mRNA_P-wetherbeei_contig6191.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6191.1.1
Unique NamemRNA_P-wetherbeei_contig6191.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6191.1.1 vs. uniprot
Match: A0A6H5KZB1_9PHAE (RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZB1_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 4.470e-24
Identity = 62/107 (57.94%), Postives = 81/107 (75.70%), Query Frame = 1
Query:  244 QPMAAVSSGTDALNANNLEAAILDVNPDEAIEMRQKQRVLHWDKRKHKYIKTSVAELAEQR--GAKKIRTESGVVVRGKDAKQNKGELYDAWKKRSHRAVGRLGEEE 558
            QP +   SG D   A  LE AILDVNPDEA++M +KQR+LHWD RK K++KT++AEL E++  G++KIRTESGVVV+ K+A Q  GE+Y  WK+ S+R VGR G+EE
Sbjct:  792 QPRSVEKSG-DGFAAGRLEEAILDVNPDEAVDMAKKQRLLHWDSRKKKFVKTTLAELGERKTGGSRKIRTESGVVVKAKNAPQ--GEIYAKWKRASNRQVGREGDEE 895          
BLAST of mRNA_P-wetherbeei_contig6191.1.1 vs. uniprot
Match: A0A835Z3G9_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3G9_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.000e-21
Identity = 83/219 (37.90%), Postives = 117/219 (53.42%), Query Frame = 1
Query:  244 QPMAAVSSGTDALNANNLEAAILDVNPDEAIEMRQKQRVLHWDKRKHKYIKTSVAELAEQRGAKKIRTESGVVVRGKDAKQNKGELYDAWKKRSHRAVGRLGEEEAARGPR-----------PAGGGGGAYGRNSXXXXRYGPGGGEVANANAKDELRGKAQMRKEKKKVEFLKLKNMPAAKRRAVASKQKAAYMAKRGAKERSPAQGGGALRRRSRQL 867
            QP +   +G D    + L  A+LDVNPDEA++M +KQRVLHWD RKHK++KTS+AE+++ +  + +R E+GV+V  K  KQ  GE++  W+K+S R VGR G+EE                 P G  GGA G                  A A+DELR   Q+RK + K +   L++MP  KR A   + KA +  +   K  +  QG    R RSR +
Sbjct:  730 QPRSVEKAG-DGFATDRLAEAMLDVNPDEAVDMVRKQRVLHWDARKHKFVKTSLAEMSDNK-KRTVRNEAGVMVTAK--KQKAGEIFSKWQKKSRREVGREGDEEXXXXXXXXXXXXXXXXXPRGAKGGAAG---------------APGARARDELRSAGQVRKLRDKQKNDALRSMPKEKRAAALRRSKADFQRRAAEKRAASFQG----RTRSRAI 925          
BLAST of mRNA_P-wetherbeei_contig6191.1.1 vs. uniprot
Match: W7TM98_9STRA (RNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM98_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.550e-20
Identity = 51/101 (50.50%), Postives = 74/101 (73.27%), Query Frame = 1
Query:  256 AVSSGTDALNANNLEAAILDVNPDEAIEMRQKQRVLHWDKRKHKYIKTSVAELAEQRGAKKIRTESGVVVRGKDAKQNKGELYDAWKKRSHRAVGRLGEEE 558
            +V  G++AL AN LE A+LDV PDEA+EM +++R++HWD RK KY++ +++EL E RG KK+RTESGV V G  + Q  GE+Y  W+KR+++ V   G +E
Sbjct:  784 SVEKGSEALLANRLEEALLDVQPDEALEMVKRKRIMHWDARKKKYVRATMSELGEGRGQKKLRTESGVTVSG--SSQATGEIYKKWQKRTNKTVSLAGGDE 882          
BLAST of mRNA_P-wetherbeei_contig6191.1.1 vs. uniprot
Match: A0A7S4DFA2_HETAK (RNA helicase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFA2_HETAK)

HSP 1 Score: 90.1 bits (222), Expect = 5.250e-18
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = 1
Query:  295 LEAAILDVNPDEAIEMRQKQRVLHWDKRKHKYIKTSVAELAEQRGAKKIRTESGVVVRGKDAKQNKGELYDAWKKRSHRAVGRLG-EEEAA 564
            LE ++LD+NPD A EM +K++ +HWD RK KYIKT+V ELA+QRG  K+RTESG +V  K      GELY  WK ++H+ V   G EEEAA
Sbjct:  102 LEDSLLDINPDTAQEMHKKKQFMHWDARKKKYIKTTVQELAKQRGNSKLRTESGAIVNKKVVPT--GELYQKWKSKTHKEVAGEGIEEEAA 190          
BLAST of mRNA_P-wetherbeei_contig6191.1.1 vs. uniprot
Match: A0A7S3LXT9_9STRA (RNA helicase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LXT9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.280e-16
Identity = 59/174 (33.91%), Postives = 102/174 (58.62%), Query Frame = 1
Query:  244 QPMAAVSSGTDALNANNLEAAILDVNPDEAIEMRQKQRVLHWDKRKHKYIKTSVAELAE--QRGAKKIRTESGVVVRGKDAKQNKGELYDAWKKRSHRAVGRLGEEEAARGPRPAGGGGGAYGRNSXXXXRYGPGGGEVANANAKDELRGKAQMRKEKKKVEFLKLKNMPAAKR 759
            QP + + S ++++NA  ++ A+LD++PD+A+++  K+R+L WD +K K++K ++ E+AE  +RG K++RTE+G++   K +   +GE+Y+ WKKR+H+ +G         G  P  G             R GP      N+  +DELR  +++R  K   + +KLKNM   KR
Sbjct:  313 QPQSNLRS-SESMNAMKMDRALLDISPDDAVDLNNKKRILRWDAKKRKFVKQTLQEMAENQKRGVKRMRTETGII--SKKSALPQGEMYEKWKKRTHKEIG---------GNDPDAG-----------TTRMGPN--VKVNSKVRDELRSASEIRSLKAGKDNMKLKNMKKDKR 461          
BLAST of mRNA_P-wetherbeei_contig6191.1.1 vs. uniprot
Match: H3GSH8_PHYRM (RNA helicase n=20 Tax=Peronosporaceae TaxID=4777 RepID=H3GSH8_PHYRM)

HSP 1 Score: 87.8 bits (216), Expect = 1.320e-15
Identity = 65/152 (42.76%), Postives = 83/152 (54.61%), Query Frame = 1
Query:  295 LEAAILDVNPDEAIEMRQKQRVLHWDKRKHKYIKTSVAELAEQRGAKKIRTESGVVVRGKDAKQNKGELYDAWKKRSHRAVGRLGEE------------EAARGPRPAGGGGGAYGRNSXXXXRYGPGGGEVANANAKDELRGKAQMRKEKK 714
            LE AILDVNPDEAIEM +K+R+LHWD RK K++KT+  EL  Q G  K R ESGV VR    KQ  GE+Y  W+++ H+ V   G E            +   G +P GG     G+ S              N NAKDEL  + ++RKE+K
Sbjct:  658 LEEAILDVNPDEAIEMNKKRRILHWDVRKKKFVKTTAGELTSQ-GTLKRRNESGVNVR---KKQQVGEVYRKWQQKQHKRVAGGGVEIEDDDDTSSRKLDYRHGRKPRGGAA-VMGKRSS------------VNKNAKDELMSEGKIRKEEK 792          
BLAST of mRNA_P-wetherbeei_contig6191.1.1 vs. uniprot
Match: A0A7S2WEZ0_9STRA (RNA helicase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEZ0_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.430e-15
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:  316 VNPDEAIEMRQKQRVLHWDKRKHKYIKTSVAELAE-QRGAKKIRTESGVVVRGKDAKQNKGELYDAWKKRSHRAV 537
            + PDE  E  +KQR+ HWDKRK KY+K S++E+A+ QRGAKK+RTESG  V  K  K++ GELY  WK+ + R++
Sbjct:    1 LTPDETSEQWKKQRLYHWDKRKRKYVKQSISEMADSQRGAKKLRTESGASVLSKKMKESAGELYQKWKQSTRRSI 75          
BLAST of mRNA_P-wetherbeei_contig6191.1.1 vs. uniprot
Match: D0N6Y7_PHYIT (RNA helicase n=6 Tax=Phytophthora TaxID=4783 RepID=D0N6Y7_PHYIT)

HSP 1 Score: 86.3 bits (212), Expect = 4.370e-15
Identity = 65/149 (43.62%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  295 LEAAILDVNPDEAIEMRQKQRVLHWDKRKHKYIKTSVAELAEQRGAKKIRTESGVVVRGKDAKQNKGELYDAWKKRSHRAVGRLG---EEEAARGPRPAGGGGGAYGRNSXXXXRYGPGGGEV------ANANAKDELRGKAQMRKEKK 714
            LE AILDVNPDEAIEM +K+R+LHWD RK K++KT+  EL  Q G  K R ESGV VR    KQ  GE+Y  W+++ H+ V   G   E++   G           GR         P GG V       N +AKDEL  + ++RKE+K
Sbjct:  673 LEEAILDVNPDEAIEMNKKRRILHWDVRKKKFVKTTAGELTSQ-GTLKRRNESGVSVR---KKQQVGEVYRKWQQKQHKRVAGGGVEVEDDDNTG-----------GRKLDYRNGRKPRGGAVMAKRSGVNKHAKDELMSEGKIRKEEK 806          
BLAST of mRNA_P-wetherbeei_contig6191.1.1 vs. uniprot
Match: A0A662XA09_9STRA (RNA helicase (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XA09_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.040e-14
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  295 LEAAILDVNPDEAIEMRQKQRVLHWDKRKHKYIKTSVAELAEQRGAKKIRTESGVVVRGKDAKQNKGELYDAWKKRSHRAV 537
            LE AILDVNPDEAIEM +K+R+LHWD RK K++KT+  EL  Q G  K R ESGV VR    KQ  GE+Y  W+++ H+ V
Sbjct:  348 LEEAILDVNPDEAIEMNKKRRILHWDVRKKKFVKTTAGELTSQ-GTLKRRNESGVSVR---KKQQVGEVYRKWQQKQHKRV 424          
BLAST of mRNA_P-wetherbeei_contig6191.1.1 vs. uniprot
Match: A0A484EF95_BRELC (RNA helicase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EF95_BRELC)

HSP 1 Score: 81.3 bits (199), Expect = 4.230e-14
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  295 LEAAILDVNPDEAIEMRQKQRVLHWDKRKHKYIKTSVAELAEQRGAKKIRTESGVVVRGKDAKQNKGELYDAWKKRSHRAV 537
            LE AILDVNPDEAIEM +K+R+LHWD RK K++KT+  EL  Q G  K R ESGV  R    KQ  GE+Y  W+++ H+ V
Sbjct:  114 LEEAILDVNPDEAIEMNKKRRILHWDVRKKKFVKTTAGELTSQ-GTLKRRNESGVNFR---KKQQFGEVYRKWQQKQHKRV 190          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6191.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZB1_9PHAE4.470e-2457.94RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A835Z3G9_9STRA1.000e-2137.90RNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
W7TM98_9STRA1.550e-2050.50RNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A7S4DFA2_HETAK5.250e-1854.95RNA helicase (Fragment) n=1 Tax=Heterosigma akashi... [more]
A0A7S3LXT9_9STRA5.280e-1633.91RNA helicase n=1 Tax=Spumella elongata TaxID=89044... [more]
H3GSH8_PHYRM1.320e-1542.76RNA helicase n=20 Tax=Peronosporaceae TaxID=4777 R... [more]
A0A7S2WEZ0_9STRA1.430e-1553.33RNA helicase (Fragment) n=1 Tax=Rhizochromulina ma... [more]
D0N6Y7_PHYIT4.370e-1543.62RNA helicase n=6 Tax=Phytophthora TaxID=4783 RepID... [more]
A0A662XA09_9STRA2.040e-1456.79RNA helicase (Fragment) n=2 Tax=Nothophytophthora ... [more]
A0A484EF95_BRELC4.230e-1455.56RNA helicase n=1 Tax=Bremia lactucae TaxID=4779 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6191contigP-wetherbeei_contig6191:142..1583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra79957
PFAMsDBP10CT,DEAD,Helicase_C
Model size911
Max annot lvl4776|Peronosporales
KEGG koko:K14808
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.68e-17
EggNOG OGsCOG0513@1|root,KOG0337@2759|Eukaryota,3Q95I@4776|Peronosporales
EC3.6.4.13
DescriptionDEAD-like helicases superfamily
Cds size636
COG categoryA
BRITEko00000,ko01000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186895.3696573-UTR-P-wetherbeei_contig6191:141..3901683186895.3696573-UTR-P-wetherbeei_contig6191:141..390Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6191 142..390 +
1683186895.4124768-UTR-P-wetherbeei_contig6191:1557..15831683186895.4124768-UTR-P-wetherbeei_contig6191:1557..1583Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6191 1558..1583 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186895.381055-CDS-P-wetherbeei_contig6191:390..4951683186895.381055-CDS-P-wetherbeei_contig6191:390..495Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6191 391..495 +
1683186895.3905017-CDS-P-wetherbeei_contig6191:763..12281683186895.3905017-CDS-P-wetherbeei_contig6191:763..1228Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6191 764..1228 +
1683186895.400345-CDS-P-wetherbeei_contig6191:1491..15571683186895.400345-CDS-P-wetherbeei_contig6191:1491..1557Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6191 1492..1557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6191.1.1prot_P-wetherbeei_contig6191.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6191 391..1557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6191.1.1

>prot_P-wetherbeei_contig6191.1.1 ID=prot_P-wetherbeei_contig6191.1.1|Name=mRNA_P-wetherbeei_contig6191.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=212bp
MAAVSSGTDALNANNLEAAILDVNPDEAIEMRQKQRVLHWDKRKHKYIKT
SVAELAEQRGAKKIRTESGVVVRGKDAKQNKGELYDAWKKRSHRAVGRLG
EEEAARGPRPAGGGGGAYGRNSGGGGRYGPGGGEVANANAKDELRGKAQM
RKEKKKVEFLKLKNMPAAKRRAVASKQKAAYMAKRGAKERSPAQGGGALR
RRSRQLPGGNH*
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mRNA from alignment at P-wetherbeei_contig6191:142..1583+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6191.1.1 ID=mRNA_P-wetherbeei_contig6191.1.1|Name=mRNA_P-wetherbeei_contig6191.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1442bp|location=Sequence derived from alignment at P-wetherbeei_contig6191:142..1583+ (Phaeothamnion wetherbeei SAG_119_79)
CCGAGGCGCAAGCCTTCACCGAGTCGGCGCTTGAGGTGAGCTCCGCCGCC GAGCGGTTCATGCTTCAGACTACCTCTCCAGTTGAAGATGACTTTGAAAT CGAGACGGCGTGTTGCTCTCAATCTAGCTGTGGAAGACGTGTTTGAAACT GATTGACGACTCGCGTCGTCGCGAATTGGGCCAGCCAGCGTACAATTTCT CTTTGCTCTCTTTTCCCTTCCTTTTGAATCTCATCCCGTCCCGCAGCCGA TGGCGGCGGTGTCATCGGGCACGGACGCCCTCAACGCCAACAACCTCGAG GCGGCCATCCTTGACGTCAACCCTGACGAGGCCATCGAGATGCGCCAAAA GCAGGTCAGAAGGAGATGTCGAGTGGACGTTTGTTGGGTTGTCTAGATCA AGAAAATCCGGCTTGTGCTTGTCGTTTCAAATTATCGACTTGTGTCTTTT ACCCAGGAAAGACGCCCGCTGCTTGCGTCTGGCCGGTTCTAGCGAACCAG AAGGAGAAAAAACTTGCCTTGGCATTTTTTCCTTCACTGGCCTTCCCGTC ACTGTGTTCCCTGACGCTGTGCGTCGCCGCTTGCGCCGCTGTTTCCCTCG CCATTACTCCACTGCGTGCCAGCGCGTGCTGCATTGGGACAAGCGCAAGC ACAAGTACATCAAGACGAGCGTGGCGGAGCTGGCGGAGCAGAGGGGCGCC AAGAAGATCCGCACCGAGAGCGGCGTCGTCGTCCGCGGCAAGGACGCCAA GCAGAACAAGGGCGAGCTCTATGACGCCTGGAAGAAGCGCAGCCACCGTG CCGTCGGCCGCCTGGGGGAGGAGGAGGCTGCGCGGGGGCCACGGCCTGCC GGCGGCGGCGGCGGGGCTTATGGCCGCAACAGCGGCGGCGGCGGGCGGTA CGGGCCCGGCGGTGGCGAGGTGGCTAACGCCAACGCCAAGGACGAGCTGC GCGGTAAGGCGCAGATGCGCAAGGAGAAGAAGAAGGTGGAGTTCCTCAAG CTGAAGAATATGCCGGCGGCGAAGCGGCGGGCGGTCGCGTCCAAGCAGAA AGCGGCGTACATGGCCAAGCGCGGCGCCAAGGAGCGCGCCAACTTCCAGG GCCGCACCCGCAGCCGCATGATTGTCCGCGTTTAAAGAGAATAGTAAAAA TGTTAAACGTAAATTGTCTTTTTCCACACGGCTTTTTGCTGCGACATTGT GCTGTTGCACCGCTCAGGCGCGAGACATGCTGCCAATTCGTTCGTGAAAT AAGAGGTGCAACGAACACGATGGGAAACCGTCTCAGACGACGGATAAGAG ATGTAGAGAAGACTCTTTTTTCCTTCTTTTGACCGGCCCAAATGTCTTAG TCACCTGCCCAGGGTGGTGGTGCACTCCGACGCCGCAGCAGGCAGCTGCC AGGGGGGAATCACTGACGTAGCAGACCACTGGCAAGGGGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6191:142..1583+

>mRNA_P-wetherbeei_contig6191.1.1 ID=mRNA_P-wetherbeei_contig6191.1.1|Name=mRNA_P-wetherbeei_contig6191.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=636bp|location=Sequence derived from alignment at P-wetherbeei_contig6191:142..1583+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCGGTGTCATCGGGCACGGACGCCCTCAACGCCAACAACCTCGA
GGCGGCCATCCTTGACGTCAACCCTGACGAGGCCATCGAGATGCGCCAAA
AGCAGCGCGTGCTGCATTGGGACAAGCGCAAGCACAAGTACATCAAGACG
AGCGTGGCGGAGCTGGCGGAGCAGAGGGGCGCCAAGAAGATCCGCACCGA
GAGCGGCGTCGTCGTCCGCGGCAAGGACGCCAAGCAGAACAAGGGCGAGC
TCTATGACGCCTGGAAGAAGCGCAGCCACCGTGCCGTCGGCCGCCTGGGG
GAGGAGGAGGCTGCGCGGGGGCCACGGCCTGCCGGCGGCGGCGGCGGGGC
TTATGGCCGCAACAGCGGCGGCGGCGGGCGGTACGGGCCCGGCGGTGGCG
AGGTGGCTAACGCCAACGCCAAGGACGAGCTGCGCGGTAAGGCGCAGATG
CGCAAGGAGAAGAAGAAGGTGGAGTTCCTCAAGCTGAAGAATATGCCGGC
GGCGAAGCGGCGGGCGGTCGCGTCCAAGCAGAAAGCGGCGTACATGGCCA
AGCGCGGCGCCAAGGAGCGCTCACCTGCCCAGGGTGGTGGTGCACTCCGA
CGCCGCAGCAGGCAGCTGCCAGGGGGGAATCACTGA
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