mRNA_P-wetherbeei_contig58111.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: A0A7J9WJ06_9ACTN (MFS transporter n=1 Tax=Nitriliruptorales bacterium TaxID=2497630 RepID=A0A7J9WJ06_9ACTN) HSP 1 Score: 62.0 bits (149), Expect = 2.060e-9 Identity = 27/71 (38.03%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 1 VAAVALMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCVGLLYGAAAGTGLAWMHT 213
V ++++R++ ++GRA+G++S G +AGF++GP+AFG LVD SY W L A AG W +
Sbjct: 391 VVMISVVRSLPPQTVGRATGLMSLGLYAGFASGPVAFGALVDATGSYRLGWTAAAALCAAGAGAAAGWRRS 461
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: UPI001E4A95F5 (MFS transporter n=3 Tax=unclassified Arthrobacter TaxID=235627 RepID=UPI001E4A95F5) HSP 1 Score: 58.9 bits (141), Expect = 2.460e-8 Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1
Query: 16 LMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCVGLLYGAAAGTGLAW 204
++R V +G ASG +S G +AGF+AGPLA G L++ ++ W+ +G Y A G GLA+
Sbjct: 324 VLREVPQQRVGAASGAVSLGMYAGFAAGPLAMGLLLEFSGGFLGGWLAIGGFYLACVGIGLAY 386
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: A0A4Q8TAT2_9MICC (MFS transporter n=2 Tax=Arthrobacter sp. S41 TaxID=2509721 RepID=A0A4Q8TAT2_9MICC) HSP 1 Score: 56.6 bits (135), Expect = 1.610e-7 Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 1
Query: 13 ALMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCVGLLYGAAAGTGL 198
AL+R V + +G ASGI+S GQF GF+ GPLA G LV + W+CV +Y GL
Sbjct: 326 ALLRAVPANRLGSASGIVSAGQFGGFTVGPLAMGLLVGSAGGFTVGWICVIGVYLCCTALGL 387
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: A0A4Y4DV73_GLUUR (MFS domain-containing protein n=1 Tax=Glutamicibacter uratoxydans TaxID=43667 RepID=A0A4Y4DV73_GLUUR) HSP 1 Score: 56.2 bits (134), Expect = 2.200e-7 Identity = 25/62 (40.32%), Postives = 37/62 (59.68%), Query Frame = 1
Query: 13 ALMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCVGLLYGAAAGTGL 198
AL+R + + +G ASGI++ GQF GF+ GPLA G L+ + A W+ V +Y A G+
Sbjct: 333 ALLRAIPASRMGSASGIVTAGQFGGFTVGPLAMGMLISSSGGFAAGWIAVICIYTACTALGI 394
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: UPI0008388A02 (MFS transporter n=1 Tax=Paeniglutamicibacter antarcticus TaxID=494023 RepID=UPI0008388A02) HSP 1 Score: 55.8 bits (133), Expect = 3.010e-7 Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1
Query: 13 ALMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCVGLLYGAAAGTGL 198
AL+R+V + S+G A+G++S GQF GF+ GPLA G L+ + A W+ V L+Y GL
Sbjct: 333 ALLRSVPAVSMGSATGMVSAGQFGGFTVGPLAMGALIGSPGGFTAGWIAVALVYLTCVLLGL 394
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: UPI001AED86F5 (MFS transporter n=3 Tax=Arthrobacter jiangjiafuii TaxID=2817475 RepID=UPI001AED86F5) HSP 1 Score: 55.5 bits (132), Expect = 4.130e-7 Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 1
Query: 1 VAAVALMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCVGLLYGAAAGTGLAWMHTCPRPS 228
V A++R V+ +G A+G++S G +AGF+AGPLA G L+ ++A W+ VG Y GL +H P+
Sbjct: 339 VVMAAVLREVEPARVGAATGVVSLGMYAGFAAGPLAMGLLLQHSGGFLAGWIFVGSGYLLCMALGLV-LHRTAAPA 413
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: A0A2A3Y6I2_9MICC (Arabinose ABC transporter permease n=4 Tax=Micrococcaceae TaxID=1268 RepID=A0A2A3Y6I2_9MICC) HSP 1 Score: 55.1 bits (131), Expect = 5.610e-7 Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 1
Query: 13 ALMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCVGLLYGAAAGTGL 198
AL+R V + S+G ++GI+S GQFAGF+ GPLA G L+ + W+ V +Y G GL
Sbjct: 319 ALLRAVPAASLGSSTGIVSAGQFAGFTFGPLAMGALISSPGGFTTGWLAVTGVYLCCVGLGL 380
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: A0A6H0SNL4_9MICC (MFS transporter n=2 Tax=Glutamicibacter mishrai TaxID=1775880 RepID=A0A6H0SNL4_9MICC) HSP 1 Score: 54.3 bits (129), Expect = 1.050e-6 Identity = 24/50 (48.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query: 13 ALMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCV 162
AL+R V + +G +SG++S GQF GF+ GPLA G LV + A W+CV
Sbjct: 326 ALLRVVPANRLGSSSGLVSAGQFGGFTVGPLAMGLLVGSAGGFTAGWICV 375
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: A0A0V8HKJ8_9MICC (Arabinose ABC transporter permease n=1 Tax=Arthrobacter sp. NIO-1057 TaxID=993071 RepID=A0A0V8HKJ8_9MICC) HSP 1 Score: 54.3 bits (129), Expect = 1.050e-6 Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1
Query: 16 LMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCV 162
L+R V + +G ASG++S GQF GF+ GPLA G LV + A W+CV
Sbjct: 338 LLRVVPANRLGSASGLVSAGQFGGFTVGPLAMGLLVGSAGGFTAGWICV 386
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: UPI001865FC89 (hypothetical protein n=2 Tax=Glutamicibacter arilaitensis TaxID=256701 RepID=UPI001865FC89) HSP 1 Score: 52.8 bits (125), Expect = 1.340e-6 Identity = 25/62 (40.32%), Postives = 37/62 (59.68%), Query Frame = 1
Query: 13 ALMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCVGLLYGAAAGTGL 198
AL+R + + ++G ASGI+S GQF GF+ GP A G LV + A W+ V +Y + G+
Sbjct: 96 ALLRAIPAKNLGSASGIVSAGQFGGFTVGPAAMGLLVGSAGGFTAGWITVTGIYLCSTFLGI 157 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig58111.2.1 >prot_P-wetherbeei_contig58111.2.1 ID=prot_P-wetherbeei_contig58111.2.1|Name=mRNA_P-wetherbeei_contig58111.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp MRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCVGLback to top mRNA from alignment at P-wetherbeei_contig58111:270..506- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig58111.2.1 ID=mRNA_P-wetherbeei_contig58111.2.1|Name=mRNA_P-wetherbeei_contig58111.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig58111:270..506- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig58111:270..506- >mRNA_P-wetherbeei_contig58111.2.1 ID=mRNA_P-wetherbeei_contig58111.2.1|Name=mRNA_P-wetherbeei_contig58111.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig58111:270..506- (Phaeothamnion wetherbeei SAG_119_79)back to top |