mRNA_P-wetherbeei_contig58111.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58111.2.1
Unique NamemRNA_P-wetherbeei_contig58111.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: A0A7J9WJ06_9ACTN (MFS transporter n=1 Tax=Nitriliruptorales bacterium TaxID=2497630 RepID=A0A7J9WJ06_9ACTN)

HSP 1 Score: 62.0 bits (149), Expect = 2.060e-9
Identity = 27/71 (38.03%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 VAAVALMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCVGLLYGAAAGTGLAWMHT 213
            V  ++++R++   ++GRA+G++S G +AGF++GP+AFG LVD   SY   W     L  A AG    W  +
Sbjct:  391 VVMISVVRSLPPQTVGRATGLMSLGLYAGFASGPVAFGALVDATGSYRLGWTAAAALCAAGAGAAAGWRRS 461          
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: UPI001E4A95F5 (MFS transporter n=3 Tax=unclassified Arthrobacter TaxID=235627 RepID=UPI001E4A95F5)

HSP 1 Score: 58.9 bits (141), Expect = 2.460e-8
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1
Query:   16 LMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCVGLLYGAAAGTGLAW 204
            ++R V    +G ASG +S G +AGF+AGPLA G L++    ++  W+ +G  Y A  G GLA+
Sbjct:  324 VLREVPQQRVGAASGAVSLGMYAGFAAGPLAMGLLLEFSGGFLGGWLAIGGFYLACVGIGLAY 386          
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: A0A4Q8TAT2_9MICC (MFS transporter n=2 Tax=Arthrobacter sp. S41 TaxID=2509721 RepID=A0A4Q8TAT2_9MICC)

HSP 1 Score: 56.6 bits (135), Expect = 1.610e-7
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 1
Query:   13 ALMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCVGLLYGAAAGTGL 198
            AL+R V +  +G ASGI+S GQF GF+ GPLA G LV     +   W+CV  +Y      GL
Sbjct:  326 ALLRAVPANRLGSASGIVSAGQFGGFTVGPLAMGLLVGSAGGFTVGWICVIGVYLCCTALGL 387          
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: A0A4Y4DV73_GLUUR (MFS domain-containing protein n=1 Tax=Glutamicibacter uratoxydans TaxID=43667 RepID=A0A4Y4DV73_GLUUR)

HSP 1 Score: 56.2 bits (134), Expect = 2.200e-7
Identity = 25/62 (40.32%), Postives = 37/62 (59.68%), Query Frame = 1
Query:   13 ALMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCVGLLYGAAAGTGL 198
            AL+R + +  +G ASGI++ GQF GF+ GPLA G L+     + A W+ V  +Y A    G+
Sbjct:  333 ALLRAIPASRMGSASGIVTAGQFGGFTVGPLAMGMLISSSGGFAAGWIAVICIYTACTALGI 394          
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: UPI0008388A02 (MFS transporter n=1 Tax=Paeniglutamicibacter antarcticus TaxID=494023 RepID=UPI0008388A02)

HSP 1 Score: 55.8 bits (133), Expect = 3.010e-7
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   13 ALMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCVGLLYGAAAGTGL 198
            AL+R+V + S+G A+G++S GQF GF+ GPLA G L+     + A W+ V L+Y      GL
Sbjct:  333 ALLRSVPAVSMGSATGMVSAGQFGGFTVGPLAMGALIGSPGGFTAGWIAVALVYLTCVLLGL 394          
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: UPI001AED86F5 (MFS transporter n=3 Tax=Arthrobacter jiangjiafuii TaxID=2817475 RepID=UPI001AED86F5)

HSP 1 Score: 55.5 bits (132), Expect = 4.130e-7
Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 1
Query:    1 VAAVALMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCVGLLYGAAAGTGLAWMHTCPRPS 228
            V   A++R V+   +G A+G++S G +AGF+AGPLA G L+     ++A W+ VG  Y      GL  +H    P+
Sbjct:  339 VVMAAVLREVEPARVGAATGVVSLGMYAGFAAGPLAMGLLLQHSGGFLAGWIFVGSGYLLCMALGLV-LHRTAAPA 413          
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: A0A2A3Y6I2_9MICC (Arabinose ABC transporter permease n=4 Tax=Micrococcaceae TaxID=1268 RepID=A0A2A3Y6I2_9MICC)

HSP 1 Score: 55.1 bits (131), Expect = 5.610e-7
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   13 ALMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCVGLLYGAAAGTGL 198
            AL+R V + S+G ++GI+S GQFAGF+ GPLA G L+     +   W+ V  +Y    G GL
Sbjct:  319 ALLRAVPAASLGSSTGIVSAGQFAGFTFGPLAMGALISSPGGFTTGWLAVTGVYLCCVGLGL 380          
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: A0A6H0SNL4_9MICC (MFS transporter n=2 Tax=Glutamicibacter mishrai TaxID=1775880 RepID=A0A6H0SNL4_9MICC)

HSP 1 Score: 54.3 bits (129), Expect = 1.050e-6
Identity = 24/50 (48.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:   13 ALMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCV 162
            AL+R V +  +G +SG++S GQF GF+ GPLA G LV     + A W+CV
Sbjct:  326 ALLRVVPANRLGSSSGLVSAGQFGGFTVGPLAMGLLVGSAGGFTAGWICV 375          
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: A0A0V8HKJ8_9MICC (Arabinose ABC transporter permease n=1 Tax=Arthrobacter sp. NIO-1057 TaxID=993071 RepID=A0A0V8HKJ8_9MICC)

HSP 1 Score: 54.3 bits (129), Expect = 1.050e-6
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1
Query:   16 LMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCV 162
            L+R V +  +G ASG++S GQF GF+ GPLA G LV     + A W+CV
Sbjct:  338 LLRVVPANRLGSASGLVSAGQFGGFTVGPLAMGLLVGSAGGFTAGWICV 386          
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Match: UPI001865FC89 (hypothetical protein n=2 Tax=Glutamicibacter arilaitensis TaxID=256701 RepID=UPI001865FC89)

HSP 1 Score: 52.8 bits (125), Expect = 1.340e-6
Identity = 25/62 (40.32%), Postives = 37/62 (59.68%), Query Frame = 1
Query:   13 ALMRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCVGLLYGAAAGTGL 198
            AL+R + + ++G ASGI+S GQF GF+ GP A G LV     + A W+ V  +Y  +   G+
Sbjct:   96 ALLRAIPAKNLGSASGIVSAGQFGGFTVGPAAMGLLVGSAGGFTAGWITVTGIYLCSTFLGI 157          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58111.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A7J9WJ06_9ACTN2.060e-938.03MFS transporter n=1 Tax=Nitriliruptorales bacteriu... [more]
UPI001E4A95F52.460e-841.27MFS transporter n=3 Tax=unclassified Arthrobacter ... [more]
A0A4Q8TAT2_9MICC1.610e-745.16MFS transporter n=2 Tax=Arthrobacter sp. S41 TaxID... [more]
A0A4Y4DV73_GLUUR2.200e-740.32MFS domain-containing protein n=1 Tax=Glutamicibac... [more]
UPI0008388A023.010e-743.55MFS transporter n=1 Tax=Paeniglutamicibacter antar... [more]
UPI001AED86F54.130e-736.84MFS transporter n=3 Tax=Arthrobacter jiangjiafuii ... [more]
A0A2A3Y6I2_9MICC5.610e-743.55Arabinose ABC transporter permease n=4 Tax=Microco... [more]
A0A6H0SNL4_9MICC1.050e-648.00MFS transporter n=2 Tax=Glutamicibacter mishrai Ta... [more]
A0A0V8HKJ8_9MICC1.050e-648.98Arabinose ABC transporter permease n=1 Tax=Arthrob... [more]
UPI001865FC891.340e-640.32hypothetical protein n=2 Tax=Glutamicibacter arila... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58111contigP-wetherbeei_contig58111:270..506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1096756.ATKN01000019_gene1532
PFAMsMFS_1
Model size237
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.3e-06
EggNOG OGsCOG0477@1|root,COG2814@2|Bacteria,2IFXN@201174|Actinobacteria,1W8R9@1268|Micrococcaceae
DescriptionMajor Facilitator Superfamily
Cds size219
COG categoryEGP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186861.2460127-CDS-P-wetherbeei_contig58111:269..4881683186861.2460127-CDS-P-wetherbeei_contig58111:269..488Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58111 270..488 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186861.2601438-UTR-P-wetherbeei_contig58111:488..5061683186861.2601438-UTR-P-wetherbeei_contig58111:488..506Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58111 489..506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58111.2.1prot_P-wetherbeei_contig58111.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58111 270..488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58111.2.1

>prot_P-wetherbeei_contig58111.2.1 ID=prot_P-wetherbeei_contig58111.2.1|Name=mRNA_P-wetherbeei_contig58111.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp
MRTVDSPSIGRASGILSFGQFAGFSAGPLAFGYLVDVGNSYVAAWVCVGL
LYGAAAGTGLAWMHTCPRPSRV*
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mRNA from alignment at P-wetherbeei_contig58111:270..506-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58111.2.1 ID=mRNA_P-wetherbeei_contig58111.2.1|Name=mRNA_P-wetherbeei_contig58111.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig58111:270..506- (Phaeothamnion wetherbeei SAG_119_79)
GTTGCTGCCGTTGCTCTGATGCGCACCGTGGACTCTCCTTCCATTGGCCG CGCAAGCGGCATATTATCTTTTGGTCAGTTTGCCGGATTCTCCGCCGGCC CTCTCGCGTTCGGATACTTGGTGGATGTAGGCAATTCATACGTAGCTGCT TGGGTCTGTGTGGGTCTGCTGTACGGGGCCGCGGCAGGAACCGGGCTCGC GTGGATGCACACGTGTCCTCGTCCATCCCGGGTGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58111:270..506-

>mRNA_P-wetherbeei_contig58111.2.1 ID=mRNA_P-wetherbeei_contig58111.2.1|Name=mRNA_P-wetherbeei_contig58111.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig58111:270..506- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCACCGTGGACTCTCCTTCCATTGGCCGCGCAAGCGGCATATTATC
TTTTGGTCAGTTTGCCGGATTCTCCGCCGGCCCTCTCGCGTTCGGATACT
TGGTGGATGTAGGCAATTCATACGTAGCTGCTTGGGTCTGTGTGGGTCTG
CTGTACGGGGCCGCGGCAGGAACCGGGCTCGCGTGGATGCACACGTGTCC
TCGTCCATCCCGGGTGTAG
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