRLRILILRG
CAGVSDTGVAELARQSPELRHLDVSGCPRIGDYGDRALMQLGSTCPDLRR
LDAIGCRHVSDAGVSAVAAGCRRLEALLLTGCGDVTGAGACALGAHCPLL
RELGLAGCRRVGDADVRRLVDGCPRLRVLDLSGCDRLTAAGLAHLAAGLR
ELQELNVSGCAGVDDEGLAALVGVRAWRVGAARCVRVTESGIARLAEDCP
TLSSLDVTGCPLIRRRFLAQLCLQMRFAELADGYFGFQAKPDAAELRRHA
AEEERQAAAADRIQGAVRQRLARTRLWLARREWILKNRLVRMQAVARGFL
ARRRYVALRRRERARRAAIRLQALWRGTR
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mRNA from alignment at P-wetherbeei_contig6402:2019..3457+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6402.1.1 ID=mRNA_P-wetherbeei_contig6402.1.1|Name=mRNA_P-wetherbeei_contig6402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1439bp|location=Sequence derived from alignment at P-wetherbeei_contig6402:2019..3457+ (Phaeothamnion wetherbeei SAG_119_79)
CTCACTCGTGCAGCTAGGATCCTCGCCGAAGAGCAGCGATCCGCTAAAGC
GGTGCGATCCTTTCTGCTCAACTTTCTCGAGGAGCGCGACGGGTCCATCA
AGCGCCGCATCAACCTCAAGCGGCACGAGCTCGAGACCGGCCGCGCCGCC
ACCGATGCCACGGTACAGGAGATCTGCCGCGTTCAGCCGGCCATCATCGG
ACTCGTGCTGCGAGATTGTGCCGCCGTGACGGACGTTGGCCTCTGGTGCA
TCGCGCGGCACGCGCCCGGCATCCGCGAGCTCGACCTCGGTGGCTGCGGC
GGCATTTCCCACGTGGGCCTGCGCTCCCTGGCGCTCCGCTGCAGCAGCCT
CGAGCACCTCGACTTCTCCCGCTGCCCGGCCCTCTGCGACCGCAGCCTCC
GCGTCCTCTCAGGCGCATGCTGGCGGCTGCGCATCTTGATTCTGCGCGGC
TGCGCCGGCGTATCGGACACAGGCGTCGCCGAGCTGGCCCGCCAGAGCCC
GGAGCTCCGCCACCTGGACGTCAGTGGGTGCCCGCGCATCGGCGACTACG
GCGACCGCGCCCTCATGCAACTCGGCAGCACCTGCCCTGACCTGCGCCGG
CTCGACGCTATCGGCTGCCGCCACGTCTCGGATGCCGGTGTCTCCGCCGT
CGCGGCGGGTTGCCGTCGCCTCGAGGCGCTGCTGCTGACAGGCTGCGGCG
ACGTGACAGGCGCAGGCGCCTGCGCACTCGGCGCCCACTGCCCGCTGCTG
CGCGAGCTTGGCCTCGCCGGCTGCCGCCGCGTCGGCGACGCCGACGTCCG
CCGGCTCGTCGACGGCTGCCCGCGCCTGCGGGTCCTGGACCTGTCCGGCT
GTGACCGGCTGACGGCCGCCGGCCTGGCGCACCTTGCCGCCGGCCTTCGC
GAGCTGCAGGAGCTCAACGTCAGCGGCTGCGCCGGCGTCGACGACGAAGG
ATTGGCGGCGCTCGTCGGCGTGCGGGCGTGGCGCGTCGGCGCCGCCCGCT
GCGTCCGGGTCACCGAGTCGGGCATCGCCCGCCTGGCTGAGGACTGCCCG
ACGCTGTCGAGCCTCGACGTGACGGGCTGTCCGCTCATCCGCCGGCGCTT
CCTCGCGCAGCTCTGCCTACAGATGCGCTTCGCGGAGCTGGCCGACGGCT
ACTTCGGCTTCCAGGCCAAGCCGGATGCGGCCGAGCTGCGCCGCCACGCC
GCCGAGGAGGAACGGCAGGCCGCCGCCGCCGACCGCATCCAGGGCGCCGT
CCGGCAGCGGCTCGCGCGCACCCGCCTGTGGCTCGCACGCCGCGAGTGGA
TTCTGAAGAACCGCCTCGTGCGCATGCAGGCGGTCGCCCGCGGCTTCTTG
GCGCGGCGGCGCTACGTCGCTCTGCGGAGGCGGGAGCGCGCCCGCCGCGC
CGCCATCCGCCTGCAGGCGCTCTGGCGGGGCACGCGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6402:2019..3457+

>mRNA_P-wetherbeei_contig6402.1.1 ID=mRNA_P-wetherbeei_contig6402.1.1|Name=mRNA_P-wetherbeei_contig6402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1437bp|location=Sequence derived from alignment at P-wetherbeei_contig6402:2019..3457+ (Phaeothamnion wetherbeei SAG_119_79)
CTCACTCGTGCAGCTAGGATCCTCGCCGAAGAGCAGCGATCCGCTAAAGC
GGTGCGATCCTTTCTGCTCAACTTTCTCGAGGAGCGCGACGGGTCCATCA
AGCGCCGCATCAACCTCAAGCGGCACGAGCTCGAGACCGGCCGCGCCGCC
ACCGATGCCACGGTACAGGAGATCTGCCGCGTTCAGCCGGCCATCATCGG
ACTCGTGCTGCGAGATTGTGCCGCCGTGACGGACGTTGGCCTCTGGTGCA
TCGCGCGGCACGCGCCCGGCATCCGCGAGCTCGACCTCGGTGGCTGCGGC
GGCATTTCCCACGTGGGCCTGCGCTCCCTGGCGCTCCGCTGCAGCAGCCT
CGAGCACCTCGACTTCTCCCGCTGCCCGGCCCTCTGCGACCGCAGCCTCC
GCGTCCTCTCAGGCGCATGCTGGCGGCTGCGCATCTTGATTCTGCGCGGC
TGCGCCGGCGTATCGGACACAGGCGTCGCCGAGCTGGCCCGCCAGAGCCC
GGAGCTCCGCCACCTGGACGTCAGTGGGTGCCCGCGCATCGGCGACTACG
GCGACCGCGCCCTCATGCAACTCGGCAGCACCTGCCCTGACCTGCGCCGG
CTCGACGCTATCGGCTGCCGCCACGTCTCGGATGCCGGTGTCTCCGCCGT
CGCGGCGGGTTGCCGTCGCCTCGAGGCGCTGCTGCTGACAGGCTGCGGCG
ACGTGACAGGCGCAGGCGCCTGCGCACTCGGCGCCCACTGCCCGCTGCTG
CGCGAGCTTGGCCTCGCCGGCTGCCGCCGCGTCGGCGACGCCGACGTCCG
CCGGCTCGTCGACGGCTGCCCGCGCCTGCGGGTCCTGGACCTGTCCGGCT
GTGACCGGCTGACGGCCGCCGGCCTGGCGCACCTTGCCGCCGGCCTTCGC
GAGCTGCAGGAGCTCAACGTCAGCGGCTGCGCCGGCGTCGACGACGAAGG
ATTGGCGGCGCTCGTCGGCGTGCGGGCGTGGCGCGTCGGCGCCGCCCGCT
GCGTCCGGGTCACCGAGTCGGGCATCGCCCGCCTGGCTGAGGACTGCCCG
ACGCTGTCGAGCCTCGACGTGACGGGCTGTCCGCTCATCCGCCGGCGCTT
CCTCGCGCAGCTCTGCCTACAGATGCGCTTCGCGGAGCTGGCCGACGGCT
ACTTCGGCTTCCAGGCCAAGCCGGATGCGGCCGAGCTGCGCCGCCACGCC
GCCGAGGAGGAACGGCAGGCCGCCGCCGCCGACCGCATCCAGGGCGCCGT
CCGGCAGCGGCTCGCGCGCACCCGCCTGTGGCTCGCACGCCGCGAGTGGA
TTCTGAAGAACCGCCTCGTGCGCATGCAGGCGGTCGCCCGCGGCTTCTTG
GCGCGGCGGCGCTACGTCGCTCTGCGGAGGCGGGAGCGCGCCCGCCGCGC
CGCCATCCGCCTGCAGGCGCTCTGGCGGGGCACGCGG
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