mRNA_P-wetherbeei_contig59261.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59261.1.1
Unique NamemRNA_P-wetherbeei_contig59261.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig59261.1.1 vs. uniprot
Match: UPI001C3C5BA0 (flagellar basal body rod protein FlgB n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3C5BA0)

HSP 1 Score: 184 bits (467), Expect = 1.210e-57
Identity = 96/136 (70.59%), Postives = 113/136 (83.09%), Query Frame = 1
Query:    4 MFPDDLTTEVLSASLRGHEARNAAIANNIANAETPGYKRMDVSFEAALAQAVETDRASLNRDPGSLTAFDSGAGRAIDETGPNVMSVDTTAVRVDGSNVDPDDEMAQLSANELAHQTVVSLLDKRFSQFMTAITGH 411
            MFPDDLTTEVL+ASLRGH+ARNAA+ NNIANAETPGYKR+DV FE+ALA+AV++DR  + R     ++F   AG  ++ + P+V SV TT +RVDGSNVD DDEMAQLSAN+LAHQTVVSLLDKRFSQF TAITG 
Sbjct:    1 MFPDDLTTEVLTASLRGHDARNAALVNNIANAETPGYKRIDVQFESALAEAVQSDRERIRRGSMGESSFLGAAGE-VEGSAPSVRSVGTTTMRVDGSNVDADDEMAQLSANQLAHQTVVSLLDKRFSQFRTAITGR 135          
BLAST of mRNA_P-wetherbeei_contig59261.1.1 vs. uniprot
Match: UPI001C3C8D16 (flagellar basal body rod protein FlgB n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3C8D16)

HSP 1 Score: 155 bits (392), Expect = 3.120e-46
Identity = 81/136 (59.56%), Postives = 106/136 (77.94%), Query Frame = 1
Query:    4 MFPDDLTTEVLSASLRGHEARNAAIANNIANAETPGYKRMDVSFEAALAQAVETDRASLNRDPGSLTAFDSGAGRAIDETGPNVMSVDTTAVRVDGSNVDPDDEMAQLSANELAHQTVVSLLDKRFSQFMTAITGH 411
            MF  DLTTEVL+A+ RG++AR+ A+A+NIANAETPGYKR++V FE+ALA+AVE DR+ + R P +        G A++ + P V S  TT +RVDGSNVDPD EMA+L+AN+LAHQTVV++LDKRF+QF  A+TG 
Sbjct:    1 MFFGDLTTEVLTAAARGYDARHTALASNIANAETPGYKRIEVQFESALAKAVEDDRSRMGRGPATSLPSPFAQGDAVESSRPAVSSSGTT-MRVDGSNVDPDAEMAELAANQLAHQTVVAMLDKRFTQFRMAVTGR 135          
BLAST of mRNA_P-wetherbeei_contig59261.1.1 vs. uniprot
Match: A0A2M7T7G7_9ACTN (Flagellar basal body rod protein FlgB n=1 Tax=Candidatus Aquicultor secundus TaxID=1973895 RepID=A0A2M7T7G7_9ACTN)

HSP 1 Score: 84.3 bits (207), Expect = 3.380e-18
Identity = 50/137 (36.50%), Postives = 71/137 (51.82%), Query Frame = 1
Query:    4 MFPDDLTTEVLSASLRGHEARNAAIANNIANAETPGYKRMDVSFEAALAQAVET--DRASLNRDPGSLTAFDSGAGRAIDETGPNVMSVDTTAVRVDGSNVDPDDEMAQLSANELAHQTVVSLLDKRFSQFMTAITG 408
            +F +D T   L   L     +   IANN+AN  TPGYK+ DVSFE    QA++   D   L  DP  L       G ++   G  V +V  T++R DG+NVD D+EM++L+ N + +  +  L+  R S   T I G
Sbjct:    5 LFSND-TFVALQKGLDASSLKQQVIANNVANINTPGYKKQDVSFEDEFKQAIDNKYDAGMLQTDPRHLPG-----GSSLTSVGIKVTTVGATSMRYDGNNVDIDEEMSKLAENTIRYNAMAQLMSSRLSSLKTVING 135          
BLAST of mRNA_P-wetherbeei_contig59261.1.1 vs. uniprot
Match: UPI0019CC71B1 (flagellar basal body rod protein FlgB n=1 Tax=Alicyclobacillus cellulosilyticus TaxID=1003997 RepID=UPI0019CC71B1)

HSP 1 Score: 83.2 bits (204), Expect = 9.550e-18
Identity = 54/133 (40.60%), Postives = 75/133 (56.39%), Query Frame = 1
Query:   19 LTTEV---LSASLRGHEARNAAIANNIANAETPGYKRMDVSFEAALAQAVETDRASLNRDPGSLTAFDSGAGRAIDETGPNVMSVDTTAVRVDGSNVDPDDEMAQLSANELAHQTVVSLLDKRFSQFMTAITG 408
            LT++V   L  +L   + R  A ANNIANA+TPGY+RMDVSFE AL QA+   R++   DP  L A      +A+ +  P  +    T V  +G+NVD D EMAQL+ N++ +  +V  L   F +    I G
Sbjct:    3 LTSDVMALLQTALTAADMRQVAYANNIANADTPGYQRMDVSFEDALQQALGLTRSASPGDP--LAALTGADWQAVRQIQPTWVVAGGTLVDNNGNNVDLDAEMAQLATNQIRYNGLVQALRSDFDRLHAVIGG 133          
BLAST of mRNA_P-wetherbeei_contig59261.1.1 vs. uniprot
Match: UPI000368C73D (flagellar basal body rod protein FlgB n=1 Tax=Effusibacillus pohliae TaxID=232270 RepID=UPI000368C73D)

HSP 1 Score: 82.4 bits (202), Expect = 1.950e-17
Identity = 48/139 (34.53%), Postives = 76/139 (54.68%), Query Frame = 1
Query:    1 LMFPDDLTTEVLSASLRGHEARNAAIANNIANAETPGYKRMDVSFEAALAQAVETDRAS---LNRDPGSLTAFDSGAGRAIDETGPNVMSVDTTAVRVDGSNVDPDDEMAQLSANELAHQTVVSLLDKRFSQFMTAITG 408
            + F +  + ++   +L     R   +ANNIAN +TP +KR D+SFE+ L   +E   A    L  DP  + A      R+I +  P ++  ++TAV  +G+NVD D EM QL+ N++ +  VV L+   F++  TAI G
Sbjct:    1 MSFINTKSMQIYERTLDAASLRQKELANNIANVDTPNFKRSDISFESTLQAYLEQKNAPIQLLQTDPRHIPA----GPRSISQIQPEIIVENSTAVNNNGNNVDIDSEMTQLAVNQIKYNAVVQLISGHFNKLRTAIQG 135          
BLAST of mRNA_P-wetherbeei_contig59261.1.1 vs. uniprot
Match: A0A139CVE0_9FIRM (Flagellar basal body rod protein FlgB n=2 Tax=unclassified Candidatus Frackibacter TaxID=2648818 RepID=A0A139CVE0_9FIRM)

HSP 1 Score: 82.0 bits (201), Expect = 2.560e-17
Identity = 53/128 (41.41%), Postives = 71/128 (55.47%), Query Frame = 1
Query:   22 TTEVLSASLRGHEARNAAIANNIANAETPGYKRMDVSFEAALAQAVETDRASLNR-DPGSLTAFDSGAGRAIDETGPNVMSVDTTAVRVDGSNVDPDDEMAQLSANELAHQTVVSLLDKRFSQFMTAI 402
            TT +LS +L G + R+ AIANN+AN +TP YKR DV F++ L  A+E D   LN+ D   LT         I +  P V   + T++R D +NVD D EMA L+ N L +Q V  LL  +F      I
Sbjct:    9 TTTILSKALDGIQLRHQAIANNLANVDTPEYKRRDVDFKSELKAALEQDDLKLNKTDNMHLTT-----NNKISQFKPKVQVENDTSMRNDKNNVDIDYEMAALAKNTLEYQAVTKLLSMKFKNLGNVI 131          
BLAST of mRNA_P-wetherbeei_contig59261.1.1 vs. uniprot
Match: A0A4Q1ZXX7_9FIRM (Flagellar basal body rod protein FlgB n=1 Tax=Fusibacter sp. A1 TaxID=2283630 RepID=A0A4Q1ZXX7_9FIRM)

HSP 1 Score: 80.9 bits (198), Expect = 7.210e-17
Identity = 50/132 (37.88%), Postives = 76/132 (57.58%), Query Frame = 1
Query:   16 DLTTEVLSASLRGHEARNAAIANNIANAETPGYKRMDVSFEAALAQAVETDRASLNRD-PGSLTAFDSGAGRAIDETGPNVMSVDTTAVRVDGSNVDPDDEMAQLSANELAHQTVVSLLDKRFSQFMTAITG 408
            DL  + L AS      R   ++NNIAN  TPGYKR DV FE  L   +   R S+N   PG +T   SG    +D   P V++ + T++R+DG+NV+ D EMA+L+ N + +  VV+ ++ +  +  +AI+G
Sbjct:   10 DLQKKALDASW----LRQDILSNNIANVNTPGYKRQDVEFENLLEDYLSGKRFSINATHPGHITDGFSG----LDSVRPRVITEENTSLRIDGNNVNVDTEMAELAKNSIKYNAVVTDVNSQLRRLKSAISG 133          
BLAST of mRNA_P-wetherbeei_contig59261.1.1 vs. uniprot
Match: UPI0002FEBA75 (flagellar basal body protein n=1 Tax=Zavarzinella formosa TaxID=360055 RepID=UPI0002FEBA75)

HSP 1 Score: 79.7 bits (195), Expect = 1.280e-16
Identity = 48/132 (36.36%), Postives = 67/132 (50.76%), Query Frame = 1
Query:   16 DLTTEVLSASLRGHEARNAAIANNIANAETPGYKRMDVSFEAALAQAVETDRASLNRDPGSLTAFDSGAGRAIDETGPNVMSVDTTAVRVDGSNVDPDDEMAQLSANELAHQTVVSLLDKRFSQFMTAITGH 411
            DL T V+  +   H+     IANN+AN  TPG+KR+ V FE  L++A+E                   AG  +    P +++ DTTA RVDG+ VD D EM QLS N L +     +L  + +Q  +AI G 
Sbjct:    9 DLLTRVMDTAALRHKV----IANNVANVNTPGFKRLGVEFEQTLSKAIE-------------------AGTPVTSVSPTIVTDDTTAERVDGNTVDIDREMQQLSMNSLLYTAASQILANQLAQLRSAIAGR 117          
BLAST of mRNA_P-wetherbeei_contig59261.1.1 vs. uniprot
Match: A0A1T4MAC7_9FIRM (Flagellar basal body rod protein FlgB n=1 Tax=Selenihalanaerobacter shriftii TaxID=142842 RepID=A0A1T4MAC7_9FIRM)

HSP 1 Score: 80.1 bits (196), Expect = 1.510e-16
Identity = 53/131 (40.46%), Postives = 74/131 (56.49%), Query Frame = 1
Query:    1 LMFPDDLTTEVLSASLRGHEARNAAIANNIANAETPGYKRMDVSFEAALAQA-VETDRASLNRDPGSLTAFD-SGAGRAIDETGPNVMSVDTTAVRVDGSNVDPDDEMAQLSANELAHQTVVSLLDKRFSQ 387
            + F  D TT +LS++L G   R  AI+NNIAN +TP YKR DV+FE+ L QA     R S+N        F  +G  +A     P + S + T++R D +NVD D EM  L+ N L +Q+V  LL  +F +
Sbjct:    1 MAFLGDQTTSILSSALDGLSLRKQAISNNIANVDTPNYKRKDVNFESQLQQARYNYKRQSINLSRTDNEHFSINGKHQAF---APKIRSDNNTSMRNDKNNVDIDYEMTALAKNTLKYQSVTKLLSTKFKK 128          
BLAST of mRNA_P-wetherbeei_contig59261.1.1 vs. uniprot
Match: A0A1G2YVF4_9BACT (Flagellar basal body rod protein FlgB n=1 Tax=Planctomycetes bacterium RBG_13_60_9 TaxID=1801963 RepID=A0A1G2YVF4_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 1.770e-16
Identity = 48/132 (36.36%), Postives = 69/132 (52.27%), Query Frame = 1
Query:    7 FPDDLTTEVLSASLRGHEARNAAIANNIANAETPGYKRMDVSFEAALAQAVETDRASLNRDPGSLTAFDSGAGRAIDETGPNVMSVDTTAVRVDGSNVDPDDEMAQLSANELAHQTVVSLLDKRFSQFMTAI 402
             P+  T ++L A +R  E R   IA+NIAN ETPGY+R+DV FE  LA+A++         PG +          +D   P +   +  A++ +G+NV  + E+  L    L H T V LL K+FSQ   AI
Sbjct:    1 MPEPSTIDLLQAGIRAEELRQKTIASNIANVETPGYRRVDVKFERLLAKALDC--------PGRID---------LDRFEPELYRPNDPALKSNGNNVSMEAEIGDLVRTSLRHTTYVRLLHKKFSQIQAAI 115          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59261.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3C5BA01.210e-5770.59flagellar basal body rod protein FlgB n=1 Tax=Milt... [more]
UPI001C3C8D163.120e-4659.56flagellar basal body rod protein FlgB n=1 Tax=Milt... [more]
A0A2M7T7G7_9ACTN3.380e-1836.50Flagellar basal body rod protein FlgB n=1 Tax=Cand... [more]
UPI0019CC71B19.550e-1840.60flagellar basal body rod protein FlgB n=1 Tax=Alic... [more]
UPI000368C73D1.950e-1734.53flagellar basal body rod protein FlgB n=1 Tax=Effu... [more]
A0A139CVE0_9FIRM2.560e-1741.41Flagellar basal body rod protein FlgB n=2 Tax=uncl... [more]
A0A4Q1ZXX7_9FIRM7.210e-1737.88Flagellar basal body rod protein FlgB n=1 Tax=Fusi... [more]
UPI0002FEBA751.280e-1636.36flagellar basal body protein n=1 Tax=Zavarzinella ... [more]
A0A1T4MAC7_9FIRM1.510e-1640.46Flagellar basal body rod protein FlgB n=1 Tax=Sele... [more]
A0A1G2YVF4_9BACT1.770e-1636.36Flagellar basal body rod protein FlgB n=1 Tax=Plan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59261contigP-wetherbeei_contig59261:45..458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1094508.Tsac_1778
Preferred nameflgB
PFAMsFlg_bb_rod
Model size414
Max annot lvl186801|Clostridia
KEGG koko:K02387
KEGG Pathwayko02040,map02040
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.31e-17
EggNOG OGsCOG1815@1|root,COG1815@2|Bacteria,1VEUZ@1239|Firmicutes,24RBE@186801|Clostridia,42GR9@68295|Thermoanaerobacterales
DescriptionStructural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body
Cds size411
COG categoryN
BRITEko00000,ko00001,ko02035
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186875.7675433-UTR-P-wetherbeei_contig59261:44..471683186875.7675433-UTR-P-wetherbeei_contig59261:44..47Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig59261 45..47 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186875.7787058-CDS-P-wetherbeei_contig59261:47..4581683186875.7787058-CDS-P-wetherbeei_contig59261:47..458Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59261 48..458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59261.1.1prot_P-wetherbeei_contig59261.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59261 48..458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59261.1.1

>prot_P-wetherbeei_contig59261.1.1 ID=prot_P-wetherbeei_contig59261.1.1|Name=mRNA_P-wetherbeei_contig59261.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
MFPDDLTTEVLSASLRGHEARNAAIANNIANAETPGYKRMDVSFEAALAQ
AVETDRASLNRDPGSLTAFDSGAGRAIDETGPNVMSVDTTAVRVDGSNVD
PDDEMAQLSANELAHQTVVSLLDKRFSQFMTAITGH*
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mRNA from alignment at P-wetherbeei_contig59261:45..458+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59261.1.1 ID=mRNA_P-wetherbeei_contig59261.1.1|Name=mRNA_P-wetherbeei_contig59261.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig59261:45..458+ (Phaeothamnion wetherbeei SAG_119_79)
CTGATGTTCCCCGACGACCTCACCACCGAGGTGCTGTCGGCCTCCCTGCG CGGCCACGAGGCCCGCAACGCGGCGATCGCCAACAACATCGCCAACGCGG AGACCCCGGGCTACAAGCGGATGGACGTCTCGTTCGAGGCGGCGCTGGCC CAGGCCGTGGAGACCGACCGGGCGAGCCTCAACCGCGATCCGGGCTCCCT CACGGCGTTCGACTCGGGCGCCGGGCGCGCCATCGACGAGACCGGCCCGA ACGTGATGTCGGTCGACACGACCGCCGTCCGCGTGGACGGCAGCAACGTC GACCCCGACGACGAGATGGCCCAGCTCTCGGCCAACGAGCTGGCGCACCA GACCGTCGTCTCGCTGCTGGACAAGCGGTTCTCGCAGTTCATGACCGCCA TCACCGGCCACTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59261:45..458+

>mRNA_P-wetherbeei_contig59261.1.1 ID=mRNA_P-wetherbeei_contig59261.1.1|Name=mRNA_P-wetherbeei_contig59261.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig59261:45..458+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCCCCGACGACCTCACCACCGAGGTGCTGTCGGCCTCCCTGCGCGG
CCACGAGGCCCGCAACGCGGCGATCGCCAACAACATCGCCAACGCGGAGA
CCCCGGGCTACAAGCGGATGGACGTCTCGTTCGAGGCGGCGCTGGCCCAG
GCCGTGGAGACCGACCGGGCGAGCCTCAACCGCGATCCGGGCTCCCTCAC
GGCGTTCGACTCGGGCGCCGGGCGCGCCATCGACGAGACCGGCCCGAACG
TGATGTCGGTCGACACGACCGCCGTCCGCGTGGACGGCAGCAACGTCGAC
CCCGACGACGAGATGGCCCAGCTCTCGGCCAACGAGCTGGCGCACCAGAC
CGTCGTCTCGCTGCTGGACAAGCGGTTCTCGCAGTTCATGACCGCCATCA
CCGGCCACTAG
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