mRNA_P-wetherbeei_contig5938.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5938.1.1
Unique NamemRNA_P-wetherbeei_contig5938.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5938.1.1 vs. uniprot
Match: A0A835YVT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVT5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.280e-18
Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:   25 GVKPENYVASAVLCYNAASGGLEWARRLDISVDEASSRAYVYASATVADIDGDSIYEVVIGTAAGALYVLNADTGDVRSGFPLRTGGEIHAQ 300
            GV+PE YV   +L ++ A     W   LD++ DE   RAY+YAS TVAD+DGD   EVV+ TA G +Y L+A++G+VR GFP++ G EI AQ
Sbjct:  254 GVRPEKYVGGGLLAFDFALQDWLWTVHLDLTTDETRHRAYIYASPTVADLDGDGHLEVVVSTAMGLVYALDAESGEVRKGFPVQFG-EIQAQ 344
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BLAST of mRNA_P-wetherbeei_contig5938.1.1 vs. uniprot
Match: A0A8J5KSP1_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KSP1_ZINOF)

HSP 1 Score: 76.3 bits (186), Expect = 8.280e-13
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:   25 GVKPENYVASAVLCYNAASGGLEWARRLDISVDEASSRAYVYASATVADIDGDSIYEVVIGTAAGALYVLNADTGDVRSGFPLRTGGEIHAQA 303
            G+  E YVAS ++ +N  +  ++W + LD+SVD  +SRAYVY+S TV D+DGD   ++++GT+ G  Y+L+   G VR+ F L    EI A A
Sbjct:  254 GINIEKYVASGIVVFNLDTKQVKWIQDLDLSVDSGNSRAYVYSSPTVVDLDGDGKLDILVGTSYGLFYILDHH-GQVRNKFSLEMA-EIQAPA 344
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BLAST of mRNA_P-wetherbeei_contig5938.1.1 vs. uniprot
Match: A0A6I9RAM0_ELAGV (protein DEFECTIVE IN EXINE FORMATION 1 isoform X1 n=5 Tax=Arecaceae TaxID=4710 RepID=A0A6I9RAM0_ELAGV)

HSP 1 Score: 71.6 bits (174), Expect = 5.060e-11
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:   25 GVKPENYVASAVLCYNAASGGLEWARRLDISVDEASSRAYVYASATVADIDGDSIYEVVIGTAAGALYVLNADTGDVRSGFPL 273
            G+  E YVA+ ++ +N  +  ++W   LD+S++ ASS AY+Y+S TV D+DGD   ++++GT+ G  Y+L+   G VR  FPL
Sbjct:  412 GIDIEKYVATGIVVFNLDTKHVKWTADLDLSMETASSPAYIYSSPTVVDLDGDGNMDILVGTSYGLFYILD-HRGKVREKFPL 493
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BLAST of mRNA_P-wetherbeei_contig5938.1.1 vs. uniprot
Match: A0A834WLS8_9FABA (Protein DEFECTIVE IN EXINE FORMATION 1 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WLS8_9FABA)

HSP 1 Score: 70.9 bits (172), Expect = 9.360e-11
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:   43 YVASAVLCYNAASGGLEWARRLDISVDEASSRAYVYASATVADIDGDSIYEVVIGTAAGALYVLNADTGDVRSGFPL 273
            YVA A++ +N  +  ++W   LD+S D A+ RAY+YAS TV D+DGD   ++++GT+ G  YVL+   G VR  FPL
Sbjct:  453 YVAGAIVVFNLDTKQVKWTTELDLSTDTANFRAYLYASPTVVDLDGDGNLDILVGTSYGLFYVLDHH-GKVREKFPL 528
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BLAST of mRNA_P-wetherbeei_contig5938.1.1 vs. uniprot
Match: UPI0010A56DB5 (protein DEFECTIVE IN EXINE FORMATION 1 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A56DB5)

HSP 1 Score: 70.5 bits (171), Expect = 1.270e-10
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:   43 YVASAVLCYNAASGGLEWARRLDISVDEASSRAYVYASATVADIDGDSIYEVVIGTAAGALYVLNADTGDVRSGFPL 273
            YVA A++ +N  +  ++W   LD+S D A+ RAY+YAS T+ D+DGD   ++++GT+ G  YVL+   G VR  FPL
Sbjct:  446 YVAGAIVVFNLDTKQVKWTTELDLSTDTANFRAYIYASPTLVDLDGDGNLDILVGTSYGLFYVLDHH-GKVREKFPL 521
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BLAST of mRNA_P-wetherbeei_contig5938.1.1 vs. uniprot
Match: A0A8J9WNC4_9CHLO (Probable protein DEFECTIVE IN EXINE FORMATION 1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WNC4_9CHLO)

HSP 1 Score: 70.1 bits (170), Expect = 1.710e-10
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 1 
Query:   40 NYVASAVLCYNAASGGLEWARRLDISVDEASSRAYVYASATVADIDGDSIYEVVIGTAAGALYVLNADTGDVRSGFPLRTG 282
            NYVA  ++ +N+ +  ++W + LD+S D  + +AYV AS T+ADI+GD   EV+IGT  G +YVL+ + G    G+PL+ G
Sbjct:  415 NYVAGGIVVFNSRTRTVKWQQHLDLSTDRTAFKAYVQASPTLADINGDGKLEVIIGTNMGFVYVLDCE-GRTVEGWPLQMG 494
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BLAST of mRNA_P-wetherbeei_contig5938.1.1 vs. uniprot
Match: A0A6I9U3G9_SESIN (LOW QUALITY PROTEIN: protein DEFECTIVE IN EXINE FORMATION 1 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9U3G9_SESIN)

HSP 1 Score: 70.1 bits (170), Expect = 1.710e-10
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:   25 GVKPENYVASAVLCYNAASGGLEWARRLDISVDEASSRAYVYASATVADIDGDSIYEVVIGTAAGALYVLNADTGDVRSGFPL 273
            G+    YVA  ++ +N  +  ++W  +LD+S D    RAY+Y+S TVAD+DGD  +++++GT+ G  YVL+   G  R  FPL
Sbjct:  424 GIDIGKYVAGGIVVFNLDTKQVKWTAQLDLSTDTGDFRAYIYSSPTVADLDGDGNFDILVGTSFGLFYVLD-HKGKTREKFPL 505
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BLAST of mRNA_P-wetherbeei_contig5938.1.1 vs. uniprot
Match: A0A251RY52_HELAN (Putative defective in exine formation protein (DEX1) n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251RY52_HELAN)

HSP 1 Score: 69.7 bits (169), Expect = 2.320e-10
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:   43 YVASAVLCYNAASGGLEWARRLDISVDEASSRAYVYASATVADIDGDSIYEVVIGTAAGALYVLNADTGDVRSGFPL 273
            YV   ++ +N  +  ++W   LD+S D A  RAY+YAS TV D+DGD   ++++GT+ G  YVL+   G VR  FPL
Sbjct:  431 YVGGGIVVFNLETKQVKWTAELDLSTDTAKYRAYIYASPTVVDLDGDGYLDILVGTSYGLFYVLD-HKGKVREKFPL 506
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BLAST of mRNA_P-wetherbeei_contig5938.1.1 vs. uniprot
Match: I0Z0G7_COCSC (Integrin alpha N-terminal domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z0G7_COCSC)

HSP 1 Score: 67.4 bits (163), Expect = 1.410e-9
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:   43 YVASAVLCYNAASGGLEWARRLDISVDEASSRAYVYASATVADIDGDSIYEVVIGTAAGALYVLNADTGDVRSGFPLRTG 282
            YVA  ++ +N+ +  ++W + LD+S D  + +AY+ AS T+ADI+GD   E++IGT  G +YVL+ + G    G+PL+ G
Sbjct:  363 YVAGGIVVFNSRTRTIKWQQHLDLSTDRTAFKAYIQASPTLADINGDGKLEIIIGTNMGFVYVLDCE-GRTVEGWPLQMG 441
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BLAST of mRNA_P-wetherbeei_contig5938.1.1 vs. uniprot
Match: A4S275_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S275_OSTLU)

HSP 1 Score: 56.6 bits (135), Expect = 6.630e-6
Identity = 33/93 (35.48%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:   28 VKPENYVASAVLCYNAASGGLEWARRLDISVDEASSRAYVYASATVADIDGDSIYEVVIGTAAGALYVLNADTGDVRSGFPLRTGGEIHAQAS 306
            V P+ Y A+A++  N      + +  LD S   A  +A  YA  T+ D+DGD   ++VIGT AG L+V++  +G+   G+P R G ++ AQ +
Sbjct:  308 VDPKQYAATALVVLNGEDLSTKRSIALDQSAATALFKARAYAPPTLVDVDGDGRLDIVIGTYAGVLHVVDGVSGNPLPGWPRRLG-QMEAQVT 399
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5938.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A835YVT5_9STRA4.280e-1850.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J5KSP1_ZINOF8.280e-1343.01Uncharacterized protein n=2 Tax=Zingiber officinal... [more]
A0A6I9RAM0_ELAGV5.060e-1140.96protein DEFECTIVE IN EXINE FORMATION 1 isoform X1 ... [more]
A0A834WLS8_9FABA9.360e-1145.45Protein DEFECTIVE IN EXINE FORMATION 1 n=1 Tax=Sen... [more]
UPI0010A56DB51.270e-1044.16protein DEFECTIVE IN EXINE FORMATION 1 n=1 Tax=Pro... [more]
A0A8J9WNC4_9CHLO1.710e-1043.21Probable protein DEFECTIVE IN EXINE FORMATION 1 n=... [more]
A0A6I9U3G9_SESIN1.710e-1039.76LOW QUALITY PROTEIN: protein DEFECTIVE IN EXINE FO... [more]
A0A251RY52_HELAN2.320e-1042.86Putative defective in exine formation protein (DEX... [more]
I0Z0G7_COCSC1.410e-940.00Integrin alpha N-terminal domain-containing protei... [more]
A4S275_OSTLU6.630e-635.48Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5938contigP-wetherbeei_contig5938:65..1326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog264402.Cagra.2515s0006.1.p
PFAMsFG-GAP,VCBS
Model size619
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0007275,GO:0008150,GO:0009555,GO:0009653,GO:0009987,GO:0010208,GO:0010584,GO:0010927,GO:0012505,GO:0016020,GO:0016043,GO:0022607,GO:0030198,GO:0032501,GO:0032502,GO:0032989,GO:0043062,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0046872,GO:0048229,GO:0048646,GO:0048856,GO:0048869,GO:0071840,GO:0085029
Exons4
Evalue1.86e-14
EggNOG OGs2CMU7@1|root,2QRZ6@2759|Eukaryota,37MS8@33090|Viridiplantae,3GF9D@35493|Streptophyta,3HMMC@3699|Brassicales
DescriptionDefective in exine formation
Cds size321
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186876.6937141-UTR-P-wetherbeei_contig5938:64..3601683186876.6937141-UTR-P-wetherbeei_contig5938:64..360Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5938 65..360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186876.7093937-CDS-P-wetherbeei_contig5938:360..4861683186876.7093937-CDS-P-wetherbeei_contig5938:360..486Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5938 361..486 -
1683186876.7180324-CDS-P-wetherbeei_contig5938:775..8331683186876.7180324-CDS-P-wetherbeei_contig5938:775..833Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5938 776..833 -
1683186876.729745-CDS-P-wetherbeei_contig5938:1086..11391683186876.729745-CDS-P-wetherbeei_contig5938:1086..1139Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5938 1087..1139 -
1683186876.7399445-CDS-P-wetherbeei_contig5938:1242..13261683186876.7399445-CDS-P-wetherbeei_contig5938:1242..1326Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5938 1243..1326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5938.1.1prot_P-wetherbeei_contig5938.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5938 361..1326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5938.1.1

>prot_P-wetherbeei_contig5938.1.1 ID=prot_P-wetherbeei_contig5938.1.1|Name=mRNA_P-wetherbeei_contig5938.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=107bp
YKIHPPVPGVKPENYVASAVLCYNAASGGLEWARRLDISVDEASSRAYVY
ASATVADIDGDSIYEVVIGTAAGALYVLNADTGDVRSGFPLRTGGEIHAQ
ASFGHA*
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mRNA from alignment at P-wetherbeei_contig5938:65..1326-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5938.1.1 ID=mRNA_P-wetherbeei_contig5938.1.1|Name=mRNA_P-wetherbeei_contig5938.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1262bp|location=Sequence derived from alignment at P-wetherbeei_contig5938:65..1326- (Phaeothamnion wetherbeei SAG_119_79)
TACAAGATCCACCCGCCGGTGCCGGGGGTCAAGCCGGAAAACTACGTGGC
CTCGGCAGTCCTCTGCTACAATGCGGCATCTGGGGTGAGTATGACCTGTT
TCTCTGCTGGCAGGTGGGCAAATATGCTCGCGCTGGCACCGAAGCAAGCT
ACTCTGCCTTTTCTGCATTTCTTTTTTTTCAATGCAGGGCCTTGAGTGGG
CAAGACGACTGGATATATCCGTAGACGAGGCTTCTTCGAGGTACGTTGGC
GGACGCTCAGCCCCTGTTGATAATACTGCTACCGCTGCCACCACCGCCAC
TGTTGCTACAGTTTCTGTTGCCGCCGTCGAAGCCGAAACCGTGACCACTG
CCTGTGCACTCCTTTGTTTCAACGCCTTGGAAAGCGGTCGAGTAACAGCC
AGGGAGCTTCATGGGTAGCTGAACCTAGAGCAGTGGCCATTTTTCCTTCC
TCGGTTTCTGACCTTTGCCATGGCGGCCTCTCTGGCTGCACAGGGCGTAC
GTCTACGCCTCGGCGACAGTTGCCGATATTGACGGCGATTCCATTTACGA
GGTACGTAAAGGACTTGCGGAGGTGGCGTGGCATTTCTTTCCGCTTTTTA
AGATTCAGATACACGTCTCTCCGGCGTCTCAACGTTGCTGGTTTAGCAAT
TTTGCTTGCGCCGCTGCCCATCTGCTGGAGGAGAGCGAAGGGTGTGCCTT
GAAACGAATTTTGCATTTGGCTGTTCGGTCGCCTTTGGGCCGCCGATTTG
TACCTTGTAATAATTTCCAACGCCCTGGCGTCCCCAGTGGCTCAGCCACC
GCGTGCCTCCGCTGCTTCCGCCTTTTGCGGGCGCCGACAGGTGGTGATTG
GCACGGCGGCGGGCGCGCTTTACGTGCTGAATGCAGACACAGGCGACGTG
CGAAGCGGCTTCCCGCTGCGCACTGGCGGGGAAATCCATGCGCAGGCGAG
TTTCGGGCACGCATGATAGGGTGGGAGCTGGCTGGGTGGCTTCCTTCGGT
GGAAGCCGCTTGCCGCCTCTTTTCCTGGATGCGCTGTCTTTGGATGGTGC
TGGCTCGCCGGCGCGGCTCTGACGACTCCGCTTTGATCCTTTGGCGGCGC
CGTCCTTGTGGCACTCCTTTGGGCCAGCGGGCACCGTGTTACACGGATCC
CGCTGGAGAATTTCAGAATTTCCGTATTTCGGCATGATTTTTTGCGAAGC
CGGGCATTCCACGCAAACGGTTCTTGGGGGCACCTTTGCAAGATCAGTGA
TATGGTGACGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5938:65..1326-

>mRNA_P-wetherbeei_contig5938.1.1 ID=mRNA_P-wetherbeei_contig5938.1.1|Name=mRNA_P-wetherbeei_contig5938.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig5938:65..1326- (Phaeothamnion wetherbeei SAG_119_79)
TACAAGATCCACCCGCCGGTGCCGGGGGTCAAGCCGGAAAACTACGTGGC
CTCGGCAGTCCTCTGCTACAATGCGGCATCTGGGGGCCTTGAGTGGGCAA
GACGACTGGATATATCCGTAGACGAGGCTTCTTCGAGGGCGTACGTCTAC
GCCTCGGCGACAGTTGCCGATATTGACGGCGATTCCATTTACGAGGTGGT
GATTGGCACGGCGGCGGGCGCGCTTTACGTGCTGAATGCAGACACAGGCG
ACGTGCGAAGCGGCTTCCCGCTGCGCACTGGCGGGGAAATCCATGCGCAG
GCGAGTTTCGGGCACGCATGA
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