mRNA_P-wetherbeei_contig6399.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6399.1.1
Unique NamemRNA_P-wetherbeei_contig6399.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6399.1.1 vs. uniprot
Match: A0A6H5JHB7_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHB7_9PHAE)

HSP 1 Score: 326 bits (836), Expect = 2.950e-106
Identity = 175/275 (63.64%), Postives = 216/275 (78.55%), Query Frame = 1
Query:    1 MSRGVFQPITQVRLTNVAIVRLSRAGKRFEIACYRNKVVNWRNKLETDIDEVLQINSIFQNVSKGVLAKKKDILDAFGTVDETEVCKASNIVILEKGEMQVSDKERQAAMDSTFRDIATIVSEKCVDPTSNRPYTVGMIQNAMRDIHYATVATRSAKQQALDVIRQLAAVMPIARACMRLRVVADAEGGPALRAALEALGVDCGSGAGAVERRTVAEWTLDVLVDPGLFRKVEELVREQTGGQGQVQVLQLAVQEEGEADMDTELARKELLALQL 825
            MSR + QP+ QVRLTNVA+VRL++ GKRFEIACYRNKVVNWRN++ETD+DEVLQI S+F+NVSKGVLAK KD++ AFGT ++ E C+    +IL+KGEMQVSDKERQ A++S FRD+ATIVSEKCV+P SNRPYTV MI+ AMRD+H++   TRSAKQQAL+VI++L  VMPI RA M+LR+  D +  P L+ AL  LGVD     G     +  E  LD LVDPGL+R VEE VR   GG+  ++VLQL+VQ+EGEADMD EL RKELLA++L
Sbjct:    1 MSRAITQPVNQVRLTNVAVVRLNKTGKRFEIACYRNKVVNWRNRVETDLDEVLQIESVFENVSKGVLAKNKDLMKAFGTDNQLEACR----IILDKGEMQVSDKERQVALESVFRDVATIVSEKCVNPASNRPYTVSMIEKAMRDVHFSAHPTRSAKQQALEVIKKLKEVMPIDRAKMKLRISTDEDSTP-LKEALGELGVDSFENGGGAAAGSSGE-VLDFLVDPGLYRDVEEAVRTAAGGRCALEVLQLSVQQEGEADMDVELMRKELLAVKL 269          
BLAST of mRNA_P-wetherbeei_contig6399.1.1 vs. uniprot
Match: A0A835Z759_9STRA (SBDS protein C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z759_9STRA)

HSP 1 Score: 318 bits (815), Expect = 8.560e-104
Identity = 174/275 (63.27%), Postives = 215/275 (78.18%), Query Frame = 1
Query:    1 MSRGVFQPITQVRLTNVAIVRLSRAGKRFEIACYRNKVVNWRNKLETDIDEVLQINSIFQNVSKGVLAKKKDILDAFGTVDETEVCKASNIVILEKGEMQVSDKERQAAMDSTFRDIATIVSEKCVDPTSNRPYTVGMIQNAMRDIHYATVATRSAKQQALDVIRQLAAVMPIARACMRLRVVADAEGGPALRAALEALGVDCGSGAGAVERRTVAEWTLDVLVDPGLFRKVEELVREQTGGQGQVQVLQLAVQEEGEADMDTELARKELLALQL 825
            MSR VFQP+ QVRLTNVA+VR++R GKRFEIACYRNKVVNWRN++ETD++EVLQI ++FQNVSKGVLA KKD+  AFGT DE E+ +     IL+KGE+QVSDKER+A  +S FRD+ATIVSEKCV+P SNRPYTV MI+NAMRD+H+A    +SAK QAL++I +L  VMPIARA M LRV A A    ++ A+L ALGV         + RT AE ++DVLVDPGLFR +EE +R   GG  +V+VLQL+VQ+EGEAD+D E ARK +LALQ+
Sbjct:    1 MSRAVFQPVGQVRLTNVAVVRVTRTGKRFEIACYRNKVVNWRNRVETDLNEVLQITTVFQNVSKGVLANKKDMAKAFGTEDEDEIIR----YILDKGEVQVSDKERRAQYESAFRDVATIVSEKCVNPHSNRPYTVSMIENAMRDVHFAVAPNKSAKAQALELIPRLKEVMPIARASMLLRVTAPAALAQSVEASLSALGVTHFE----KQTRTEAEHSVDVLVDPGLFRGIEEALRGSGGGAARVEVLQLSVQQEGEADIDLEAARKGVLALQV 267          
BLAST of mRNA_P-wetherbeei_contig6399.1.1 vs. uniprot
Match: UPI001B88E1FB (LOW QUALITY PROTEIN: ribosome maturation protein SBDS-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88E1FB)

HSP 1 Score: 261 bits (667), Expect = 4.660e-84
Identity = 138/262 (52.67%), Postives = 193/262 (73.66%), Query Frame = 1
Query:   10 GVFQPITQVRLTNVAIVRLSRAGKRFEIACYRNKVVNWRNKLETDIDEVLQINSIFQNVSKGVLAKKKDILDAFGTVDETEVCKASNIVILEKGEMQVSDKERQAAMDSTFRDIATIVSEKCVDPTSNRPYTVGMIQNAMRDIHYATVATRSAKQQALDVIRQLAAVMPIARACMRLRVVADAEGGPALRAALEALGVDCGSGAGAVERRTVAEWTLDV----LVDPGLFRKVEELVREQTGGQGQVQVLQLAVQEEGEADM 783
             +F P  Q+RLTNVAIVR+ + GKRFEIACY+NKVV+WRNK+E DIDEVLQ +++F NVSKG ++K+ D++ AFGT D++E+CK     IL KGE+QVS++ERQA ++STFRDIATIV++KCV+P + RPYTVG+I+ AM+D+HYA   TR+AKQQALDVIR L   MP+ RA MR+R+V   +    +R  +++L  +       +E+    +WT ++    L+DPG +R+++ELVR +T GQG V+VL L   EEG+  +
Sbjct:    2 SIFTPTNQIRLTNVAIVRMKKGGKRFEIACYKNKVVSWRNKIEKDIDEVLQTHTVFTNVSKGQVSKRDDLVAAFGTDDQSEICKQ----ILSKGELQVSERERQAQLESTFRDIATIVADKCVNPETKRPYTVGLIERAMKDVHYAVKPTRNAKQQALDVIRLLKTHMPLERARMRMRLVLPVKEARRIREKIKSLLAN-------IEQE---DWTPNMEIICLIDPGAYREIDELVRSETKGQGTVEVLNLKDIEEGDESL 249          
BLAST of mRNA_P-wetherbeei_contig6399.1.1 vs. uniprot
Match: A0A0C9Q0K3_9HYME (Ribosome maturation protein SBDS n=2 Tax=Opiinae TaxID=68883 RepID=A0A0C9Q0K3_9HYME)

HSP 1 Score: 258 bits (660), Expect = 5.910e-83
Identity = 140/256 (54.69%), Postives = 186/256 (72.66%), Query Frame = 1
Query:   13 VFQPITQVRLTNVAIVRLSRAGKRFEIACYRNKVVNWRNKLETDIDEVLQINSIFQNVSKGVLAKKKDILDAFGTVDETEVCKASNIVILEKGEMQVSDKERQAAMDSTFRDIATIVSEKCVDPTSNRPYTVGMIQNAMRDIHYATVATRSAKQQALDVIRQLAAVMPIARACMRLRVVADAEGGPALRAALEALGVDCGSGAGAVERRTVAEWTLDV--LVDPGLFRKVEELVREQTGGQGQVQVLQLAVQEEGE 774
            +F PI Q+RLTNVA+VR+ + GKRFEIACYRNKVV+WRNKLE DIDEVLQ +++F NVSKG ++KK+D+L AFGT ++TE+CK     IL KGE+QVSDKER +A+DS F+DIAT V++KCV+P S RPY V MI+ AM+D+H++    R+AKQQAL+VI QL +VMP+ RA MRLRVV   +    LR  +  +          VE    AE TLD+  L+DPG +RK++EL+R +T G G ++++ L    EGE
Sbjct:    4 LFTPINQIRLTNVAVVRMKKQGKRFEIACYRNKVVSWRNKLEKDIDEVLQTHTVFTNVSKGQMSKKEDLLKAFGTDNQTEICKE----ILSKGELQVSDKERHSALDSMFKDIATTVADKCVNPDSKRPYPVSMIEKAMKDVHFSVKPHRNAKQQALEVIPQLKSVMPLERAQMRLRVVISGKEARKLRDKIVKMTTS-------VESENWAEGTLDLTCLIDPGNYRKIDELIRSETRGTGILELVNLKEVTEGE 248          
BLAST of mRNA_P-wetherbeei_contig6399.1.1 vs. uniprot
Match: A0A7M7R6S1_APIME (Ribosome maturation protein SBDS n=21 Tax=Apoidea TaxID=34735 RepID=A0A7M7R6S1_APIME)

HSP 1 Score: 258 bits (658), Expect = 1.310e-82
Identity = 139/259 (53.67%), Postives = 186/259 (71.81%), Query Frame = 1
Query:   13 VFQPITQVRLTNVAIVRLSRAGKRFEIACYRNKVVNWRNKLETDIDEVLQINSIFQNVSKGVLAKKKDILDAFGTVDETEVCKASNIVILEKGEMQVSDKERQAAMDSTFRDIATIVSEKCVDPTSNRPYTVGMIQNAMRDIHYATVATRSAKQQALDVIRQLAAVMPIARACMRLRVVADAEGGPALRAALEALGVDCGSGAGAVERRTVAEW---TLDV--LVDPGLFRKVEELVREQTGGQGQVQVLQLAVQEEGE 774
            +F P  Q+RLTNVA+VR+ +AGKRFEIACYRNKV++WRNKLE DIDEVLQ +++F NVSKG +AKK+D++ AFGT ++TE+CK     IL KGE+QVSDKER +A+DS F+DIAT V+ KC++P + RPYT+ MI+ AM+D+H++    R+AKQQALDVI QL AVMP+ RA MRLRV+   +    LR  +E L          V +    EW   TLD+  L+DPG +R++ ELVR +T G G +++L L    EG+
Sbjct:    7 IFTPTNQIRLTNVAVVRMKKAGKRFEIACYRNKVISWRNKLEKDIDEVLQTHTVFINVSKGQVAKKEDLIKAFGTDNQTEICKE----ILTKGELQVSDKERHSALDSMFKDIATTVANKCINPETKRPYTITMIEKAMKDVHFSVKPNRNAKQQALDVIPQLKAVMPLERAQMRLRVLVSGKEAKKLRDKIEKL----------VTKLETEEWDNGTLDLVCLIDPGHYREINELVRSETKGSGLLELLNLKEIVEGD 251          
BLAST of mRNA_P-wetherbeei_contig6399.1.1 vs. uniprot
Match: A0A7M7G5I7_NASVI (Ribosome maturation protein SBDS n=1 Tax=Nasonia vitripennis TaxID=7425 RepID=A0A7M7G5I7_NASVI)

HSP 1 Score: 257 bits (656), Expect = 2.380e-82
Identity = 138/256 (53.91%), Postives = 185/256 (72.27%), Query Frame = 1
Query:   13 VFQPITQVRLTNVAIVRLSRAGKRFEIACYRNKVVNWRNKLETDIDEVLQINSIFQNVSKGVLAKKKDILDAFGTVDETEVCKASNIVILEKGEMQVSDKERQAAMDSTFRDIATIVSEKCVDPTSNRPYTVGMIQNAMRDIHYATVATRSAKQQALDVIRQLAAVMPIARACMRLRVVADAEGGPALRAALEALGVDCGSGAGAVERRTVAEWTLDV--LVDPGLFRKVEELVREQTGGQGQVQVLQLAVQEEGE 774
            +F P+ Q+RLTNVA+VR+ +AGKRFEIACYRNKV++WRNKLE DIDEVLQ +++F NVSKG +AKK+D++ AFG  D+TE+CK     ILEKGE+QVSDKER +A+DS F+DIAT V++KCV+P S RPY+V +I+ AM+DIH++    R+AKQQAL+VI QL  VMP+ RA MRLRV+   +    LR  +  L          VE       +LD+  L+DPG +R+++ELVR +T G G +++L L    EGE
Sbjct:    4 IFTPVNQIRLTNVAVVRMKKAGKRFEIACYRNKVISWRNKLEKDIDEVLQTHTVFMNVSKGQVAKKEDLIKAFGKDDQTEICKE----ILEKGELQVSDKERHSALDSMFKDIATTVADKCVNPESKRPYSVSLIEKAMKDIHFSVKPNRNAKQQALEVITQLKTVMPLERAQMRLRVLVSGKEARKLREKIVKLTTK-------VESEDWNSGSLDLVCLIDPGHYREIDELVRAETKGSGVLELLNLKEITEGE 248          
BLAST of mRNA_P-wetherbeei_contig6399.1.1 vs. uniprot
Match: UPI000771B1AA (ribosome maturation protein SBDS n=1 Tax=Cephus cinctus TaxID=211228 RepID=UPI000771B1AA)

HSP 1 Score: 254 bits (649), Expect = 2.740e-81
Identity = 138/254 (54.33%), Postives = 180/254 (70.87%), Query Frame = 1
Query:   13 VFQPITQVRLTNVAIVRLSRAGKRFEIACYRNKVVNWRNKLETDIDEVLQINSIFQNVSKGVLAKKKDILDAFGTVDETEVCKASNIVILEKGEMQVSDKERQAAMDSTFRDIATIVSEKCVDPTSNRPYTVGMIQNAMRDIHYATVATRSAKQQALDVIRQLAAVMPIARACMRLRVVADAEGGPALRAALEALGVDCGSGAGAVERRTVAEWTLDVLVDPGLFRKVEELVREQTGGQGQVQVLQLAVQEEGE 774
            +F PI Q+RLTNVA+VR+ + GKRFEIACYRNKVV+WRNKLE DI+EVLQ +++F NVSKG +AKK+D++ AFG  D+TE+CK     ILEKGE+QVSDKER +A+DS  +DIAT V+EKCV+P + RPY V MI+ AM+DIH++    R+AKQQALDVI+QL  VMP+ RA MRLRV+   +    LR  +  L     S     E        L  L+DPG +R+++ELVR +T G G +++L L    EGE
Sbjct:    4 IFTPINQIRLTNVAVVRMKKGGKRFEIACYRNKVVSWRNKLEKDINEVLQTHTVFTNVSKGQVAKKEDLIKAFGKEDQTEICKD----ILEKGELQVSDKERHSALDSMLKDIATTVAEKCVNPETKRPYPVSMIEKAMKDIHFSVKPNRNAKQQALDVIQQLKTVMPLERAQMRLRVLITGKEARKLREKIMKLAAKVES-----EDWDSGSLNLICLIDPGQYREIDELVRSETKGHGILELLNLKEVTEGE 248          
BLAST of mRNA_P-wetherbeei_contig6399.1.1 vs. uniprot
Match: A0A4D9CZ78_9STRA (C2H2-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZ78_9STRA)

HSP 1 Score: 259 bits (661), Expect = 1.810e-80
Identity = 150/269 (55.76%), Postives = 194/269 (72.12%), Query Frame = 1
Query:    1 MSRGVFQPITQVRLTNVAIVRLSRAGKRFEIACYRNKVVNWRNKLETDIDEVLQINSIFQNVSKGVLAKKKDILDAFGTVDETEVCKASNIVILEKGEMQVSDKERQAAMDSTFRDIATIVSEKCVDPTSNRPYTVGMIQNAMRDIHYATVATRSAKQQALDVIRQLAAVMPIARACMRLRVVADA-EGGPALRAALEALGVDCGSGAGAVERRTVAEWTLDVLVDPGLFRKVEELVREQTGGQGQVQVLQLAVQEEGEADMDTELARK 804
            MSR + QP+ QVRLTNVA+VR+ + GKRFEIACYRNKV++WR  +E DIDEVLQ ++IF NVSKGVLA  KD++D FG  D   + +    +ILEKGE   SDKER+A  +S +RDIATIV+ K V+PTSNRPYTV MI + M+DIH+A   TR AKQQAL+VIR+L  VMP+ RA MRL+VV    E    +   + + G+D     G     T  +  +D+LVDPGLFR+V+ELVR +  G+G + VL+L+VQ+EGEAD+D E+ARK
Sbjct:    1 MSRRIGQPVNQVRLTNVAMVRVHKGGKRFEIACYRNKVLSWRQGVEKDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDDVEALLR----LILEKGEYHPSDKEREAMHESLYRDIATIVAIKSVNPTSNRPYTVNMILSGMKDIHFAVNPTRGAKQQALEVIRRLQDVMPLERAKMRLKVVCPTTEDLAQVVEGMASFGID-----GNTVEATGKKEEVDLLVDPGLFRRVDELVRGK--GKGALHVLELSVQQEGEADVDLEIARK 258          
BLAST of mRNA_P-wetherbeei_contig6399.1.1 vs. uniprot
Match: A0A1X7V953_AMPQE (Ribosome maturation protein SBDS n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V953_AMPQE)

HSP 1 Score: 251 bits (642), Expect = 2.940e-80
Identity = 137/259 (52.90%), Postives = 186/259 (71.81%), Query Frame = 1
Query:   10 GVFQPITQVRLTNVAIVRLSRAGKRFEIACYRNKVVNWRNKLETDIDEVLQINSIFQNVSKGVLAKKKDILDAFGTVDETEVCKASNIVILEKGEMQVSDKERQAAMDSTFRDIATIVSEKCVDPTSNRPYTVGMIQNAMRDIHYATVATRSAKQQALDVIRQLAAVMPIARACMRLRVVADAEGGPALRAALEALGVDCGSGAGAVERRTVAEWT--LDV--LVDPGLFRKVEELVREQTGGQGQVQVLQLAVQEEGE 774
             +F P  Q+RLTNVAIVR+ + GKRFEIACY+NKVV+WRNK+E DIDEVLQ +++F NVSKG +AK+ D+  AFGT D+TE+CK     IL KGE+Q+S++ERQ+ ++S FRDI+TIV++KCV+P + RPYTVGMI+ AM+D+HYA   TRSAKQQ+LDVIR L   MP+ RA MRL++V   +    +R  +  L         +VE+    +W   L++  L+DPG FR+++E+VR  T G G V+VL L   EEG+
Sbjct:    2 SIFTPTNQIRLTNVAIVRIKKGGKRFEIACYKNKVVSWRNKVEKDIDEVLQTHTVFNNVSKGQVAKRDDLASAFGTEDQTEICKT----ILSKGELQISERERQSQLESLFRDISTIVADKCVNPDTKRPYTVGMIERAMKDVHYAVKPTRSAKQQSLDVIRLLKDHMPLERARMRLKLVLPVKEARKVREKIVGL-------LASVEQE---DWRPQLEIVCLIDPGRFREIDEIVRGDTKGSGIVEVLNLKDVEEGD 246          
BLAST of mRNA_P-wetherbeei_contig6399.1.1 vs. uniprot
Match: A0A834JRM0_VESGE (Ribosome maturation protein SBDS n=4 Tax=Vespinae TaxID=7439 RepID=A0A834JRM0_VESGE)

HSP 1 Score: 251 bits (642), Expect = 3.140e-80
Identity = 138/256 (53.91%), Postives = 180/256 (70.31%), Query Frame = 1
Query:   13 VFQPITQVRLTNVAIVRLSRAGKRFEIACYRNKVVNWRNKLETDIDEVLQINSIFQNVSKGVLAKKKDILDAFGTVDETEVCKASNIVILEKGEMQVSDKERQAAMDSTFRDIATIVSEKCVDPTSNRPYTVGMIQNAMRDIHYATVATRSAKQQALDVIRQLAAVMPIARACMRLRVVADAEGGPALRAALEALGVDCGSGAGAVERRTVAEWTLDV--LVDPGLFRKVEELVREQTGGQGQVQVLQLAVQEEGE 774
            +F P  Q+RLTNVAIVR+ + GKRFEIACY+NKVV+WRNKLE DIDEVLQ +++F NVSKG +AKK+D++ +FGT D+TE+CK     IL KGE+QVSDKER  A+DS F+DIAT V++KCV+P S RPY V MI+ AM+D+H++    R+AKQQALDVI QL AVMP+ RA MRL+V    +    LR  +  L          VE       TLD+  L+DPG FR+++ELVR +T   G +++L L    EG+
Sbjct:    4 IFTPTNQIRLTNVAIVRMKKTGKRFEIACYKNKVVSWRNKLEKDIDEVLQTHTVFTNVSKGQVAKKEDLIKSFGTDDQTEICKE----ILAKGELQVSDKERHLALDSMFKDIATTVADKCVNPESKRPYPVSMIEKAMKDVHFSVKPNRNAKQQALDVIPQLKAVMPLERAQMRLKVTISGKEARKLREKIIKLATK-------VESENWDNGTLDLICLIDPGQFREIDELVRSETKRTGLLELLNLKEIAEGD 248          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6399.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHB7_9PHAE2.950e-10663.64C2H2-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835Z759_9STRA8.560e-10463.27SBDS protein C-terminal domain-containing protein ... [more]
UPI001B88E1FB4.660e-8452.67LOW QUALITY PROTEIN: ribosome maturation protein S... [more]
A0A0C9Q0K3_9HYME5.910e-8354.69Ribosome maturation protein SBDS n=2 Tax=Opiinae T... [more]
A0A7M7R6S1_APIME1.310e-8253.67Ribosome maturation protein SBDS n=21 Tax=Apoidea ... [more]
A0A7M7G5I7_NASVI2.380e-8253.91Ribosome maturation protein SBDS n=1 Tax=Nasonia v... [more]
UPI000771B1AA2.740e-8154.33ribosome maturation protein SBDS n=1 Tax=Cephus ci... [more]
A0A4D9CZ78_9STRA1.810e-8055.76C2H2-type domain-containing protein n=2 Tax=Monodo... [more]
A0A1X7V953_AMPQE2.940e-8052.90Ribosome maturation protein SBDS n=2 Tax=Amphimedo... [more]
A0A834JRM0_VESGE3.140e-8053.91Ribosome maturation protein SBDS n=4 Tax=Vespinae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6399contigP-wetherbeei_contig6399:60..2440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LRJ8
Preferred nameSBDS
PFAMsSBDS,SBDS_C
Model size846
Max annot lvl2759|Eukaryota
KEGG koko:K10737,ko:K14574
KEGG Pathwayko03008,map03008
Hectar predicted targeting categorymitochondrion
GOsGO:0000226,GO:0000278,GO:0000922,GO:0001501,GO:0001503,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007275,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008283,GO:0009605,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010467,GO:0015630,GO:0015631,GO:0016043,GO:0016070,GO:0016072,GO:0016477,GO:0019843,GO:0019899,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0030282,GO:0030595,GO:0030684,GO:0030687,GO:0031214,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0040007,GO:0040011,GO:0042221,GO:0042254,GO:0042255,GO:0042256,GO:0042330,GO:0043009,GO:0043021,GO:0043022,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0048513,GO:0048534,GO:0048539,GO:0048589,GO:0048731,GO:0048856,GO:0048870,GO:0050896,GO:0050900,GO:0051020,GO:0051179,GO:0051674,GO:0051716,GO:0060326,GO:0060348,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070887,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901363,GO:1902850,GO:1903047,GO:1990904
Exons7
Evalue6.45e-107
EggNOG OGsCOG1500@1|root,KOG2917@2759|Eukaryota
EC3.6.4.12
Descriptionmature ribosome assembly
Cds size846
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03009,ko03032
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6399.1.1prot_P-wetherbeei_contig6399.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6399 60..2440 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186910.0391953-CDS-P-wetherbeei_contig6399:59..1701683186910.0391953-CDS-P-wetherbeei_contig6399:59..170Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6399 60..170 +
1683186910.0567343-CDS-P-wetherbeei_contig6399:343..4241683186910.0567343-CDS-P-wetherbeei_contig6399:343..424Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6399 344..424 +
1683186910.072601-CDS-P-wetherbeei_contig6399:816..8971683186910.072601-CDS-P-wetherbeei_contig6399:816..897Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6399 817..897 +
1683186910.0807168-CDS-P-wetherbeei_contig6399:1171..13031683186910.0807168-CDS-P-wetherbeei_contig6399:1171..1303Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6399 1172..1303 +
1683186910.088537-CDS-P-wetherbeei_contig6399:1484..16411683186910.088537-CDS-P-wetherbeei_contig6399:1484..1641Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6399 1485..1641 +
1683186910.0964065-CDS-P-wetherbeei_contig6399:1897..20571683186910.0964065-CDS-P-wetherbeei_contig6399:1897..2057Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6399 1898..2057 +
1683186910.1041846-CDS-P-wetherbeei_contig6399:2316..24401683186910.1041846-CDS-P-wetherbeei_contig6399:2316..2440Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6399 2317..2440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6399.1.1

>prot_P-wetherbeei_contig6399.1.1 ID=prot_P-wetherbeei_contig6399.1.1|Name=mRNA_P-wetherbeei_contig6399.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=282bp
MSRGVFQPITQVRLTNVAIVRLSRAGKRFEIACYRNKVVNWRNKLETDID
EVLQINSIFQNVSKGVLAKKKDILDAFGTVDETEVCKASNIVILEKGEMQ
VSDKERQAAMDSTFRDIATIVSEKCVDPTSNRPYTVGMIQNAMRDIHYAT
VATRSAKQQALDVIRQLAAVMPIARACMRLRVVADAEGGPALRAALEALG
VDCGSGAGAVERRTVAEWTLDVLVDPGLFRKVEELVREQTGGQGQVQVLQ
LAVQEEGEADMDTELARKELLALQLGREKEGR
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mRNA from alignment at P-wetherbeei_contig6399:60..2440+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6399.1.1 ID=mRNA_P-wetherbeei_contig6399.1.1|Name=mRNA_P-wetherbeei_contig6399.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2381bp|location=Sequence derived from alignment at P-wetherbeei_contig6399:60..2440+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTCGCGGCGTCTTCCAGCCGATTACGCAAGTGCGATTGACGAACGT TGCCATCGTTCGACTGAGCCGCGCCGGGAAGCGGTTCGAGATTGCCTGCT ACCGCAACAAGGTGGGTGAATTTTTTTGGATAGTTTCGTCAGAAGACATT CTGTATGCTATTGACGGGCCGCAGTTTTCCTCTCGCCCTGCGATCCTTGA TGTCAACAACTTCCCTCGCTGAGCGCAGAAATTCGACTGGCCATTCTGCT GGCGCGATTAAAAAAATAAAATGACTCGTTGTAGGTGGTCAATTGGCGCA ACAAGCTGGAGACTGACATCGACGAGGTCCTTCAGATCAACAGCATCTTC CAGAATGTTTCCAAGGTGAGTCAATTGGGCGTGGCTGCAGAATGTTCGAT TTCTCCTGCCGCTGTGTCTAGCTCTCTACTCACCTGGGAACAAAAAATGG CTTCCTTTCCACCGCTCGAACATAGCAGCTTCGTGCATCCCAGTATACTT CAGTTTGGTCAAGTGATTATGCCTTCTCTTCGGGACTTTAACTGTCTCTG CGCCGCTTGCCGCTTTGCCGCTGCATTTGACGCGAAGCTGCGAACCCACC AATCATAGGCGCTCTCTGAGCAAAGAAATATTTCTTGGTCCGTGCCGGAA ATCCTTTTCGTCCCGTCGGCGCCTTCTCTTGCTCTCCTTCCCTTTAAACT TTGATTACCCCCTTCGGCCGCGGCTGGACATTTTGATGGACTGGCGAATG GGCGCAGGGCGTGCTGGCCAAGAAAAAGGACATCCTGGACGCCTTCGGGA CGGTCGACGAGACAGAAGTCTGTAAGGCAAGTAACATTGTAACGAAAGCG CTGAGATGGTGTGGACGGCAACATCACAGCGGCATTGCCGTGTTGCGGCG GCAATCACGGTGGCGGAGGCTCAAGCATTGAAAGGCGCCTCGGAAAATCG GTCTGTGCTTTGCACGTCGGTCTTTTGAGTTGGGTCTTCCATATCGAGGC GCAAGGATATACCCGCCATTCTCACTTTCACATTTCTGCTCACTCCTGCT TCGCACCGCGGAACTGCTGCCGACGGCGCATCTCTCACGGAACGACCGCC CGCCTTGCATAGGTGATTTTGGAAAAGGGGGAGATGCAGGTATCGGACAA AGAGCGGCAGGCCGCCATGGACAGCACCTTTCGGGACATCGCCACCATCG TCAGCGAAAAGTGCGTCGATCCGACGTCGAATCGACCGTACACGGTGAGG TGTGGCGTCCCACCCGATCGTTGCGTCCTGGTCGCTCCCATTCGCATTTG GATGAAACCACAACTTTTTGACTTTTTCCGAAATATTTGCCCTCTTGCAT TACCGCCTCCTTTCGCCACGGCATCAACGTCGGCGGCGGCATTGGCACGG TCTATTGCCGTACGTGGGCGGGCAGGTGGGGATGATCCAGAACGCGATGC GGGACATTCATTACGCGACTGTGGCGACACGAAGCGCCAAGCAACAGGCG CTCGATGTCATCCGCCAGCTGGCGGCCGTCATGCCCATTGCGAGGGCCTG CATGCGCCTCCGCGTCGTGGCCGACGCCGAAGGTACGTCCGAACGAGGTC ATTCTTTTGGCCTGTGGCGTGTGGTTAGGTCCTCTTTTGTCACTTGTTTA GCCCTATATCTCGGTGTTTCGCATCGGTTCGGCCAGCGCCTGGGCATTGT GACCTCTGTGACCCGGAACGACAGGAGTGTCTTTGTTTGCACGGATTCCT TTTGGCATTTTCCAAGCTGACTAGATGTGATAGCACTCTGATATTGACTT TCAATTGCGGAACATTGGGCGTGAAACGCCATTTGCAGGCGGGCCAGCGC TGCGGGCGGCGCTGGAAGCGTTGGGCGTTGACTGCGGCAGTGGCGCCGGC GCGGTGGAGCGGCGGACAGTGGCCGAGTGGACGCTGGACGTCCTCGTGGA CCCGGGACTCTTCCGGAAGGTGGAGGAACTCGTCCGCGAGCAGACCGGGT GAGTTACTGCCTTCTGAATTCGACCGGGTTTGTGGTCCGCGCAGTTCTTG GAACCTTGAGGATACATCATGCTTCTATGAAATGAATTGCTGCCACAACC TCTTGTTGTGATTGGACTGCAATGTTTCCGTATCTGAAGTAAGCGAGGTT TCCCTCTTTTGATCTCTGATCGCTCGCATCCGCCATTTCGACGCTGTGGC GGCAATGCGCGGCGTTCCTACCTTTGTCCTGCGTCCATGCATCGACACAA ACGGCAGGGGCCAGGGGCAGGTACAGGTGCTGCAGCTGGCGGTGCAGGAG GAGGGAGAGGCCGACATGGACACGGAGCTCGCGCGAAAGGAGCTGCTCGC GCTGCAGCTCGGCAGAGAGAAGGAGGGGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6399:60..2440+

>mRNA_P-wetherbeei_contig6399.1.1 ID=mRNA_P-wetherbeei_contig6399.1.1|Name=mRNA_P-wetherbeei_contig6399.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=846bp|location=Sequence derived from alignment at P-wetherbeei_contig6399:60..2440+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTCGCGGCGTCTTCCAGCCGATTACGCAAGTGCGATTGACGAACGT
TGCCATCGTTCGACTGAGCCGCGCCGGGAAGCGGTTCGAGATTGCCTGCT
ACCGCAACAAGGTGGTCAATTGGCGCAACAAGCTGGAGACTGACATCGAC
GAGGTCCTTCAGATCAACAGCATCTTCCAGAATGTTTCCAAGGGCGTGCT
GGCCAAGAAAAAGGACATCCTGGACGCCTTCGGGACGGTCGACGAGACAG
AAGTCTGTAAGGCAAGTAACATTGTGATTTTGGAAAAGGGGGAGATGCAG
GTATCGGACAAAGAGCGGCAGGCCGCCATGGACAGCACCTTTCGGGACAT
CGCCACCATCGTCAGCGAAAAGTGCGTCGATCCGACGTCGAATCGACCGT
ACACGGTGGGGATGATCCAGAACGCGATGCGGGACATTCATTACGCGACT
GTGGCGACACGAAGCGCCAAGCAACAGGCGCTCGATGTCATCCGCCAGCT
GGCGGCCGTCATGCCCATTGCGAGGGCCTGCATGCGCCTCCGCGTCGTGG
CCGACGCCGAAGGCGGGCCAGCGCTGCGGGCGGCGCTGGAAGCGTTGGGC
GTTGACTGCGGCAGTGGCGCCGGCGCGGTGGAGCGGCGGACAGTGGCCGA
GTGGACGCTGGACGTCCTCGTGGACCCGGGACTCTTCCGGAAGGTGGAGG
AACTCGTCCGCGAGCAGACCGGGGGCCAGGGGCAGGTACAGGTGCTGCAG
CTGGCGGTGCAGGAGGAGGGAGAGGCCGACATGGACACGGAGCTCGCGCG
AAAGGAGCTGCTCGCGCTGCAGCTCGGCAGAGAGAAGGAGGGGCGG
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