mRNA_P-wetherbeei_contig58613.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58613.1.1
Unique NamemRNA_P-wetherbeei_contig58613.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58613.1.1 vs. uniprot
Match: A0A7C5N167_9DELT (Four helix bundle protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7C5N167_9DELT)

HSP 1 Score: 146 bits (368), Expect = 2.560e-43
Identity = 73/107 (68.22%), Postives = 84/107 (78.50%), Query Frame = 1
Query:    1 MHYRELMVWQRAMDAARETYRQVPLLPREETFGMRLQITRATVSIPANIAERWARESSRDTAHVLAIAHGSLADTEALLTRCEALGWFPAARTELLRSHLDGARRML 321
            MHYR+L+VW +AM+ ARE YR VP LP+EET+GMR QITR+ VSIPANIAE W RESS+D AH LAIA GSLA+TE LLT CE LGWFP + T  LR+ LD   RML
Sbjct:    1 MHYRKLIVWDKAMETAREIYRLVPRLPKEETYGMRSQITRSVVSIPANIAEGWTRESSKDKAHFLAIAQGSLAETETLLTLCEDLGWFPVSETATLRNLLDEVSRML 107          
BLAST of mRNA_P-wetherbeei_contig58613.1.1 vs. uniprot
Match: A0A7V8VU65_9BACT (Four helix bundle protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7V8VU65_9BACT)

HSP 1 Score: 146 bits (368), Expect = 2.560e-43
Identity = 74/107 (69.16%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    1 MHYRELMVWQRAMDAARETYRQVPLLPREETFGMRLQITRATVSIPANIAERWARESSRDTAHVLAIAHGSLADTEALLTRCEALGWFPAARTELLRSHLDGARRML 321
            MHYREL VW++AMD A+E YR  PLLPREET+GMR QITRA  SIPANIAE WARESSR+ A  L+IA GSLA+TE  LT CE +GWFPA  TELLRS L    +ML
Sbjct:    1 MHYRELTVWRKAMDLAKEVYRLAPLLPREETYGMRSQITRAAASIPANIAEGWARESSREKAQFLSIAQGSLAETETFLTLCEEIGWFPAKETELLRSLLTEVGKML 107          
BLAST of mRNA_P-wetherbeei_contig58613.1.1 vs. uniprot
Match: UPI001B8C1B11 (Four helix bundle protein n=1 Tax=Chloracidobacterium validum TaxID=2821543 RepID=UPI001B8C1B11)

HSP 1 Score: 144 bits (362), Expect = 2.040e-42
Identity = 74/107 (69.16%), Postives = 81/107 (75.70%), Query Frame = 1
Query:    1 MHYRELMVWQRAMDAARETYRQVPLLPREETFGMRLQITRATVSIPANIAERWARESSRDTAHVLAIAHGSLADTEALLTRCEALGWFPAARTELLRSHLDGARRML 321
            MHYRE M+WQ+AM AARE YR VP LPREET+GMR QITRA VSIPANIAE W RESS++ A  LAIA GSLA+ E LLT CE LGWFP  +T  LR  LD   RML
Sbjct:    1 MHYRETMLWQKAMQAAREVYRLVPRLPREETYGMRSQITRAVVSIPANIAEGWTRESSKEKAQFLAIAQGSLAEVETLLTLCEDLGWFPPDQTRTLRGLLDEVSRML 107          
BLAST of mRNA_P-wetherbeei_contig58613.1.1 vs. uniprot
Match: A0A6I6EGC6_THETI (Four helix bundle protein n=1 Tax=Thermochromatium tepidum ATCC 43061 TaxID=316276 RepID=A0A6I6EGC6_THETI)

HSP 1 Score: 140 bits (353), Expect = 5.240e-41
Identity = 67/108 (62.04%), Postives = 83/108 (76.85%), Query Frame = 1
Query:    1 MHYRELMVWQRAMDAARETYRQVPLLPREETFGMRLQITRATVSIPANIAERWARESSRDTAHVLAIAHGSLADTEALLTRCEALGWFPAARTELLRSHLDGARRMLA 324
            +HYRELMVWQ+AMD A+E YR  P LP+EET+GMR QITRA  S+PANIAE W RE+ +D AH LAIA GSLA+TE LLT CE LGWFP  +T+ LR  ++   ++L+
Sbjct:    3 LHYRELMVWQKAMDLAKEVYRLAPNLPKEETYGMRSQITRAATSVPANIAEGWTRETEKDRAHFLAIAQGSLAETETLLTLCEELGWFPVDKTQTLRGLMNETGKILS 110          
BLAST of mRNA_P-wetherbeei_contig58613.1.1 vs. uniprot
Match: A0A2A6RMF8_9CHLR (Uncharacterized protein n=1 Tax=Candidatus Viridilinea mediisalina TaxID=2024553 RepID=A0A2A6RMF8_9CHLR)

HSP 1 Score: 134 bits (336), Expect = 2.150e-38
Identity = 67/107 (62.62%), Postives = 80/107 (74.77%), Query Frame = 1
Query:    1 MHYRELMVWQRAMDAARETYRQVPLLPREETFGMRLQITRATVSIPANIAERWARESSRDTAHVLAIAHGSLADTEALLTRCEALGWFPAARTELLRSHLDGARRML 321
            MH++EL+VWQ+AM  ARE YR VP LPREET+GMR QITRA VS+PANIAE WARESSR+ A  LA+A GSLA+ E LL  CE +GWFP   TE L   ++   R+L
Sbjct:    2 MHFKELIVWQKAMSIAREVYRLVPHLPREETYGMRSQITRAAVSVPANIAEGWARESSREKAQFLAVAQGSLAELETLLMLCEQIGWFPVKETEELHRLMNEVGRIL 108          
BLAST of mRNA_P-wetherbeei_contig58613.1.1 vs. uniprot
Match: A0A6B1DB71_9CHLR (Four helix bundle protein n=1 Tax=Caldilineaceae bacterium SB0661_bin_32 TaxID=2605255 RepID=A0A6B1DB71_9CHLR)

HSP 1 Score: 133 bits (334), Expect = 3.840e-38
Identity = 67/107 (62.62%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    1 MHYRELMVWQRAMDAARETYRQVPLLPREETFGMRLQITRATVSIPANIAERWARESSRDTAHVLAIAHGSLADTEALLTRCEALGWFPAARTELLRSHLDGARRML 321
            M+YRE ++WQ+AM+AARE YR  P LP  E +GMR QITRA VSIPANIAE W RE+ +D AH LAIA GSLA+TE LLT CE LGWFP + T+  R  LD   R+L
Sbjct:    1 MYYRETILWQKAMEAAREIYRLTPRLPSTENYGMRSQITRAAVSIPANIAEGWTRETLKDKAHFLAIAQGSLAETETLLTLCEDLGWFPKSETKKFRGLLDEVSRIL 107          
BLAST of mRNA_P-wetherbeei_contig58613.1.1 vs. uniprot
Match: A0A1M7DUS8_9GAMM (Four helix bundle protein n=2 Tax=unclassified Rhodanobacter TaxID=2621553 RepID=A0A1M7DUS8_9GAMM)

HSP 1 Score: 131 bits (330), Expect = 1.510e-37
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = 1
Query:    1 MHYRELMVWQRAMDAARETYRQVPLLPREETFGMRLQITRATVSIPANIAERWARESSRDTAHVLAIAHGSLADTEALLTRCEALGWFPAARTELLRSHLDGARRM 318
            MHYRE +VW RAM+ ARE YR   LLPREE +GMR Q+TRA VS+P+NIAE W RES R+ A  LAIA GS+A+ E  +T CE LGWFP + TE +RS LD   RM
Sbjct:    1 MHYREAVVWNRAMEVAREIYRLTALLPREEMYGMRSQLTRAAVSVPSNIAEGWTRESKREKAQFLAIAQGSVAELETQVTLCEQLGWFPESETEAVRSALDQVSRM 106          
BLAST of mRNA_P-wetherbeei_contig58613.1.1 vs. uniprot
Match: A0A163WBN8_9BACT (Uncharacterized protein n=1 Tax=Candidatus Fermentibacter daniensis TaxID=1729713 RepID=A0A163WBN8_9BACT)

HSP 1 Score: 131 bits (330), Expect = 1.660e-37
Identity = 62/108 (57.41%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    1 MHYRELMVWQRAMDAARETYRQVPLLPREETFGMRLQITRATVSIPANIAERWARESSRDTAHVLAIAHGSLADTEALLTRCEALGWFPAARTELLRSHLDGARRMLA 324
            +HYREL VW++AM++A+E YR VP+LPREE +GMR QITRA  S+PANIAE W RES ++ A  L+IA GSLA+TE  LT CE +GWFPA +T  +R+ +    +ML+
Sbjct:    3 LHYRELTVWRKAMESAKEIYRLVPMLPREEIYGMRSQITRAAASVPANIAEGWTRESEKERAQFLSIAQGSLAETETFLTLCEEIGWFPAEKTVCVRNLITEVSKMLS 110          
BLAST of mRNA_P-wetherbeei_contig58613.1.1 vs. uniprot
Match: A0A7L5YVE8_9CHLR (Four helix bundle protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7L5YVE8_9CHLR)

HSP 1 Score: 130 bits (327), Expect = 4.460e-37
Identity = 68/107 (63.55%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 MHYRELMVWQRAMDAARETYRQVPLLPREETFGMRLQITRATVSIPANIAERWARESSRDTAHVLAIAHGSLADTEALLTRCEALGWFPAARTELLRSHLDGARRML 321
            +HY+ L+VWQ+AM+AARE YR  P LPREET+GMR QITR  VS+PANIAE WARES R+ A  LAIA   LA+ E LLT CE +GWFP A T  LR  LD   RML
Sbjct:    3 LHYKSLVVWQKAMEAAREVYRLAPRLPREETYGMRSQITRXMVSVPANIAEGWARESEREKAQFLAIAX-PLAEAETLLTLCEQVGWFPQAETRTLRGLLDEVGRML 108          
BLAST of mRNA_P-wetherbeei_contig58613.1.1 vs. uniprot
Match: UPI0018460CE9 (Four helix bundle protein n=1 Tax=Lysobacter sp. TaxID=72226 RepID=UPI0018460CE9)

HSP 1 Score: 130 bits (326), Expect = 5.790e-37
Identity = 62/107 (57.94%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    1 MHYRELMVWQRAMDAARETYRQVPLLPREETFGMRLQITRATVSIPANIAERWARESSRDTAHVLAIAHGSLADTEALLTRCEALGWFPAARTELLRSHLDGARRML 321
            MHY++ +VW++AM  A E YR  PLLPREE +G+R Q+TRA VS+P NIAE W RES R+ AH LAIAHGSL++ E L+T CE +GWFP A+T   R+ +D   RML
Sbjct:    1 MHYKDAVVWKKAMTVASEIYRLAPLLPREEVYGIRSQLTRAAVSVPCNIAEGWTRESMREKAHFLAIAHGSLSELETLVTLCEEIGWFPIAQTRDPRAVIDETSRML 107          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58613.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C5N167_9DELT2.560e-4368.22Four helix bundle protein n=1 Tax=Polyangiaceae ba... [more]
A0A7V8VU65_9BACT2.560e-4369.16Four helix bundle protein n=1 Tax=Gemmatimonadetes... [more]
UPI001B8C1B112.040e-4269.16Four helix bundle protein n=1 Tax=Chloracidobacter... [more]
A0A6I6EGC6_THETI5.240e-4162.04Four helix bundle protein n=1 Tax=Thermochromatium... [more]
A0A2A6RMF8_9CHLR2.150e-3862.62Uncharacterized protein n=1 Tax=Candidatus Viridil... [more]
A0A6B1DB71_9CHLR3.840e-3862.62Four helix bundle protein n=1 Tax=Caldilineaceae b... [more]
A0A1M7DUS8_9GAMM1.510e-3761.32Four helix bundle protein n=2 Tax=unclassified Rho... [more]
A0A163WBN8_9BACT1.660e-3757.41Uncharacterized protein n=1 Tax=Candidatus Ferment... [more]
A0A7L5YVE8_9CHLR4.460e-3763.55Four helix bundle protein n=1 Tax=Anaerolineae bac... [more]
UPI0018460CE95.790e-3757.94Four helix bundle protein n=1 Tax=Lysobacter sp. T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58613contigP-wetherbeei_contig58613:1..324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1121013.P873_11820
PFAMs23S_rRNA_IVP
Model size324
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.81e-23
EggNOG OGs2DNS7@1|root,32YWC@2|Bacteria,1QU0X@1224|Proteobacteria,1T5Q6@1236|Gammaproteobacteria,1XDDF@135614|Xanthomonadales
Description23S rRNA-intervening sequence protein
Cds size324
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186867.6556191-CDS-P-wetherbeei_contig58613:0..3241683186867.6556191-CDS-P-wetherbeei_contig58613:0..324Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58613 1..324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58613.1.1prot_P-wetherbeei_contig58613.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58613 1..324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58613.1.1

>prot_P-wetherbeei_contig58613.1.1 ID=prot_P-wetherbeei_contig58613.1.1|Name=mRNA_P-wetherbeei_contig58613.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
MHYRELMVWQRAMDAARETYRQVPLLPREETFGMRLQITRATVSIPANIA
ERWARESSRDTAHVLAIAHGSLADTEALLTRCEALGWFPAARTELLRSHL
DGARRMLA
back to top

mRNA from alignment at P-wetherbeei_contig58613:1..324-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58613.1.1 ID=mRNA_P-wetherbeei_contig58613.1.1|Name=mRNA_P-wetherbeei_contig58613.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig58613:1..324- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACTATCGCGAACTGATGGTCTGGCAACGGGCGATGGACGCTGCGCG AGAGACCTATCGCCAGGTGCCGTTACTCCCCAGGGAGGAGACCTTCGGCA TGCGGTTGCAGATCACTCGGGCCACCGTGTCGATCCCGGCCAACATCGCC GAACGATGGGCACGTGAGTCCTCCAGGGATACGGCACACGTCCTCGCGAT TGCTCATGGCTCACTCGCCGATACAGAGGCGCTCCTGACGCGCTGTGAAG CACTGGGATGGTTTCCGGCGGCGAGAACAGAACTCCTGCGAAGCCATCTG GACGGGGCCCGGCGGATGCTGGCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig58613:1..324-

>mRNA_P-wetherbeei_contig58613.1.1 ID=mRNA_P-wetherbeei_contig58613.1.1|Name=mRNA_P-wetherbeei_contig58613.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig58613:1..324- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACTATCGCGAACTGATGGTCTGGCAACGGGCGATGGACGCTGCGCG
AGAGACCTATCGCCAGGTGCCGTTACTCCCCAGGGAGGAGACCTTCGGCA
TGCGGTTGCAGATCACTCGGGCCACCGTGTCGATCCCGGCCAACATCGCC
GAACGATGGGCACGTGAGTCCTCCAGGGATACGGCACACGTCCTCGCGAT
TGCTCATGGCTCACTCGCCGATACAGAGGCGCTCCTGACGCGCTGTGAAG
CACTGGGATGGTTTCCGGCGGCGAGAACAGAACTCCTGCGAAGCCATCTG
GACGGGGCCCGGCGGATGCTGGCG
back to top