mRNA_P-wetherbeei_contig59272.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59272.1.1
Unique NamemRNA_P-wetherbeei_contig59272.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig59272.1.1 vs. uniprot
Match: UPI001F1550D2 (ATP-binding cassette domain-containing protein n=1 Tax=unclassified Nocardioides TaxID=2615069 RepID=UPI001F1550D2)

HSP 1 Score: 260 bits (665), Expect = 1.290e-84
Identity = 132/162 (81.48%), Postives = 148/162 (91.36%), Query Frame = 1
Query:    7 SLTGQFASLDEDLTGLENLTLLSRLWGYRGPEARRRAGDLLTAFDLSEAATRQVKHYSGGMRRRIDIAASLVVTPDLIFLDEPTTGLDPRSRNQVWDIVRTLVAAGTTVLLTTQYLEEADQLADRIAVIDRGKVIAEGTTGELKASVGAGSLHVRLSDASCR 492
            +LTGQFASLDEDLTGLENLTLL+R++GYR   ARRRA +LL AFDL++AA RQVK YSGGMRRRID+A SLVV PDLIFLDEPTTGLDPRSRNQVW+IVR LV AGTTVLLTTQYLEEADQLADRIAVID G+VIAEGT+GELKASVG+G+LHVR++D + R
Sbjct:   81 ALTGQFASLDEDLTGLENLTLLARMYGYRAAAARRRAAELLEAFDLADAAKRQVKAYSGGMRRRIDVAGSLVVRPDLIFLDEPTTGLDPRSRNQVWEIVRALVGAGTTVLLTTQYLEEADQLADRIAVIDHGRVIAEGTSGELKASVGSGALHVRVADPATR 242          
BLAST of mRNA_P-wetherbeei_contig59272.1.1 vs. uniprot
Match: A0A8A4Z928_9MICO (ATP-binding cassette domain-containing protein n=1 Tax=Pengzhenrongella sicca TaxID=2819238 RepID=A0A8A4Z928_9MICO)

HSP 1 Score: 260 bits (664), Expect = 2.200e-84
Identity = 130/165 (78.79%), Postives = 148/165 (89.70%), Query Frame = 1
Query:    1 RGSLTGQFASLDEDLTGLENLTLLSRLWGYRGPEARRRAGDLLTAFDLSEAATRQVKHYSGGMRRRIDIAASLVVTPDLIFLDEPTTGLDPRSRNQVWDIVRTLVAAGTTVLLTTQYLEEADQLADRIAVIDRGKVIAEGTTGELKASVGAGSLHVRLSDASCRP 495
            R SLTGQFAS+DEDLTG ENL LLSRLWGY  P AR+RAGDLL AF L++A  RQVK+YSGGMRRR+DIAAS+VVTPDLIFLDEPT+GLDPRSRNQVW+I+R +VA GTTVLLTTQYL+EADQLADRIAV+D G+VIAEGT+ ELKASVG+G+LHVRL D + RP
Sbjct:   82 RVSLTGQFASVDEDLTGFENLVLLSRLWGYSRPAARQRAGDLLDAFGLADARDRQVKNYSGGMRRRLDIAASIVVTPDLIFLDEPTSGLDPRSRNQVWEIIRAMVAGGTTVLLTTQYLDEADQLADRIAVVDHGRVIAEGTSSELKASVGSGALHVRLLDPAQRP 246          
BLAST of mRNA_P-wetherbeei_contig59272.1.1 vs. uniprot
Match: A0A7J9WK09_9ACTN (ATP-binding cassette domain-containing protein n=1 Tax=Nitriliruptorales bacterium TaxID=2497630 RepID=A0A7J9WK09_9ACTN)

HSP 1 Score: 260 bits (665), Expect = 2.700e-84
Identity = 133/165 (80.61%), Postives = 147/165 (89.09%), Query Frame = 1
Query:    1 RGSLTGQFASLDEDLTGLENLTLLSRLWGYRGPEARRRAGDLLTAFDLSEAATRQVKHYSGGMRRRIDIAASLVVTPDLIFLDEPTTGLDPRSRNQVWDIVRTLVAAGTTVLLTTQYLEEADQLADRIAVIDRGKVIAEGTTGELKASVGAGSLHVRLSDASCRP 495
            R S+TGQFAS+DEDLTG ENL LL RLWGYR P+AR RAG+LL AF L++A+ RQVK YSGGMRRRIDIAAS+VVTP+LIFLDEPTTGLDPRSRN VWDIVR LVA+GTTVLLTTQYL+EADQLADRIAVIDRGKVIAEGT+ +LKASVG+G LHVRL D   RP
Sbjct:   94 RVSMTGQFASVDEDLTGFENLLLLCRLWGYRRPDARARAGELLDAFGLADASDRQVKKYSGGMRRRIDIAASIVVTPELIFLDEPTTGLDPRSRNYVWDIVRALVASGTTVLLTTQYLDEADQLADRIAVIDRGKVIAEGTSSQLKASVGSGVLHVRLLDPDQRP 258          
BLAST of mRNA_P-wetherbeei_contig59272.1.1 vs. uniprot
Match: A0A6N9YKG1_9ACTN (ATP-binding cassette domain-containing protein n=2 Tax=Phytoactinopolyspora alkaliphila TaxID=1783498 RepID=A0A6N9YKG1_9ACTN)

HSP 1 Score: 258 bits (660), Expect = 8.610e-84
Identity = 131/166 (78.92%), Postives = 148/166 (89.16%), Query Frame = 1
Query:    1 RGSLTGQFASLDEDLTGLENLTLLSRLWGYRGPEARRRAGDLLTAFDLSEAATRQVKHYSGGMRRRIDIAASLVVTPDLIFLDEPTTGLDPRSRNQVWDIVRTLVAAGTTVLLTTQYLEEADQLADRIAVIDRGKVIAEGTTGELKASVGAGSLHVRLSDASCRPA 498
            R SLTGQFAS+DEDLTG ENL LLSRL GY  P++R RA DLL AF L++AA RQVK YSGGMRRRID+AAS+V TPD++FLDEPTTGLDPRSRNQVWDIVR LVA+GTTVLLTTQYL+EADQLADRIAVID GKVIAEGT+G+LKASVG+G++H+RL DA  RPA
Sbjct:   83 RVSLTGQFASVDEDLTGFENLVLLSRLLGYSKPQSRARATDLLDAFGLADAAERQVKKYSGGMRRRIDLAASIVATPDVLFLDEPTTGLDPRSRNQVWDIVRVLVASGTTVLLTTQYLDEADQLADRIAVIDHGKVIAEGTSGQLKASVGSGAVHIRLRDAGTRPA 248          
BLAST of mRNA_P-wetherbeei_contig59272.1.1 vs. uniprot
Match: A0A541B1W4_9NOCA (ATP-binding cassette domain-containing protein n=1 Tax=Rhodococcus spelaei TaxID=2546320 RepID=A0A541B1W4_9NOCA)

HSP 1 Score: 258 bits (660), Expect = 9.160e-84
Identity = 130/164 (79.27%), Postives = 149/164 (90.85%), Query Frame = 1
Query:    7 SLTGQFASLDEDLTGLENLTLLSRLWGYRGPEARRRAGDLLTAFDLSEAATRQVKHYSGGMRRRIDIAASLVVTPDLIFLDEPTTGLDPRSRNQVWDIVRTLVAAGTTVLLTTQYLEEADQLADRIAVIDRGKVIAEGTTGELKASVGAGSLHVRLSDASCRPA 498
            SLTGQFASLDEDLTG ENL LL+RL+G+  P AR RA  LL AFDLSEA +RQVK++SGGMRRR+DIAAS++VTP+LIFLDEPTTGLDPRSRNQVW+IVR LVA GTTVLLTTQYL+EADQLADR+AVID G+VIAEGTTGELKASVG+G+LHVR++D + RPA
Sbjct:   84 SLTGQFASLDEDLTGTENLVLLARLYGFSRPAARSRAEQLLAAFDLSEAGSRQVKNFSGGMRRRLDIAASIIVTPELIFLDEPTTGLDPRSRNQVWEIVRALVAGGTTVLLTTQYLDEADQLADRVAVIDHGRVIAEGTTGELKASVGSGALHVRVADPAKRPA 247          
BLAST of mRNA_P-wetherbeei_contig59272.1.1 vs. uniprot
Match: A0A1Q9U4Z4_9NOCA (Daunorubicin/doxorubicin resistance ABC transporter ATP-binding protein DrrA n=2 Tax=unclassified Rhodococcus TaxID=192944 RepID=A0A1Q9U4Z4_9NOCA)

HSP 1 Score: 258 bits (659), Expect = 1.080e-83
Identity = 134/164 (81.71%), Postives = 146/164 (89.02%), Query Frame = 1
Query:    7 SLTGQFASLDEDLTGLENLTLLSRLWGYRGPEARRRAGDLLTAFDLSEAATRQVKHYSGGMRRRIDIAASLVVTPDLIFLDEPTTGLDPRSRNQVWDIVRTLVAAGTTVLLTTQYLEEADQLADRIAVIDRGKVIAEGTTGELKASVGAGSLHVRLSDASCRPA 498
            SLTGQFASLDEDLTG ENL LL+RL+GY  P AR RA +LLTAF ++EA  RQVK YSGGMRRRIDIAAS++VTP+LIFLDEPTTGLDPRSRNQVWDIVR LV  GTTVLLTTQYL+EADQLA RIAVIDRGKVIAEGTTGELKASVG+GSLHVR+ +AS R A
Sbjct:   82 SLTGQFASLDEDLTGTENLILLARLYGYSRPAARSRADELLTAFGIAEAGNRQVKTYSGGMRRRIDIAASIIVTPELIFLDEPTTGLDPRSRNQVWDIVRALVDGGTTVLLTTQYLDEADQLAGRIAVIDRGKVIAEGTTGELKASVGSGSLHVRVVEASMRAA 245          
BLAST of mRNA_P-wetherbeei_contig59272.1.1 vs. uniprot
Match: A0A0A0BKJ7_9CELL (Caunorubicin/doxorubicin resistance ATP-binding protein n=1 Tax=Cellulomonas carbonis T26 TaxID=947969 RepID=A0A0A0BKJ7_9CELL)

HSP 1 Score: 256 bits (654), Expect = 6.170e-83
Identity = 129/156 (82.69%), Postives = 144/156 (92.31%), Query Frame = 1
Query:    7 SLTGQFASLDEDLTGLENLTLLSRLWGYRGPEARRRAGDLLTAFDLSEAATRQVKHYSGGMRRRIDIAASLVVTPDLIFLDEPTTGLDPRSRNQVWDIVRTLVAAGTTVLLTTQYLEEADQLADRIAVIDRGKVIAEGTTGELKASVGAGSLHVRL 474
            S+TGQFAS+DEDLTG ENL LLSRLWG+  P AR RA +LL AF L++AA RQVK +SGGMRRRIDIAAS++VTPDLIFLDEPTTGLDPRSRNQVWDIVR LVAAGTTVLLTTQYL+EADQLA+RIAVIDRGKVIAEGT+G+LKASVG+G+LHVRL
Sbjct:   81 SMTGQFASVDEDLTGRENLVLLSRLWGFTRPAARARADELLAAFGLADAADRQVKKFSGGMRRRIDIAASIIVTPDLIFLDEPTTGLDPRSRNQVWDIVRELVAAGTTVLLTTQYLDEADQLAERIAVIDRGKVIAEGTSGQLKASVGSGALHVRL 236          
BLAST of mRNA_P-wetherbeei_contig59272.1.1 vs. uniprot
Match: UPI000934FE46 (ATP-binding cassette domain-containing protein n=1 Tax=Rhodococcus yunnanensis TaxID=278209 RepID=UPI000934FE46)

HSP 1 Score: 256 bits (654), Expect = 6.570e-83
Identity = 131/164 (79.88%), Postives = 147/164 (89.63%), Query Frame = 1
Query:    7 SLTGQFASLDEDLTGLENLTLLSRLWGYRGPEARRRAGDLLTAFDLSEAATRQVKHYSGGMRRRIDIAASLVVTPDLIFLDEPTTGLDPRSRNQVWDIVRTLVAAGTTVLLTTQYLEEADQLADRIAVIDRGKVIAEGTTGELKASVGAGSLHVRLSDASCRPA 498
            SLTGQFASLDEDLTG+ENL LL+RL+GY  P AR RA +LL AF +++A +RQVK YSGGMRRR+DIAAS++VTP+LIFLDEPTTGLDPRSRNQVWDIVR LVA GTTVLLTTQYL+EADQLA RIAVIDRGKVIAEGTTGELKASVG+GSLHVR+ D + R A
Sbjct:   82 SLTGQFASLDEDLTGIENLVLLARLYGYSRPAARSRAEELLAAFGIADAGSRQVKTYSGGMRRRVDIAASIIVTPELIFLDEPTTGLDPRSRNQVWDIVRALVAGGTTVLLTTQYLDEADQLAGRIAVIDRGKVIAEGTTGELKASVGSGSLHVRVLDPARRSA 245          
BLAST of mRNA_P-wetherbeei_contig59272.1.1 vs. uniprot
Match: UPI001E58CA53 (ATP-binding cassette domain-containing protein n=1 Tax=Aeromicrobium sp. Leaf350 TaxID=2876565 RepID=UPI001E58CA53)

HSP 1 Score: 256 bits (653), Expect = 8.480e-83
Identity = 129/160 (80.62%), Postives = 144/160 (90.00%), Query Frame = 1
Query:    1 RGSLTGQFASLDEDLTGLENLTLLSRLWGYRGPEARRRAGDLLTAFDLSEAATRQVKHYSGGMRRRIDIAASLVVTPDLIFLDEPTTGLDPRSRNQVWDIVRTLVAAGTTVLLTTQYLEEADQLADRIAVIDRGKVIAEGTTGELKASVGAGSLHVRLSD 480
            R ++TGQFASLDEDLTGLENL +L++L+GYRG  AR RA  LL AFDL+EA T+QVK YSGGMRRRIDIA S+VV PDL+FLDEPTTGLDPRSRNQVWDIVR LV AGTTVLLTTQYL+EADQLADRIAVIDRGKVIAEGTTGELKASVG G+L +R++D
Sbjct:   79 RVAMTGQFASLDEDLTGLENLVMLAKLYGYRGTAARDRADQLLDAFDLTEAGTKQVKSYSGGMRRRIDIAGSIVVRPDLMFLDEPTTGLDPRSRNQVWDIVRALVGAGTTVLLTTQYLDEADQLADRIAVIDRGKVIAEGTTGELKASVGTGALRIRVAD 238          
BLAST of mRNA_P-wetherbeei_contig59272.1.1 vs. uniprot
Match: A0A164LKZ2_9NOCA (Caunorubicin/doxorubicin resistance ATP-binding protein n=9 Tax=Nocardiaceae TaxID=85025 RepID=A0A164LKZ2_9NOCA)

HSP 1 Score: 256 bits (653), Expect = 8.750e-83
Identity = 131/158 (82.91%), Postives = 143/158 (90.51%), Query Frame = 1
Query:    7 SLTGQFASLDEDLTGLENLTLLSRLWGYRGPEARRRAGDLLTAFDLSEAATRQVKHYSGGMRRRIDIAASLVVTPDLIFLDEPTTGLDPRSRNQVWDIVRTLVAAGTTVLLTTQYLEEADQLADRIAVIDRGKVIAEGTTGELKASVGAGSLHVRLSD 480
            SLTGQFASLDEDLTG ENL LL+RL+GY  P AR RA +LL+AF +++A  RQVK YSGGMRRRIDIAAS++VTP+LIFLDEPTTGLDPRSRNQVWDIVR LVA GTTVLLTTQYL+EADQLA RIAVIDRGKVIAEGTTGELKASVGAGSLHVR+ D
Sbjct:   82 SLTGQFASLDEDLTGTENLVLLARLYGYSRPSARSRADELLSAFGIADAGGRQVKTYSGGMRRRIDIAASIIVTPELIFLDEPTTGLDPRSRNQVWDIVRALVAGGTTVLLTTQYLDEADQLAGRIAVIDRGKVIAEGTTGELKASVGAGSLHVRVVD 239          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59272.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F1550D21.290e-8481.48ATP-binding cassette domain-containing protein n=1... [more]
A0A8A4Z928_9MICO2.200e-8478.79ATP-binding cassette domain-containing protein n=1... [more]
A0A7J9WK09_9ACTN2.700e-8480.61ATP-binding cassette domain-containing protein n=1... [more]
A0A6N9YKG1_9ACTN8.610e-8478.92ATP-binding cassette domain-containing protein n=2... [more]
A0A541B1W4_9NOCA9.160e-8479.27ATP-binding cassette domain-containing protein n=1... [more]
A0A1Q9U4Z4_9NOCA1.080e-8381.71Daunorubicin/doxorubicin resistance ABC transporte... [more]
A0A0A0BKJ7_9CELL6.170e-8382.69Caunorubicin/doxorubicin resistance ATP-binding pr... [more]
UPI000934FE466.570e-8379.88ATP-binding cassette domain-containing protein n=1... [more]
UPI001E58CA538.480e-8380.63ATP-binding cassette domain-containing protein n=1... [more]
A0A164LKZ2_9NOCA8.750e-8382.91Caunorubicin/doxorubicin resistance ATP-binding pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59272contigP-wetherbeei_contig59272:3..500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1229203.KI301992_gene2746
Preferred namedrrA
PFAMsABC_tran,DUF4162
Model size498
Max annot lvl201174|Actinobacteria
KEGG koko:K01990
KEGG TC3.A.1
KEGG ModuleM00254
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.02e-84
EggNOG OGsCOG1131@1|root,COG1131@2|Bacteria,2GIY8@201174|Actinobacteria,3UW6J@52018|unclassified Actinobacteria (class)
DescriptionATPases associated with a variety of cellular activities
Cds size498
COG categoryV
BRITEko00000,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186875.9414635-CDS-P-wetherbeei_contig59272:2..5001683186875.9414635-CDS-P-wetherbeei_contig59272:2..500Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59272 3..500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59272.1.1prot_P-wetherbeei_contig59272.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59272 3..500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59272.1.1

>prot_P-wetherbeei_contig59272.1.1 ID=prot_P-wetherbeei_contig59272.1.1|Name=mRNA_P-wetherbeei_contig59272.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
RGSLTGQFASLDEDLTGLENLTLLSRLWGYRGPEARRRAGDLLTAFDLSE
AATRQVKHYSGGMRRRIDIAASLVVTPDLIFLDEPTTGLDPRSRNQVWDI
VRTLVAAGTTVLLTTQYLEEADQLADRIAVIDRGKVIAEGTTGELKASVG
AGSLHVRLSDASCRPA
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mRNA from alignment at P-wetherbeei_contig59272:3..500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59272.1.1 ID=mRNA_P-wetherbeei_contig59272.1.1|Name=mRNA_P-wetherbeei_contig59272.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig59272:3..500+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGGCAGCCTCACCGGCCAGTTCGCCTCCCTCGACGAGGACCTCACCGG GCTCGAGAACCTCACCCTGCTCTCCCGTCTCTGGGGCTATCGCGGCCCCG AGGCCCGCCGCCGCGCCGGCGATCTCCTCACCGCCTTCGACCTCTCCGAG GCAGCCACACGCCAGGTCAAGCACTACTCGGGCGGCATGCGCCGCCGGAT CGACATCGCCGCCAGCCTCGTCGTCACCCCCGACCTCATCTTCCTCGACG AGCCCACCACCGGCCTCGACCCGCGCAGCCGCAACCAGGTCTGGGACATC GTGCGCACCCTCGTCGCGGCGGGCACTACCGTCCTCCTCACCACCCAGTA CCTGGAGGAGGCCGACCAGCTTGCCGACCGCATCGCCGTCATCGATCGCG GCAAAGTCATCGCCGAGGGCACCACCGGTGAACTCAAGGCCTCCGTGGGG GCCGGCTCCCTCCACGTCCGCCTGAGCGACGCCAGCTGCCGCCCGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59272:3..500+

>mRNA_P-wetherbeei_contig59272.1.1 ID=mRNA_P-wetherbeei_contig59272.1.1|Name=mRNA_P-wetherbeei_contig59272.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig59272:3..500+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGGCAGCCTCACCGGCCAGTTCGCCTCCCTCGACGAGGACCTCACCGG
GCTCGAGAACCTCACCCTGCTCTCCCGTCTCTGGGGCTATCGCGGCCCCG
AGGCCCGCCGCCGCGCCGGCGATCTCCTCACCGCCTTCGACCTCTCCGAG
GCAGCCACACGCCAGGTCAAGCACTACTCGGGCGGCATGCGCCGCCGGAT
CGACATCGCCGCCAGCCTCGTCGTCACCCCCGACCTCATCTTCCTCGACG
AGCCCACCACCGGCCTCGACCCGCGCAGCCGCAACCAGGTCTGGGACATC
GTGCGCACCCTCGTCGCGGCGGGCACTACCGTCCTCCTCACCACCCAGTA
CCTGGAGGAGGCCGACCAGCTTGCCGACCGCATCGCCGTCATCGATCGCG
GCAAAGTCATCGCCGAGGGCACCACCGGTGAACTCAAGGCCTCCGTGGGG
GCCGGCTCCCTCCACGTCCGCCTGAGCGACGCCAGCTGCCGCCCGGCC
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