mRNA_P-wetherbeei_contig5927.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5927.2.1
Unique NamemRNA_P-wetherbeei_contig5927.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: A0A835Z8B1_9STRA (DNA photolyase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B1_9STRA)

HSP 1 Score: 177 bits (449), Expect = 6.830e-51
Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 1
Query:    4 PRRFPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
            P  +PGGET ALAR++ H+AR +W+A+FEKP TSPNSLEPSTTVLSPY+KFGCL +R F+H +A +  A      H+ PPVSLHGQLLWRE FY+CGH +P+F RMEGNPICRQ+ W
Sbjct:  203 PLLYPGGETAALARMQLHLARKQWIAKFEKPKTSPNSLEPSTTVLSPYLKFGCLSSRLFYHKLAEIYKASPG---HAKPPVSLHGQLLWREFFYMCGHTVPHFDRMEGNPICRQVPW 316          
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: UPI001885A408 (LOW QUALITY PROTEIN: cryptochrome-2-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001885A408)

HSP 1 Score: 173 bits (439), Expect = 2.760e-49
Identity = 79/114 (69.30%), Postives = 89/114 (78.07%), Query Frame = 1
Query:   13 FPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
            +PGGETE LARLERH+AR  W   F+KP T+PNSL PSTTVLSPY+KFGC+ AR F+H +AAV  A   GG H+ PPVSLHGQLLWRE FY  G + PNF RMEGNPICRQI W
Sbjct:  208 YPGGETEGLARLERHLARAAWCCRFQKPQTAPNSLAPSTTVLSPYLKFGCVSARLFYHRLAAVYRA---GGTHTQPPVSLHGQLLWREFFYTVGASTPNFDRMEGNPICRQIPW 318          
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: A0A8J7NUU2_ATRSP (CRY2 protein (Fragment) n=1 Tax=Atractosteus spatula TaxID=7917 RepID=A0A8J7NUU2_ATRSP)

HSP 1 Score: 170 bits (430), Expect = 4.910e-48
Identity = 78/118 (66.10%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    1 GPRRFPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
            GP  +PGGETEAL+RL+RHM R  WV  F+KPNT PN+L PSTTVLSPY+KFGCL AR FW  +  V      G +HS PPVSLHGQLLWRE FY  G  IPNF RMEGNP+C QI W
Sbjct:  206 GPELYPGGETEALSRLDRHMQRTAWVCGFQKPNTEPNALSPSTTVLSPYLKFGCLSARTFWWRLTDVY----RGRKHSEPPVSLHGQLLWREFFYTAGLGIPNFDRMEGNPVCVQIDW 319          
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: UPI001CF95696 (cryptochrome-2-like n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CF95696)

HSP 1 Score: 169 bits (429), Expect = 5.860e-48
Identity = 78/118 (66.10%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    1 GPRRFPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
            GP  +PGGETEAL RLE +M R  WV  F+KP TSPNSL+PSTTVLSPYVKFGCL AR FW      L+    G +HS PPVSLHGQLLWRE FY+ G AIPNF RM GNP+C Q+ W
Sbjct:  206 GPHLYPGGETEALRRLEHYMQRTSWVCNFQKPETSPNSLDPSTTVLSPYVKFGCLSARTFWWR----LSETYQGRKHSQPPVSLHGQLLWREFFYVIGAAIPNFDRMVGNPVCTQVDW 319          
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: UPI00035991FC (cryptochrome-1 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00035991FC)

HSP 1 Score: 168 bits (426), Expect = 1.580e-47
Identity = 77/118 (65.25%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    1 GPRRFPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
            GP  FPGGETEAL R+ERH+ +  W+  FEKP TSPNSL PSTTVLSPY+KFGCL  R F+H +  V     SG +HS PPVSLHGQLLWRE FY  G   PNF RM+GNP+CRQI W
Sbjct:  209 GPLLFPGGETEALDRMERHLKKINWICNFEKPKTSPNSLSPSTTVLSPYLKFGCLSPRLFYHRLQQVY----SGKKHSQPPVSLHGQLLWREFFYTVGAVTPNFDRMKGNPVCRQIPW 322          
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: A0A4D9EJ17_9SAUR (Suppressor of cytokine signaling 4 n=1 Tax=Platysternon megacephalum TaxID=55544 RepID=A0A4D9EJ17_9SAUR)

HSP 1 Score: 165 bits (417), Expect = 3.010e-47
Identity = 73/118 (61.86%), Postives = 85/118 (72.03%), Query Frame = 1
Query:    1 GPRRFPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
            GPR +PGGE+EAL RL+ HM R  WV  F+KP T PNSL PSTTVLSPY+KFGCL  R FW  +A +      G +H+ PPVSLHGQLLWRE FY  G  IPNF +MEGNP+C Q+ W
Sbjct:  206 GPRLYPGGESEALCRLDLHMNRMAWVCNFQKPQTEPNSLNPSTTVLSPYIKFGCLSVRTFWWRLAEIY----QGRKHTNPPVSLHGQLLWREFFYTAGAGIPNFNKMEGNPVCVQVDW 319          
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: A0A8C5R1D8_9ANUR (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5R1D8_9ANUR)

HSP 1 Score: 167 bits (424), Expect = 3.510e-47
Identity = 78/118 (66.10%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    1 GPRRFPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
            GP  +PGGE+EAL RL+ HM R  WV  F+KP+T PNSL PSTTVLSPYVKFGCL AR FW  +A V      G  HSAPPVSLHGQLLWRE FY  G  IPNF RMEGNP+C Q+ W
Sbjct:  206 GPHLYPGGESEALQRLDLHMKRTVWVCNFKKPDTEPNSLSPSTTVLSPYVKFGCLSARTFWWRLAEVY----RGKPHSAPPVSLHGQLLWREFFYTAGAGIPNFSRMEGNPVCVQVDW 319          
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: A0A0S7FGT7_9TELE (CRY1 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7FGT7_9TELE)

HSP 1 Score: 162 bits (410), Expect = 4.300e-47
Identity = 74/118 (62.71%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    1 GPRRFPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
            G   FPGGE EAL RL+ HM R  WV  FEKP TSPNSL PSTTVLSPY+ FGCL AR FW  +  V      G +HSAPPVSLHGQLLWRE FY C   IPNF +M+ NP+C Q+ W
Sbjct:  149 GEELFPGGEQEALRRLDEHMKRTGWVCSFEKPQTSPNSLSPSTTVLSPYITFGCLSARTFWWRLTEVY----QGKKHSAPPVSLHGQLLWREFFYTCSVGIPNFNKMKQNPVCTQVDW 262          
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: UPI0009E5366C (cryptochrome-1-like n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5366C)

HSP 1 Score: 167 bits (423), Expect = 5.140e-47
Identity = 75/114 (65.79%), Postives = 88/114 (77.19%), Query Frame = 1
Query:   13 FPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
            FPGGETEAL RL+ HM +  WV +FEKPNTSPNSL+PSTTVLSPYV FGCL AR F+H ++ V    S   +HS+PPVSLHGQLLWRE F+   +A PNF RMEGNP+C Q+ W
Sbjct:  215 FPGGETEALRRLDEHMEKEDWVCKFEKPNTSPNSLQPSTTVLSPYVMFGCLSARLFYHRLSEVY---SRAKKHSSPPVSLHGQLLWREFFFTAAYATPNFNRMEGNPVCLQVPW 325          
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: F2U6L6_SALR5 (DNA photolyase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U6L6_SALR5)

HSP 1 Score: 167 bits (423), Expect = 5.380e-47
Identity = 76/115 (66.09%), Postives = 88/115 (76.52%), Query Frame = 1
Query:   10 RFPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
            RFPGGETEAL R+ RH+ R  W+A FEKP TSPN+LEPSTT LSPY+KFGCL  R F+H +A V A       H+ PPVSLHGQLLWRE F++CG+A+ NF RMEGN ICRQI W
Sbjct:  216 RFPGGETEALERMRRHLQRKAWIAHFEKPKTSPNTLEPSTTGLSPYLKFGCLSPRLFYHELARVYAEYRD---HAKPPVSLHGQLLWREFFHMCGYAVKNFDRMEGNRICRQIDW 327          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8B1_9STRA6.830e-5165.81DNA photolyase n=1 Tax=Tribonema minus TaxID=30337... [more]
UPI001885A4082.760e-4969.30LOW QUALITY PROTEIN: cryptochrome-2-like n=1 Tax=P... [more]
A0A8J7NUU2_ATRSP4.910e-4866.10CRY2 protein (Fragment) n=1 Tax=Atractosteus spatu... [more]
UPI001CF956965.860e-4866.10cryptochrome-2-like n=1 Tax=Protopterus annectens ... [more]
UPI00035991FC1.580e-4765.25cryptochrome-1 n=1 Tax=Aplysia californica TaxID=6... [more]
A0A4D9EJ17_9SAUR3.010e-4761.86Suppressor of cytokine signaling 4 n=1 Tax=Platyst... [more]
A0A8C5R1D8_9ANUR3.510e-4766.10Photolyase/cryptochrome alpha/beta domain-containi... [more]
A0A0S7FGT7_9TELE4.300e-4762.71CRY1 (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
UPI0009E5366C5.140e-4765.79cryptochrome-1-like n=2 Tax=Orbicella faveolata Ta... [more]
F2U6L6_SALR55.380e-4766.09DNA photolyase n=1 Tax=Salpingoeca rosetta (strain... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5927contigP-wetherbeei_contig5927:2667..3629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog6500.XP_005091065.1
PFAMsDNA_photolyase,FAD_binding_7
Model size354
Max annot lvl33208|Metazoa
KEGG koko:K02295
KEGG Pathwayko04710,map04710
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003904,GO:0003913,GO:0016829,GO:0016830,GO:0140097
Exons3
Evalue2.59e-48
EggNOG OGsCOG0415@1|root,KOG0133@2759|Eukaryota,38BKX@33154|Opisthokonta,3B995@33208|Metazoa,3CXCK@33213|Bilateria
DescriptionFAD binding domain of DNA photolyase
Cds size354
COG categoryLT
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186875.8940105-CDS-P-wetherbeei_contig5927:2666..27741683186875.8940105-CDS-P-wetherbeei_contig5927:2666..2774Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5927 2667..2774 +
1683186875.9039009-CDS-P-wetherbeei_contig5927:3088..32971683186875.9039009-CDS-P-wetherbeei_contig5927:3088..3297Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5927 3089..3297 +
1683186875.9137716-CDS-P-wetherbeei_contig5927:3592..36291683186875.9137716-CDS-P-wetherbeei_contig5927:3592..3629Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5927 3593..3629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5927.2.1prot_P-wetherbeei_contig5927.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5927 2667..3629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5927.2.1

>prot_P-wetherbeei_contig5927.2.1 ID=prot_P-wetherbeei_contig5927.2.1|Name=mRNA_P-wetherbeei_contig5927.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
GPRRFPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYV
KFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHA
IPNFGRMEGNPICRQITW
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mRNA from alignment at P-wetherbeei_contig5927:2667..3629+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5927.2.1 ID=mRNA_P-wetherbeei_contig5927.2.1|Name=mRNA_P-wetherbeei_contig5927.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=963bp|location=Sequence derived from alignment at P-wetherbeei_contig5927:2667..3629+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCCGCGACGGTTCCCGGGCGGGGAGACGGAGGCACTGGCGCGGCTTGA GCGGCACATGGCGCGTGGGCGATGGGTGGCCGAGTTTGAGAAGCCCAACA CATCCCCAGTAAGTGATTTAACACGGTGCGATGGGGCGTTGAGTCACTTG GAGTGCCACTAGTAGACGAGCTTCGTCTTTGAGCGCCGTTTAAATCAGCT GTTTGAAGGGAGGTTATCAAGCTGCTGCGGCGACCGCAGCGCTGCAGGCA GGAACGGTTTCGCCCAGCATGCGGGCCCTTCGGACCCAGGCGGAAGGTTG AAGAAAGGCCTTGGAAGTTGCTCCTCGCCTTCAGTTAGCGGCTGCGTCCG GCGTGTCTCTTGCCCCTACCCTGTCTTGACACTTCAATTTTCCGTCTCCC CTCCCTGGGCTGTCCATGGCAGAACTCCCTGGAGCCGAGCACGACGGTAC TGAGCCCCTACGTCAAGTTCGGCTGCCTGGGCGCGCGCCGCTTCTGGCAC GCCGTGGCGGCAGTCCTGGCGGCGCAAAGCAGCGGCGGCCGCCACTCGGC GCCGCCTGTGTCGCTCCATGGGCAGCTGCTGTGGCGGGAGCACTTCTACC TCTGCGGGCACGCCATCCCCAACTTTGGCAGGTGCACGAGTGGGAGTGGG GGAAGTGAGAAAGAGGACGACCTGTTGGTTCCGGTTGATAGGGGTGGGAG AATGGAGGGTTCCGATCCTGCAGTACTGTTCTCCAGTAGGCAGCGCGAGG CAAGTTCCCCCCCTTTATTTCGTGTTCCTGCATTTCCTGTGATTGTCTTG TGAAGTGGTGGGTGCTCCAAAGTTCTGCTTTTCCGTTTGCATGATCCCTG CCGTCCACAAAGATCATTCATACCCGTGACGTTCCGTGAAACCATCCGAT TTATTTGCGTTTTCCACCACGCGCAGGATGGAAGGGAATCCGATCTGCAG GCAGATCACGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5927:2667..3629+

>mRNA_P-wetherbeei_contig5927.2.1 ID=mRNA_P-wetherbeei_contig5927.2.1|Name=mRNA_P-wetherbeei_contig5927.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig5927:2667..3629+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCCGCGACGGTTCCCGGGCGGGGAGACGGAGGCACTGGCGCGGCTTGA
GCGGCACATGGCGCGTGGGCGATGGGTGGCCGAGTTTGAGAAGCCCAACA
CATCCCCAAACTCCCTGGAGCCGAGCACGACGGTACTGAGCCCCTACGTC
AAGTTCGGCTGCCTGGGCGCGCGCCGCTTCTGGCACGCCGTGGCGGCAGT
CCTGGCGGCGCAAAGCAGCGGCGGCCGCCACTCGGCGCCGCCTGTGTCGC
TCCATGGGCAGCTGCTGTGGCGGGAGCACTTCTACCTCTGCGGGCACGCC
ATCCCCAACTTTGGCAGGATGGAAGGGAATCCGATCTGCAGGCAGATCAC
GTGG
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