mRNA_P-wetherbeei_contig5927.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: A0A835Z8B1_9STRA (DNA photolyase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B1_9STRA) HSP 1 Score: 177 bits (449), Expect = 6.830e-51 Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 1
Query: 4 PRRFPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
P +PGGET ALAR++ H+AR +W+A+FEKP TSPNSLEPSTTVLSPY+KFGCL +R F+H +A + A H+ PPVSLHGQLLWRE FY+CGH +P+F RMEGNPICRQ+ W
Sbjct: 203 PLLYPGGETAALARMQLHLARKQWIAKFEKPKTSPNSLEPSTTVLSPYLKFGCLSSRLFYHKLAEIYKASPG---HAKPPVSLHGQLLWREFFYMCGHTVPHFDRMEGNPICRQVPW 316
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: UPI001885A408 (LOW QUALITY PROTEIN: cryptochrome-2-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001885A408) HSP 1 Score: 173 bits (439), Expect = 2.760e-49 Identity = 79/114 (69.30%), Postives = 89/114 (78.07%), Query Frame = 1
Query: 13 FPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
+PGGETE LARLERH+AR W F+KP T+PNSL PSTTVLSPY+KFGC+ AR F+H +AAV A GG H+ PPVSLHGQLLWRE FY G + PNF RMEGNPICRQI W
Sbjct: 208 YPGGETEGLARLERHLARAAWCCRFQKPQTAPNSLAPSTTVLSPYLKFGCVSARLFYHRLAAVYRA---GGTHTQPPVSLHGQLLWREFFYTVGASTPNFDRMEGNPICRQIPW 318
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: A0A8J7NUU2_ATRSP (CRY2 protein (Fragment) n=1 Tax=Atractosteus spatula TaxID=7917 RepID=A0A8J7NUU2_ATRSP) HSP 1 Score: 170 bits (430), Expect = 4.910e-48 Identity = 78/118 (66.10%), Postives = 87/118 (73.73%), Query Frame = 1
Query: 1 GPRRFPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
GP +PGGETEAL+RL+RHM R WV F+KPNT PN+L PSTTVLSPY+KFGCL AR FW + V G +HS PPVSLHGQLLWRE FY G IPNF RMEGNP+C QI W
Sbjct: 206 GPELYPGGETEALSRLDRHMQRTAWVCGFQKPNTEPNALSPSTTVLSPYLKFGCLSARTFWWRLTDVY----RGRKHSEPPVSLHGQLLWREFFYTAGLGIPNFDRMEGNPVCVQIDW 319
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: UPI001CF95696 (cryptochrome-2-like n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CF95696) HSP 1 Score: 169 bits (429), Expect = 5.860e-48 Identity = 78/118 (66.10%), Postives = 87/118 (73.73%), Query Frame = 1
Query: 1 GPRRFPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
GP +PGGETEAL RLE +M R WV F+KP TSPNSL+PSTTVLSPYVKFGCL AR FW L+ G +HS PPVSLHGQLLWRE FY+ G AIPNF RM GNP+C Q+ W
Sbjct: 206 GPHLYPGGETEALRRLEHYMQRTSWVCNFQKPETSPNSLDPSTTVLSPYVKFGCLSARTFWWR----LSETYQGRKHSQPPVSLHGQLLWREFFYVIGAAIPNFDRMVGNPVCTQVDW 319
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: UPI00035991FC (cryptochrome-1 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00035991FC) HSP 1 Score: 168 bits (426), Expect = 1.580e-47 Identity = 77/118 (65.25%), Postives = 87/118 (73.73%), Query Frame = 1
Query: 1 GPRRFPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
GP FPGGETEAL R+ERH+ + W+ FEKP TSPNSL PSTTVLSPY+KFGCL R F+H + V SG +HS PPVSLHGQLLWRE FY G PNF RM+GNP+CRQI W
Sbjct: 209 GPLLFPGGETEALDRMERHLKKINWICNFEKPKTSPNSLSPSTTVLSPYLKFGCLSPRLFYHRLQQVY----SGKKHSQPPVSLHGQLLWREFFYTVGAVTPNFDRMKGNPVCRQIPW 322
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: A0A4D9EJ17_9SAUR (Suppressor of cytokine signaling 4 n=1 Tax=Platysternon megacephalum TaxID=55544 RepID=A0A4D9EJ17_9SAUR) HSP 1 Score: 165 bits (417), Expect = 3.010e-47 Identity = 73/118 (61.86%), Postives = 85/118 (72.03%), Query Frame = 1
Query: 1 GPRRFPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
GPR +PGGE+EAL RL+ HM R WV F+KP T PNSL PSTTVLSPY+KFGCL R FW +A + G +H+ PPVSLHGQLLWRE FY G IPNF +MEGNP+C Q+ W
Sbjct: 206 GPRLYPGGESEALCRLDLHMNRMAWVCNFQKPQTEPNSLNPSTTVLSPYIKFGCLSVRTFWWRLAEIY----QGRKHTNPPVSLHGQLLWREFFYTAGAGIPNFNKMEGNPVCVQVDW 319
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: A0A8C5R1D8_9ANUR (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5R1D8_9ANUR) HSP 1 Score: 167 bits (424), Expect = 3.510e-47 Identity = 78/118 (66.10%), Postives = 86/118 (72.88%), Query Frame = 1
Query: 1 GPRRFPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
GP +PGGE+EAL RL+ HM R WV F+KP+T PNSL PSTTVLSPYVKFGCL AR FW +A V G HSAPPVSLHGQLLWRE FY G IPNF RMEGNP+C Q+ W
Sbjct: 206 GPHLYPGGESEALQRLDLHMKRTVWVCNFKKPDTEPNSLSPSTTVLSPYVKFGCLSARTFWWRLAEVY----RGKPHSAPPVSLHGQLLWREFFYTAGAGIPNFSRMEGNPVCVQVDW 319
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: A0A0S7FGT7_9TELE (CRY1 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7FGT7_9TELE) HSP 1 Score: 162 bits (410), Expect = 4.300e-47 Identity = 74/118 (62.71%), Postives = 82/118 (69.49%), Query Frame = 1
Query: 1 GPRRFPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
G FPGGE EAL RL+ HM R WV FEKP TSPNSL PSTTVLSPY+ FGCL AR FW + V G +HSAPPVSLHGQLLWRE FY C IPNF +M+ NP+C Q+ W
Sbjct: 149 GEELFPGGEQEALRRLDEHMKRTGWVCSFEKPQTSPNSLSPSTTVLSPYITFGCLSARTFWWRLTEVY----QGKKHSAPPVSLHGQLLWREFFYTCSVGIPNFNKMKQNPVCTQVDW 262
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: UPI0009E5366C (cryptochrome-1-like n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5366C) HSP 1 Score: 167 bits (423), Expect = 5.140e-47 Identity = 75/114 (65.79%), Postives = 88/114 (77.19%), Query Frame = 1
Query: 13 FPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
FPGGETEAL RL+ HM + WV +FEKPNTSPNSL+PSTTVLSPYV FGCL AR F+H ++ V S +HS+PPVSLHGQLLWRE F+ +A PNF RMEGNP+C Q+ W
Sbjct: 215 FPGGETEALRRLDEHMEKEDWVCKFEKPNTSPNSLQPSTTVLSPYVMFGCLSARLFYHRLSEVY---SRAKKHSSPPVSLHGQLLWREFFFTAAYATPNFNRMEGNPVCLQVPW 325
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Match: F2U6L6_SALR5 (DNA photolyase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U6L6_SALR5) HSP 1 Score: 167 bits (423), Expect = 5.380e-47 Identity = 76/115 (66.09%), Postives = 88/115 (76.52%), Query Frame = 1
Query: 10 RFPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVKFGCLGARRFWHAVAAVLAAQSSGGRHSAPPVSLHGQLLWREHFYLCGHAIPNFGRMEGNPICRQITW 354
RFPGGETEAL R+ RH+ R W+A FEKP TSPN+LEPSTT LSPY+KFGCL R F+H +A V A H+ PPVSLHGQLLWRE F++CG+A+ NF RMEGN ICRQI W
Sbjct: 216 RFPGGETEALERMRRHLQRKAWIAHFEKPKTSPNTLEPSTTGLSPYLKFGCLSPRLFYHELARVYAEYRD---HAKPPVSLHGQLLWREFFHMCGYAVKNFDRMEGNRICRQIDW 327 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5927.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5927.2.1 >prot_P-wetherbeei_contig5927.2.1 ID=prot_P-wetherbeei_contig5927.2.1|Name=mRNA_P-wetherbeei_contig5927.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp GPRRFPGGETEALARLERHMARGRWVAEFEKPNTSPNSLEPSTTVLSPYVback to top mRNA from alignment at P-wetherbeei_contig5927:2667..3629+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5927.2.1 ID=mRNA_P-wetherbeei_contig5927.2.1|Name=mRNA_P-wetherbeei_contig5927.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=963bp|location=Sequence derived from alignment at P-wetherbeei_contig5927:2667..3629+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5927:2667..3629+ >mRNA_P-wetherbeei_contig5927.2.1 ID=mRNA_P-wetherbeei_contig5927.2.1|Name=mRNA_P-wetherbeei_contig5927.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig5927:2667..3629+ (Phaeothamnion wetherbeei SAG_119_79)back to top |