mRNA_P-wetherbeei_contig58736.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58736.1.1
Unique NamemRNA_P-wetherbeei_contig58736.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58736.1.1 vs. uniprot
Match: A0A3D4MG60_9PROT (Protein kinase domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D4MG60_9PROT)

HSP 1 Score: 70.1 bits (170), Expect = 5.250e-11
Identity = 46/155 (29.68%), Postives = 67/155 (43.23%), Query Frame = 1
Query:   22 LIDDDVKTRWSLAAITDWTNGRRPQIPQKRPSARRGSPLQIGPVQCLEPRELAYAIHRYPEPAATSLERGEIANWLKANDVQRAISLGIDEAGSNAAQAPPPVLLAREAVRLDPVGPIRYRDLSFFPNGAGSVIYAALLDGSRRQQFEELFTARL 486
            ++ DD   RW+L     W  GRR    Q     R   P      +  E R LA  +  +P      +E+  +  WLK N   R + L ++        A    ++A     LDP  P+RYRDLS FP G G+ +  A+  G   Q + EL + +L
Sbjct:  288 VLHDDEAARWNLEDAQRWLEGRRLSAKQPHNVMRARRPFVFRDRKYWELRTLAMDLAAHPSDTLALIEKDGLDLWLKRNFEDRDLELRLETFWKKEDGALRERVVAELVQALDPYAPVRYRDLSLFPQGFGTALADAMARGEDVQHYAELISLQL 442          
BLAST of mRNA_P-wetherbeei_contig58736.1.1 vs. uniprot
Match: W6KC60_MAGSQ (Uncharacterized protein n=1 Tax=Magnetospira sp. (strain QH-2) TaxID=1288970 RepID=W6KC60_MAGSQ)

HSP 1 Score: 67.8 bits (164), Expect = 3.320e-10
Identity = 53/157 (33.76%), Postives = 73/157 (46.50%), Query Frame = 1
Query:    1 LFDPVMALIDDDVKTRWSLAAITDWTNGRRPQIPQKRPSAR---RGSPLQIGPVQCLEPRELAYAIHRYPEPAATSLERGEIANWLKAN--DVQRAISLGID----EAGSNAAQAPPPVLLAREAVRLDPVGPIRYRDLSFFPNGAGSVIYAALLDG 444
            L + +  L+ DD    W L  +  W +GRR Q P +R +A+   RG   +      L  R LA+A  R  E A  +L+ G +  W+K +  D + A          EA     Q     L+A   + LDP GPIRYR LSF P G G V    ++DG
Sbjct:  270 LVEVLRGLLSDDPTEAWGLDELQAWIDGRR-QSPIQRKAAKKADRGFVFENHEYDNL--RTLAHAFARNQEAALKALKEGHVIRWIKRSLEDSEMAGXXXXXXXXLEATKGNRQRAEDALMANICIALDPEGPIRYRGLSFVPEGIGPVYAKEMIDG 423          
BLAST of mRNA_P-wetherbeei_contig58736.1.1 vs. uniprot
Match: A0A8J2YST9_9PROT (Protein kinase domain-containing protein n=2 Tax=Aliidongia dinghuensis TaxID=1867774 RepID=A0A8J2YST9_9PROT)

HSP 1 Score: 67.0 bits (162), Expect = 6.100e-10
Identity = 52/163 (31.90%), Postives = 74/163 (45.40%), Query Frame = 1
Query:   22 LIDDDVKTRWSLAAITDWTNGRR--PQIPQKRPSARRGSPLQIGPVQCLEPRELAYAIHRYPEPAATSLERGEIANWLKAN----DVQRAISLGIDEAGSNAAQAP--PPVLLAREAVRLDPVGPIRYRDLSFFPNGAGSVIYAALLDGSRRQQFEELFTARL 486
            L+ D+   RW++  I  W  GRR  P+ P   P + R  PL++G  Q    R  A A+ R  + A   +    +  W++          A +L + +A  NA  A      L AR    LDP+GPIRYRDL+  P+G G V+  A       +   EL   RL
Sbjct:  248 LLVDEPTERWTVREIDMWLQGRRMSPKSPTVPPRSAR--PLELGREQVFTARAAARALTRQGDQAVHLIRGHALEIWIQRTLGHKPTMDAFALAMADADDNAGNAGVHDARLTARVTTALDPLGPIRYRDLALVPDGFGCVLALAHTRSKDARPLVELLVGRL 408          
BLAST of mRNA_P-wetherbeei_contig58736.1.1 vs. uniprot
Match: A0A7C1W2F3_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C1W2F3_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 4.500e-6
Identity = 41/145 (28.28%), Postives = 68/145 (46.90%), Query Frame = 1
Query:    1 LFDPVMALIDDDVKTRWSLAAITDWTNGRRPQIPQKRPSARRGSPLQIGPVQCLEPRELAYAIHRYPEPAATSLERGEIANW----LKANDVQRAISLGIDEAGSNAAQAPP---PVLLAREAVRLDPVGPIRYRDLSFFPNGAG 414
            L +P   L+ D  + RW L  +  W +G R    Q++P+A+  +P +    +    R LA+A+ R    A   ++   +  W    LK  ++  AI  G+ E     A  P      L+ R  + LDP+ PIRY++L+   +G G
Sbjct:  260 LLEPSRGLMADTEEKRWGLEEMKSWISGNRQTPQQRKPAAKADTPFEFNGGEYTNARTLAWALFRNTGEALKVIKGKLLETWVRRGLKNPELGDAIE-GVVELAKIHASEPSGSDDSLICRICMILDPLAPIRYKELAINIDGFG 403          
BLAST of mRNA_P-wetherbeei_contig58736.1.1 vs. uniprot
Match: A0A7V7E7J1_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A7V7E7J1_9PROT)

HSP 1 Score: 54.3 bits (129), Expect = 1.390e-5
Identity = 42/144 (29.17%), Postives = 67/144 (46.53%), Query Frame = 1
Query:   31 DDVKTRWSLAAITDWTNGRR--PQIPQKRPSARRGSPLQIGPVQCLEPRELAYAIHRYPEPAATSLERGEIANWLKAN----DVQRAISLGIDEAGSNAAQAPPPVLLAREAVRLDPVGPIRYRDLSFFPNGAGSVIYAALLDG 444
            DD   RW+  ++  W +GRR  P + +    A R      G       RELA A+    E A   +  G +  WL+ +    D   A+   +   G+   + P  +L+A+  + LD   PIRY+ LS  P+G GS +  A+++G
Sbjct:   31 DDPHERWNNESLDLWLSGRRLSPLVAKIEKRAARDFTFNNGNYSTA--RELAIAMALNWEAAVPYIIDGRLELWLRRSLDNKDKASAVGGVVGTVGTGDKRLPNDILVAKICMILDSGAPIRYKGLSVMPDGIGSFLALAMVEG 172          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58736.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3D4MG60_9PROT5.250e-1129.68Protein kinase domain-containing protein n=1 Tax=R... [more]
W6KC60_MAGSQ3.320e-1033.76Uncharacterized protein n=1 Tax=Magnetospira sp. (... [more]
A0A8J2YST9_9PROT6.100e-1031.90Protein kinase domain-containing protein n=2 Tax=A... [more]
A0A7C1W2F3_9PROT4.500e-628.28Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A7V7E7J1_9PROT1.390e-529.17Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58736contigP-wetherbeei_contig58736:8..493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1121033.AUCF01000028_gene396
PFAMsPkinase
Model size486
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.24e-14
EggNOG OGsCOG0515@1|root,COG0515@2|Bacteria,1R4I9@1224|Proteobacteria,2U0GX@28211|Alphaproteobacteria,2JQ0G@204441|Rhodospirillales
Descriptionserine threonine protein kinase
Cds size471
COG categoryKLT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186868.8479445-UTR-P-wetherbeei_contig58736:7..221683186868.8479445-UTR-P-wetherbeei_contig58736:7..22Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58736 8..22 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186868.8608537-CDS-P-wetherbeei_contig58736:22..4931683186868.8608537-CDS-P-wetherbeei_contig58736:22..493Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58736 23..493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58736.1.1prot_P-wetherbeei_contig58736.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58736 23..493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58736.1.1

>prot_P-wetherbeei_contig58736.1.1 ID=prot_P-wetherbeei_contig58736.1.1|Name=mRNA_P-wetherbeei_contig58736.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
MALIDDDVKTRWSLAAITDWTNGRRPQIPQKRPSARRGSPLQIGPVQCLE
PRELAYAIHRYPEPAATSLERGEIANWLKANDVQRAISLGIDEAGSNAAQ
APPPVLLAREAVRLDPVGPIRYRDLSFFPNGAGSVIYAALLDGSRRQQFE
ELFTARL
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mRNA from alignment at P-wetherbeei_contig58736:8..493+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58736.1.1 ID=mRNA_P-wetherbeei_contig58736.1.1|Name=mRNA_P-wetherbeei_contig58736.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig58736:8..493+ (Phaeothamnion wetherbeei SAG_119_79)
CTGTTCGATCCGGTGATGGCGCTGATCGACGACGACGTGAAGACGCGCTG GTCGCTCGCGGCGATCACCGACTGGACCAACGGCCGCCGCCCGCAGATCC CGCAGAAGCGCCCGTCGGCGCGCCGCGGTTCGCCGCTGCAGATCGGCCCG GTCCAGTGCCTCGAGCCGCGCGAGCTCGCCTACGCGATCCACCGCTATCC CGAGCCCGCCGCCACGTCGCTCGAACGCGGCGAGATCGCGAACTGGCTCA AGGCGAACGACGTCCAGCGCGCGATCTCGCTGGGCATCGACGAAGCCGGC TCCAACGCCGCACAGGCGCCCCCGCCCGTGCTGCTGGCGCGCGAGGCGGT CCGTCTCGATCCTGTCGGCCCGATCCGCTACCGCGACCTGTCGTTCTTCC CCAACGGGGCGGGTTCGGTCATCTATGCCGCCCTGCTCGACGGCAGCCGG CGCCAGCAGTTCGAGGAACTCTTCACGGCGCGCCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58736:8..493+

>mRNA_P-wetherbeei_contig58736.1.1 ID=mRNA_P-wetherbeei_contig58736.1.1|Name=mRNA_P-wetherbeei_contig58736.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig58736:8..493+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCTGATCGACGACGACGTGAAGACGCGCTGGTCGCTCGCGGCGAT
CACCGACTGGACCAACGGCCGCCGCCCGCAGATCCCGCAGAAGCGCCCGT
CGGCGCGCCGCGGTTCGCCGCTGCAGATCGGCCCGGTCCAGTGCCTCGAG
CCGCGCGAGCTCGCCTACGCGATCCACCGCTATCCCGAGCCCGCCGCCAC
GTCGCTCGAACGCGGCGAGATCGCGAACTGGCTCAAGGCGAACGACGTCC
AGCGCGCGATCTCGCTGGGCATCGACGAAGCCGGCTCCAACGCCGCACAG
GCGCCCCCGCCCGTGCTGCTGGCGCGCGAGGCGGTCCGTCTCGATCCTGT
CGGCCCGATCCGCTACCGCGACCTGTCGTTCTTCCCCAACGGGGCGGGTT
CGGTCATCTATGCCGCCCTGCTCGACGGCAGCCGGCGCCAGCAGTTCGAG
GAACTCTTCACGGCGCGCCTC
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