prot_P-wetherbeei_contig6325.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig6325.2.1
Unique Nameprot_P-wetherbeei_contig6325.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length294
Homology
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BLAST of mRNA_P-wetherbeei_contig6325.2.1 vs. uniprot
Match: A0A6H5K6W9_9PHAE (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W9_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.640e-6
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 0 
Query:   72 ERRRAEEGKER-SFVRSFPHQRGNWPAYVYLPVPETDAIKELCIESMAHLEARLARA 127
            ERRRAEE      +VR FPH+RGNWP +V++PVP + A K +   S++H   RLA A
Sbjct:   49 ERRRAEERAGNIPWVRRFPHERGNWPTHVFIPVPNSSAFKSMAEASVSHFRQRLAAA 105
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BLAST of mRNA_P-wetherbeei_contig6325.2.1 vs. uniprot
Match: D7FRL4_ECTSI (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL4_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 2.970e-6
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 0 
Query:   72 ERRRAEE--GKERSFVRSFPHQRGNWPAYVYLPVPETDAIKELCIESMAHLEARLARA 127
            ERRRAEE  G  R +VR FPH+RGNWP +V++PVP + A K +   S++H   RLA A
Sbjct:   60 ERRRAEERAGNIR-WVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATA 116
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6325.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6W9_9PHAE2.640e-650.88U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus sp... [more]
D7FRL4_ECTSI2.970e-653.45U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus si... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027521U6 snRNA phosphodiesterase 1PFAMPF09749HVSLcoord: 77..256
e-value: 9.0E-13
score: 48.2
NoneNo IPR availableGENE3D3.90.1140.10Cyclic phosphodiesterasecoord: 87..277
e-value: 6.7E-13
score: 50.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..213
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..188

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6325contigP-wetherbeei_contig6325:194..1188 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6325.2.1mRNA_P-wetherbeei_contig6325.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig6325 2..2380 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig6325.2.1 ID=prot_P-wetherbeei_contig6325.2.1|Name=mRNA_P-wetherbeei_contig6325.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=294bp
MIATRILRPRLQHHASRAWPICCSSSTSTAVSLGAEHWFLRALEAGAKPW
EPSQYASFTYPSLPAAYFHENERRRAEEGKERSFVRSFPHQRGNWPAYVY
LPVPETDAIKELCIESMAHLEARLARAAGRRPFKRRRTKPKRGGVGGGAA
ATTAASNAADEQRKPQLQQRRGDSNNNGSNSGGGNSGGIGGSNGGIGDGD
SSRGSSSGGIAAPPRLVPSASLANFSGHHHLSLSRTAVLQHHHIEAFAAD
LGCALNGVRRCFGVAGFAWCFRSFGGLLRFRGLLRSAGSLSAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027521Usb1