mRNA_P-wetherbeei_contig59127.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A401UC50_9BACT (RNA polymerase n=1 Tax=Chryseotalea sanaruensis TaxID=2482724 RepID=A0A401UC50_9BACT) HSP 1 Score: 77.8 bits (190), Expect = 1.200e-15 Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 1
Query: 1 LKDELNEERSTEHLLPKLQSTLEKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLRKF 213
L EL EE S EHL +L+ L++L EL+L+ELRFFE FKE+ IL+I+EV+AKVKTYRTL+KL+K+
Sbjct: 110 LHSELTEEFSLEHLQVRLEELLQRLEPDELHLLELRFFESRPFKEVAAILNISEVYAKVKTYRTLEKLKKY 180
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A1G9RIV9_9BACT (RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Catalinimonas alkaloidigena TaxID=1075417 RepID=A0A1G9RIV9_9BACT) HSP 1 Score: 73.6 bits (179), Expect = 4.420e-14 Identity = 41/73 (56.16%), Postives = 57/73 (78.08%), Query Frame = 1
Query: 1 LKDELNEE-RSTEHLLPKLQSTLEKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLRKFL 216
L EL+EE E L+ +L TLEKLSEQE+ LIELRF+E++SF++IG L ITE +AKV+TYR L+K++K++
Sbjct: 101 LVSELHEEGEEKERLVERLALTLEKLSEQEVQLIELRFYEQMSFRDIGYTLRITENNAKVRTYRLLEKMKKYM 173
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A5C7Z3G3_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A5C7Z3G3_9BACT) HSP 1 Score: 70.1 bits (170), Expect = 1.160e-12 Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 1 LKDELNEERSTEHLLPKLQSTLEKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLRKF 213
L DEL ++ + +L LE+L+ QEL LIELRFF+ LSFKE+ EIL ITE +AKV+TYR LDK++K
Sbjct: 115 LVDELTSNQTVDEWHARLPHILEQLTAQELQLIELRFFDLLSFKEVAEILEITESNAKVRTYRILDKMKKL 185
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A2N5YJI3_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Marinilabiliales bacterium TaxID=2053303 RepID=A0A2N5YJI3_9BACT) HSP 1 Score: 69.7 bits (169), Expect = 1.570e-12 Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1
Query: 28 STEHLLPKLQSTLEKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLRK 210
S E L+ L L+ L +QEL LIE+RFFE+ SFKEI +ILSITE +AKVKTYR LDK+R+
Sbjct: 114 SNEELIEILYKVLDDLPQQELILIEMRFFEKRSFKEIADILSITESNAKVKTYRLLDKIRE 174
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A7W1SQB7_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7W1SQB7_9BACT) HSP 1 Score: 68.9 bits (167), Expect = 2.820e-12 Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1
Query: 52 LQSTLEKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLR 207
L++ L KL E EL LIE+RFFEE+SFK IGEIL ITE +AKVKTYR +DKL+
Sbjct: 122 LENALAKLKEVELQLIEMRFFEEMSFKSIGEILEITENNAKVKTYRIIDKLK 173
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A661XUU3_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A661XUU3_9BACT) HSP 1 Score: 69.3 bits (168), Expect = 3.520e-12 Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 1
Query: 1 LKDELNEERSTEHLLPKLQSTLEKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLRKFLTS 222
L E EE EH L ++ L +L+E EL IELRFFE+ SFKEIG +L +TEV+AKV+TYR L KL+ TS
Sbjct: 139 LSQETIEESRYEHALEEVPKLLSQLNENELQCIELRFFEKKSFKEIGFMLGLTEVNAKVRTYRILKKLKNIATS 212
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A556N640_9FLAO (Sigma-70 family RNA polymerase sigma factor n=2 Tax=Fluviicola TaxID=332102 RepID=A0A556N640_9FLAO) HSP 1 Score: 68.9 bits (167), Expect = 3.560e-12 Identity = 35/60 (58.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query: 34 EHLLPKLQSTLEKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLRKF 213
EH L S ++KL +++L LIE+RFFE+LSFKEIGE + ITE +AKVKT+R L+KLR++
Sbjct: 127 EHNRSLLLSAMQKLKQEQLKLIEMRFFEQLSFKEIGETIGITENNAKVKTFRALEKLREY 186
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A3D6ES74_9BACT (RNA polymerase n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3D6ES74_9BACT) HSP 1 Score: 68.2 bits (165), Expect = 6.550e-12 Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 1
Query: 1 LKDELNEERSTEHLLPKLQSTLEKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLRKF 213
L DEL +++ E +L LE L+E EL LIELRFFE FKEI EIL +TE +AKV+TYR LDK++K
Sbjct: 115 LVDELTSDQTIEEWHQRLPQILELLTEAELQLIELRFFEARPFKEIAEILELTENNAKVRTYRVLDKMKKL 185
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A350JK99_9FLAO (RNA polymerase n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A350JK99_9FLAO) HSP 1 Score: 68.2 bits (165), Expect = 6.660e-12 Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 7 DELNEERSTEHLLPKLQSTLEKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLRKFLT 219
+E ++ E +L L+S L + E L LIE+RFF++ SFKEIGEIL I+E +AK+KTYR LDKL+K LT
Sbjct: 117 EESDDAMELEMVLQNLESVLATIDEPLLALIEMRFFDQKSFKEIGEILGISEGNAKIKTYRALDKLKKKLT 187
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Match: A0A1F3QBQ0_9BACT (Heat-shock protein n=1 Tax=Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_35_15 TaxID=1797364 RepID=A0A1F3QBQ0_9BACT) HSP 1 Score: 67.8 bits (164), Expect = 8.870e-12 Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query: 67 EKLSEQELYLIELRFFEELSFKEIGEILSITEVHAKVKTYRTLDKLRKFL 216
E L E EL LIE+RFFE+ SFKE+GEIL ITE +AKVKTYR LDKL+K +
Sbjct: 137 ENLEEDELQLIEMRFFEKRSFKEMGEILEITENNAKVKTYRILDKLKKII 186 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59127.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig59127.1.1 >prot_P-wetherbeei_contig59127.1.1 ID=prot_P-wetherbeei_contig59127.1.1|Name=mRNA_P-wetherbeei_contig59127.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=77bp LKDELNEERSTEHLLPKLQSTLEKLSEQELYLIELRFFEELSFKEIGEILback to top mRNA from alignment at P-wetherbeei_contig59127:180..499- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig59127.1.1 ID=mRNA_P-wetherbeei_contig59127.1.1|Name=mRNA_P-wetherbeei_contig59127.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=320bp|location=Sequence derived from alignment at P-wetherbeei_contig59127:180..499- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig59127:180..499- >mRNA_P-wetherbeei_contig59127.1.1 ID=mRNA_P-wetherbeei_contig59127.1.1|Name=mRNA_P-wetherbeei_contig59127.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig59127:180..499- (Phaeothamnion wetherbeei SAG_119_79)back to top |