mRNA_P-wetherbeei_contig6325.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6325.2.1
Unique NamemRNA_P-wetherbeei_contig6325.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6325.2.1 vs. uniprot
Match: A0A6H5K6W9_9PHAE (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W9_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.470e-5
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:  406 ERRRAEEGKER-SFVRSFPHQRGNWPAYVYLPVPETDAIKELCIESMAHLEARLARA 573
            ERRRAEE      +VR FPH+RGNWP +V++PVP + A K +   S++H   RLA A
Sbjct:   49 ERRRAEERAGNIPWVRRFPHERGNWPTHVFIPVPNSSAFKSMAEASVSHFRQRLAAA 105
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BLAST of mRNA_P-wetherbeei_contig6325.2.1 vs. uniprot
Match: D7FRL4_ECTSI (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL4_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.510e-5
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:  406 ERRRAEE--GKERSFVRSFPHQRGNWPAYVYLPVPETDAIKELCIESMAHLEARLARA 573
            ERRRAEE  G  R +VR FPH+RGNWP +V++PVP + A K +   S++H   RLA A
Sbjct:   60 ERRRAEERAGNIR-WVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATA 116
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6325.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6W9_9PHAE1.470e-550.88U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus sp... [more]
D7FRL4_ECTSI1.510e-553.45U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6325contigP-wetherbeei_contig6325:2..2380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FRL4
Preferred nameUSB1
PFAMsHVSL
Model size2266
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
GOsGO:0000175,GO:0002376,GO:0002520,GO:0002521,GO:0002573,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0008408,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016073,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0030097,GO:0030099,GO:0030154,GO:0030223,GO:0030851,GO:0031123,GO:0031323,GO:0032501,GO:0032502,GO:0034470,GO:0034472,GO:0034477,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0043628,GO:0044237,GO:0044238,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045171,GO:0046483,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1990838
Exons2
Evalue4.87e-07
EggNOG OGsKOG3102@1|root,KOG3102@2759|Eukaryota
DescriptionU6 snRNA 3'-end processing
Cds size882
COG categoryJ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186905.054373-UTR-P-wetherbeei_contig6325:1..1931683186905.054373-UTR-P-wetherbeei_contig6325:1..193Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6325 2..193 +
1683186905.0923886-UTR-P-wetherbeei_contig6325:1188..23801683186905.0923886-UTR-P-wetherbeei_contig6325:1188..2380Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6325 1189..2380 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186905.074209-CDS-P-wetherbeei_contig6325:193..5001683186905.074209-CDS-P-wetherbeei_contig6325:193..500Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6325 194..500 +
1683186905.0832067-CDS-P-wetherbeei_contig6325:613..11881683186905.0832067-CDS-P-wetherbeei_contig6325:613..1188Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6325 614..1188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6325.2.1prot_P-wetherbeei_contig6325.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6325 194..1188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6325.2.1

>prot_P-wetherbeei_contig6325.2.1 ID=prot_P-wetherbeei_contig6325.2.1|Name=mRNA_P-wetherbeei_contig6325.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=294bp
MIATRILRPRLQHHASRAWPICCSSSTSTAVSLGAEHWFLRALEAGAKPW
EPSQYASFTYPSLPAAYFHENERRRAEEGKERSFVRSFPHQRGNWPAYVY
LPVPETDAIKELCIESMAHLEARLARAAGRRPFKRRRTKPKRGGVGGGAA
ATTAASNAADEQRKPQLQQRRGDSNNNGSNSGGGNSGGIGGSNGGIGDGD
SSRGSSSGGIAAPPRLVPSASLANFSGHHHLSLSRTAVLQHHHIEAFAAD
LGCALNGVRRCFGVAGFAWCFRSFGGLLRFRGLLRSAGSLSAV*
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mRNA from alignment at P-wetherbeei_contig6325:2..2380+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6325.2.1 ID=mRNA_P-wetherbeei_contig6325.2.1|Name=mRNA_P-wetherbeei_contig6325.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2379bp|location=Sequence derived from alignment at P-wetherbeei_contig6325:2..2380+ (Phaeothamnion wetherbeei SAG_119_79)
CTTTTGGATAAGATCTCATTCTCTACCTCTTCTGATCCACACTTAAGGAG
GTGTACCGTTCTTACGCCACTGCTCAAAGAAAGAAGAGCACGCTCCGAGC
CCCCTTCCTCCGACGTTCTGACTTGCCGTAGCCGGAAGTCCTCCTCCGAC
TCCCCTCCGCGCGAATGGATTTGTTGGCGCAGTACGCCTCGGATGATAGC
GACGCGGATCCTGCGCCCAAGGCTCCAACATCACGCCTCCCGGGCGTGGC
CGATCTGTTGCAGCAGCTCTACGTCGACAGCCGTGAGTCTTGGCGCCGAG
CATTGGTTCTTGCGGGCGCTTGAAGCTGGAGCTAAACCTTGGGAACCGTC
CCAGTACGCGTCATTCACATATCCCTCTCTCCCCGCAGCTTACTTCCACG
AGAACGAGCGGCGAAGAGCAGAGGAAGGAAAAGAAAGGAGCTTCGTGCGC
AGCTTTCCCCACCAGCGCGGCAACTGGCCCGCGTATGTGTATTTGCCTGG
TGAGGCGCGTCTCTCGACCCAAGCCGCTTGGCTGCGACTAGTCTTCCAGT
CGTCTAAATCCGTTTTCACCAAGGCGATTTGCACATTGCGCTTTACGATT
CATTGCGTGCAGTGCCAGAGACGGACGCAATCAAGGAGCTCTGCATCGAG
AGCATGGCGCACCTCGAGGCTCGCCTTGCGCGGGCCGCCGGTCGCCGCCC
CTTCAAGCGGCGGCGCACCAAGCCGAAGCGAGGAGGAGTCGGTGGAGGGG
CAGCGGCGACGACGGCGGCGTCAAATGCCGCGGACGAGCAGCGAAAGCCG
CAGCTGCAGCAGCGCCGTGGTGACTCCAACAATAATGGCAGCAACAGCGG
CGGCGGCAACAGCGGCGGCATTGGCGGCAGCAACGGTGGCATTGGCGACG
GCGACAGTAGCCGCGGTAGCAGCAGCGGCGGCATCGCGGCTCCTCCCCGG
TTGGTGCCGAGCGCTTCGCTGGCCAACTTCTCGGGGCACCACCACCTGAG
CCTATCGCGGACTGCCGTGCTGCAGCATCACCATATTGAGGCCTTCGCGG
CCGACCTGGGATGTGCGCTCAACGGCGTGCGGAGGTGCTTTGGCGTCGCT
GGCTTTGCTTGGTGTTTTCGAAGTTTTGGTGGCCTGCTACGATTTAGGGG
CTTGCTACGATCTGCCGGCTCGCTTTCCGCTGTGTGATGCCGTCTTCGCG
ATAGCATGCTCCATTTTGCTAGAGGGAGAGACCTCGAAATTTCCGGGCGC
TTGGCTGTTTTCCACTCGAGCAGGTCGCTCAAAACTTCTTGCTTTTGCTT
GCTCTGCGTTGCCTTTCAACCGCCTTTCTTTTATTTCCGCCGTACCTGTC
ATTTTCTCGCTTCCAGATTCGCCGTGGTGGTGAGCGGGAGCTATGACGTG
CTGGTGAATGAGGAGCGGACGCGGTCCTTCCAGGCGCTGCGAGTGGTGGG
CGGGACCGAGGCGGTTGTCGGACTCATCCGTCGCGTCGACAGCGTCGTCG
CCGCTTACAAGCAGCCTCTGTACCACCAGGTGCGCATTAATCTCTTACTG
CGCCTCTTTTCAGAGGGCTCTTGTGAAGATGTCTGTCCGTTTCTTGCGCC
TGTGCTCAGACCATAAGACGCTTGCCGAGGCTTCTTATCATATTTTTCTT
CGATTCCGTCAACGGGGAGCAAATGCTGTGAGTGCTGTGCAATTTAGCTG
ATGGCATATTGCGTTTCTCGTGTACTTACAACTCGCCTTTGACCTGCCTG
CCCCTGCGCTTTTAGGAGCCGATTCCACATGTGAGCGTGGCGTCTTGTTT
GGGAGATGTTTCGGAGCTGCTTTCGGCACATTGCGTGGGCAGTGACAAAG
ATCCTCACATCGATGGCAACTTGGGCGCCAGCAGCAGCAACGCAGAAGGC
GATGGGGCCGGAAGCAAACGGGTCGGCTGTCAGGACGCGGGCAAGGGCGA
CACCAGCGGGAATGGCCGTGGCGGCGGTAAGTCCGGAGAGCAGACTGGCG
ATGGTGGCGGCAGCAGCAGCGACGAATACGTGTCGGAAGTCACAGTGCCA
GTGACCAGCGTCGTCTGTCGCGTGGCGCACCACGTCTTCAACATTCCGCT
GCTGGAAAGCTAATCAAGCTGGGAGAAGCGGGTGCATGACGTCTTCGCTA
TAAAAACGTGGCAGCGCGTCCAAGGCAGTGTTACTGAACGCATTCATTTA
GTAAGTGTGCTTCCGAATTGGCTACGGTGGGGCACAAGGGATCGGATGGG
CAAGCCTGCTAGCACCTTGGGTGCAGCGAGCGGTCATGCAACGTGCGAAA
TATTAAAGGTAACCCGAGAGAAGGAATTGCACAACGACAGAGAACATAGC
CGCCAAATAAAAGGCAATAAGATCCCCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6325:2..2380+

>mRNA_P-wetherbeei_contig6325.2.1 ID=mRNA_P-wetherbeei_contig6325.2.1|Name=mRNA_P-wetherbeei_contig6325.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=882bp|location=Sequence derived from alignment at P-wetherbeei_contig6325:2..2380+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATAGCGACGCGGATCCTGCGCCCAAGGCTCCAACATCACGCCTCCCG
GGCGTGGCCGATCTGTTGCAGCAGCTCTACGTCGACAGCCGTGAGTCTTG
GCGCCGAGCATTGGTTCTTGCGGGCGCTTGAAGCTGGAGCTAAACCTTGG
GAACCGTCCCAGTACGCGTCATTCACATATCCCTCTCTCCCCGCAGCTTA
CTTCCACGAGAACGAGCGGCGAAGAGCAGAGGAAGGAAAAGAAAGGAGCT
TCGTGCGCAGCTTTCCCCACCAGCGCGGCAACTGGCCCGCGTATGTGTAT
TTGCCTGTGCCAGAGACGGACGCAATCAAGGAGCTCTGCATCGAGAGCAT
GGCGCACCTCGAGGCTCGCCTTGCGCGGGCCGCCGGTCGCCGCCCCTTCA
AGCGGCGGCGCACCAAGCCGAAGCGAGGAGGAGTCGGTGGAGGGGCAGCG
GCGACGACGGCGGCGTCAAATGCCGCGGACGAGCAGCGAAAGCCGCAGCT
GCAGCAGCGCCGTGGTGACTCCAACAATAATGGCAGCAACAGCGGCGGCG
GCAACAGCGGCGGCATTGGCGGCAGCAACGGTGGCATTGGCGACGGCGAC
AGTAGCCGCGGTAGCAGCAGCGGCGGCATCGCGGCTCCTCCCCGGTTGGT
GCCGAGCGCTTCGCTGGCCAACTTCTCGGGGCACCACCACCTGAGCCTAT
CGCGGACTGCCGTGCTGCAGCATCACCATATTGAGGCCTTCGCGGCCGAC
CTGGGATGTGCGCTCAACGGCGTGCGGAGGTGCTTTGGCGTCGCTGGCTT
TGCTTGGTGTTTTCGAAGTTTTGGTGGCCTGCTACGATTTAGGGGCTTGC
TACGATCTGCCGGCTCGCTTTCCGCTGTGTGA
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