mRNA_P-wetherbeei_contig59127.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59127.1.1
Unique NamemRNA_P-wetherbeei_contig59127.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A401UC50_9BACT (RNA polymerase n=1 Tax=Chryseotalea sanaruensis TaxID=2482724 RepID=A0A401UC50_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 1.200e-15
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 LKDELNEERSTEHLLPKLQSTLEKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLRKF 213
            L  EL EE S EHL  +L+  L++L   EL+L+ELRFFE   FKE+  IL+I+EV+AKVKTYRTL+KL+K+
Sbjct:  110 LHSELTEEFSLEHLQVRLEELLQRLEPDELHLLELRFFESRPFKEVAAILNISEVYAKVKTYRTLEKLKKY 180          
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A1G9RIV9_9BACT (RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Catalinimonas alkaloidigena TaxID=1075417 RepID=A0A1G9RIV9_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 4.420e-14
Identity = 41/73 (56.16%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    1 LKDELNEE-RSTEHLLPKLQSTLEKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLRKFL 216
            L  EL+EE    E L+ +L  TLEKLSEQE+ LIELRF+E++SF++IG  L ITE +AKV+TYR L+K++K++
Sbjct:  101 LVSELHEEGEEKERLVERLALTLEKLSEQEVQLIELRFYEQMSFRDIGYTLRITENNAKVRTYRLLEKMKKYM 173          
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A5C7Z3G3_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A5C7Z3G3_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 1.160e-12
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 LKDELNEERSTEHLLPKLQSTLEKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLRKF 213
            L DEL   ++ +    +L   LE+L+ QEL LIELRFF+ LSFKE+ EIL ITE +AKV+TYR LDK++K 
Sbjct:  115 LVDELTSNQTVDEWHARLPHILEQLTAQELQLIELRFFDLLSFKEVAEILEITESNAKVRTYRILDKMKKL 185          
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A2N5YJI3_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Marinilabiliales bacterium TaxID=2053303 RepID=A0A2N5YJI3_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 1.570e-12
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1
Query:   28 STEHLLPKLQSTLEKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLRK 210
            S E L+  L   L+ L +QEL LIE+RFFE+ SFKEI +ILSITE +AKVKTYR LDK+R+
Sbjct:  114 SNEELIEILYKVLDDLPQQELILIEMRFFEKRSFKEIADILSITESNAKVKTYRLLDKIRE 174          
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A7W1SQB7_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7W1SQB7_9BACT)

HSP 1 Score: 68.9 bits (167), Expect = 2.820e-12
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1
Query:   52 LQSTLEKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLR 207
            L++ L KL E EL LIE+RFFEE+SFK IGEIL ITE +AKVKTYR +DKL+
Sbjct:  122 LENALAKLKEVELQLIEMRFFEEMSFKSIGEILEITENNAKVKTYRIIDKLK 173          
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A661XUU3_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A661XUU3_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 3.520e-12
Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    1 LKDELNEERSTEHLLPKLQSTLEKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLRKFLTS 222
            L  E  EE   EH L ++   L +L+E EL  IELRFFE+ SFKEIG +L +TEV+AKV+TYR L KL+   TS
Sbjct:  139 LSQETIEESRYEHALEEVPKLLSQLNENELQCIELRFFEKKSFKEIGFMLGLTEVNAKVRTYRILKKLKNIATS 212          
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A556N640_9FLAO (Sigma-70 family RNA polymerase sigma factor n=2 Tax=Fluviicola TaxID=332102 RepID=A0A556N640_9FLAO)

HSP 1 Score: 68.9 bits (167), Expect = 3.560e-12
Identity = 35/60 (58.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query:   34 EHLLPKLQSTLEKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLRKF 213
            EH    L S ++KL +++L LIE+RFFE+LSFKEIGE + ITE +AKVKT+R L+KLR++
Sbjct:  127 EHNRSLLLSAMQKLKQEQLKLIEMRFFEQLSFKEIGETIGITENNAKVKTFRALEKLREY 186          
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A3D6ES74_9BACT (RNA polymerase n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3D6ES74_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 6.550e-12
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 LKDELNEERSTEHLLPKLQSTLEKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLRKF 213
            L DEL  +++ E    +L   LE L+E EL LIELRFFE   FKEI EIL +TE +AKV+TYR LDK++K 
Sbjct:  115 LVDELTSDQTIEEWHQRLPQILELLTEAELQLIELRFFEARPFKEIAEILELTENNAKVRTYRVLDKMKKL 185          
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A350JK99_9FLAO (RNA polymerase n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A350JK99_9FLAO)

HSP 1 Score: 68.2 bits (165), Expect = 6.660e-12
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    7 DELNEERSTEHLLPKLQSTLEKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLRKFLT 219
            +E ++    E +L  L+S L  + E  L LIE+RFF++ SFKEIGEIL I+E +AK+KTYR LDKL+K LT
Sbjct:  117 EESDDAMELEMVLQNLESVLATIDEPLLALIEMRFFDQKSFKEIGEILGISEGNAKIKTYRALDKLKKKLT 187          
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A1F3QBQ0_9BACT (Heat-shock protein n=1 Tax=Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_35_15 TaxID=1797364 RepID=A0A1F3QBQ0_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 8.870e-12
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:   67 EKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLRKFL 216
            E L E EL LIE+RFFE+ SFKE+GEIL ITE +AKVKTYR LDKL+K +
Sbjct:  137 ENLEEDELQLIEMRFFEKRSFKEMGEILEITENNAKVKTYRILDKLKKII 186          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401UC50_9BACT1.200e-1557.75RNA polymerase n=1 Tax=Chryseotalea sanaruensis Ta... [more]
A0A1G9RIV9_9BACT4.420e-1456.16RNA polymerase sigma-70 factor, ECF subfamily n=2 ... [more]
A0A5C7Z3G3_9BACT1.160e-1254.93Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A2N5YJI3_9BACT1.570e-1262.30Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A7W1SQB7_9BACT2.820e-1269.23Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A661XUU3_9BACT3.520e-1254.05Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
A0A556N640_9FLAO3.560e-1258.33Sigma-70 family RNA polymerase sigma factor n=2 Ta... [more]
A0A3D6ES74_9BACT6.550e-1254.93RNA polymerase n=1 Tax=Cytophagales bacterium TaxI... [more]
A0A350JK99_9FLAO6.660e-1253.52RNA polymerase n=1 Tax=Flavobacteriales bacterium ... [more]
A0A1F3QBQ0_9BACT8.870e-1270.00Heat-shock protein n=1 Tax=Bacteroidetes bacterium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59127contigP-wetherbeei_contig59127:180..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog153721.MYP_530
PFAMsSigma70_r2,Sigma70_r4
Model size320
Max annot lvl976|Bacteroidetes
KEGG koko:K03088
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.01e-12
EggNOG OGsCOG1595@1|root,COG1595@2|Bacteria,4NR8J@976|Bacteroidetes,47XM3@768503|Cytophagia
DescriptionSigma-70 region 2
Cds size231
COG categoryK
BRITEko00000,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186874.2501855-UTR-P-wetherbeei_contig59127:179..2681683186874.2501855-UTR-P-wetherbeei_contig59127:179..268Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig59127 180..268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186874.267025-CDS-P-wetherbeei_contig59127:268..4991683186874.267025-CDS-P-wetherbeei_contig59127:268..499Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59127 269..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59127.1.1prot_P-wetherbeei_contig59127.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59127 269..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59127.1.1

>prot_P-wetherbeei_contig59127.1.1 ID=prot_P-wetherbeei_contig59127.1.1|Name=mRNA_P-wetherbeei_contig59127.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=77bp
LKDELNEERSTEHLLPKLQSTLEKLSEQELYLIELRFFEELSFKEIGEIL
SITEVHAKVKTYRTLDKLRKFLTSGK*
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mRNA from alignment at P-wetherbeei_contig59127:180..499-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59127.1.1 ID=mRNA_P-wetherbeei_contig59127.1.1|Name=mRNA_P-wetherbeei_contig59127.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=320bp|location=Sequence derived from alignment at P-wetherbeei_contig59127:180..499- (Phaeothamnion wetherbeei SAG_119_79)
TTGAAAGATGAACTGAACGAAGAAAGATCGACTGAGCATTTACTACCCAA GCTTCAAAGCACACTGGAAAAGTTATCGGAACAAGAATTATACTTGATTG AATTACGTTTTTTTGAAGAGCTTTCTTTTAAGGAAATTGGAGAAATCCTT TCCATAACCGAGGTACATGCCAAGGTAAAAACGTATCGTACACTGGATAA GCTTAGAAAATTTTTAACGTCCGGAAAATGAAGCGGAAGATTACGATAGT GGATAGGCGTGAGAAAATAAGCGATGCTGAAATAGATCGCTTCAAGGATT TTGATACGCTGCTAATAAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59127:180..499-

>mRNA_P-wetherbeei_contig59127.1.1 ID=mRNA_P-wetherbeei_contig59127.1.1|Name=mRNA_P-wetherbeei_contig59127.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig59127:180..499- (Phaeothamnion wetherbeei SAG_119_79)
TTGAAAGATGAACTGAACGAAGAAAGATCGACTGAGCATTTACTACCCAA
GCTTCAAAGCACACTGGAAAAGTTATCGGAACAAGAATTATACTTGATTG
AATTACGTTTTTTTGAAGAGCTTTCTTTTAAGGAAATTGGAGAAATCCTT
TCCATAACCGAGGTACATGCCAAGGTAAAAACGTATCGTACACTGGATAA
GCTTAGAAAATTTTTAACGTCCGGAAAATGA
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