mRNA_P-wetherbeei_contig58085.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58085.1.1
Unique NamemRNA_P-wetherbeei_contig58085.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58085.1.1 vs. uniprot
Match: A0A836CBS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS2_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.870e-23
Identity = 56/110 (50.91%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    1 MVHVGSIVVAIGMLLLLHAGHSTAHFRQFVVVAPGEGEARAADRPPLDAVVEAIGGFLISAIGVVWAAGKLHPIKGR---GKGMDSAQARPDFDMFQTRARSLRMRLAAM 321
            MV +G+IV  +G+L+LLHAG+S AH+RQF+V A GE  A A D PPLDAVVE I GFL+   GVV AAG++ P++G    G+  D+ +  P F +F  RA  LR R  A+
Sbjct:    1 MVKLGTIVAGLGLLVLLHAGYSAAHYRQFIVAAEGEA-APAEDAPPLDAVVETIVGFLLCVAGVVSAAGQMLPVRGPAGGGRSADAHEGLPGFAVFSHRAVQLRRRTQAL 109          
BLAST of mRNA_P-wetherbeei_contig58085.1.1 vs. uniprot
Match: D8LTM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM7_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 4.830e-21
Identity = 51/109 (46.79%), Postives = 74/109 (67.89%), Query Frame = 1
Query:    1 MVHVGSIVVAIGMLLLLHAGHSTAHFRQFVVVAPGEGEARAADRPPLDAVVEAIGGFLISAIGVVWAAGKLHPIKGR---GKGMDSAQARPDFDMFQTRARSLRMRLAA 318
            MVH+G++V A G+L+LLHAG+S AHF+QF   +   G     D  PLDA +EA+ GF +   GV+++A  L PIKG    GK +DSA++  +F++F+ R RSLR R+A+
Sbjct:    1 MVHLGTVVSAAGLLILLHAGYSAAHFQQFKKPSSALGGG-GGDSAPLDAALEALVGFFVCVFGVLYSADALLPIKGAAGGGKSLDSAESTREFEVFEHRGRSLRRRVAS 108          
BLAST of mRNA_P-wetherbeei_contig58085.1.1 vs. uniprot
Match: A0A5D6XQS2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQS2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.230e-10
Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = 1
Query:   13 GSIVVAIGMLLLLHAGHSTAHFRQFVVVAPGEGEARAADRPPLDAVVEAIGGFLISAIGVVWAAGKLHPIKGR----GKGMDSAQARPDFDMFQTRARSLRMRLAA 318
            G + +AIG LLLLHAG+ +  + ++V +A    E   A  PP + V+E +  F IS  GV+  AG+L PI+      G+ + +  + PDF +F  R ++L  R+AA
Sbjct:    5 GKLFIAIGSLLLLHAGYYSVKYAEYVKLA----EVTDAKLPPTEVVLELVLAFAISLAGVLVTAGELLPIRSNKRLHGRSLATVISSPDFHVFNHRGKALHKRIAA 106          
BLAST of mRNA_P-wetherbeei_contig58085.1.1 vs. uniprot
Match: G4ZTE2_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZTE2_PHYSP)

HSP 1 Score: 61.6 bits (148), Expect = 4.560e-10
Identity = 34/104 (32.69%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   13 GSIVVAIGMLLLLHAGHSTAHFRQFVVVAPGEGEARAADRPPLDAVVEAIGGFLISAIGVVWAAGKLHPIKGR----GKGMDSAQARPDFDMFQTRARSLRMRL 312
            G +++A+G LLL+HAG+ +  +  +V +A    E   A  PP + VVE +  FLIS +GV+  +G++ PI+       + + +  + PDF +F  R ++L  R+
Sbjct:    5 GKLLIAVGALLLVHAGYYSVQYESYVKLA----ETADAQMPPFEVVVELVASFLISLVGVLLTSGEIMPIRSNDAMHSRSLATVVSSPDFYVFNHRGKALHKRI 104          
BLAST of mRNA_P-wetherbeei_contig58085.1.1 vs. uniprot
Match: H3H2C3_PHYRM (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3H2C3_PHYRM)

HSP 1 Score: 59.3 bits (142), Expect = 3.620e-9
Identity = 34/104 (32.69%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   13 GSIVVAIGMLLLLHAGHSTAHFRQFVVVAPGEGEARAADRPPLDAVVEAIGGFLISAIGVVWAAGKLHPIKGR----GKGMDSAQARPDFDMFQTRARSLRMRL 312
            G +++A+G LLL+HAG+ +  +  +V +     E   A  PP + VVE +  FLIS +GV+  +G+L PI+       + + +  + PDF +F  R ++L  R+
Sbjct:    5 GKLLIAVGALLLVHAGYYSVQYESYVKLT----ETADAQMPPFEVVVELVVSFLISLVGVLLTSGELLPIRSNDAMHSRSLATVISSPDFHVFNHRGKALHKRV 104          
BLAST of mRNA_P-wetherbeei_contig58085.1.1 vs. uniprot
Match: W2HJX6_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2HJX6_PHYPR)

HSP 1 Score: 53.1 bits (126), Expect = 6.400e-7
Identity = 27/75 (36.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 MVHVGSIVVAIGMLLLLHAGHSTAHFRQFVVVAPGEGEARAADRPPLDAVVEAIGGFLISAIGVVWAAGKLHPIK 225
            MV  G +++A+G LLL+HAG+ +  +  +V +     E   A  PP + VVE +  FL+S +GV+  +G++ PI+
Sbjct:    1 MVFFGKLLIAVGTLLLVHAGYYSVQYESYVKLT----ETADAQMPPFEVVVELVAAFLVSLVGVLLTSGEILPIR 71          
BLAST of mRNA_P-wetherbeei_contig58085.1.1 vs. uniprot
Match: A0A484EJ94_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EJ94_BRELC)

HSP 1 Score: 51.6 bits (122), Expect = 3.520e-6
Identity = 34/105 (32.38%), Postives = 58/105 (55.24%), Query Frame = 1
Query:   10 VGSIVVAIGMLLLLHAGHSTAHFRQFVVVAPGEGEARAADRPPLDAVVEAIGGFLISAIGVVWAAGKLHPIKG----RGKGMDSAQARPDFDMFQTRARSLRMRL 312
            VG +++A+G LLL+HAG+ +  +  +V +     E   A  PP + V+E    F++S  GV+  +G+L PI+     + + + S  + PDF +F  R  +L  RL
Sbjct:    4 VGKLLIAVGALLLVHAGYYSVQYEFYVKLT----ETVDAPMPPYEVVIELGIAFVLSLAGVLLTSGELLPIRSNDAMQSRALASMVSSPDFYVFNHRGAALHKRL 104          
BLAST of mRNA_P-wetherbeei_contig58085.1.1 vs. uniprot
Match: A0A0W8CPY7_PHYNI (Membrane magnesium transporter 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CPY7_PHYNI)

HSP 1 Score: 52.0 bits (123), Expect = 4.340e-6
Identity = 39/132 (29.55%), Postives = 64/132 (48.48%), Query Frame = 1
Query:    1 MVHVGSIVVAIGMLLLLHAGH----------------STAHFRQFVVV---APGEG-----EARAADRPPLDAVVEAIGGFLISAIGVVWAAGKLHPIKGR----GKGMDSAQARPDFDMFQTRARSLRMRL 312
            MV  G +++A+G LLL+HAG+                S   +R+F  V    P E      E   A  PP + VVE +  FL+S +GV+  +G++ PI+       + + +  + PDF +F  R ++L  R+
Sbjct:    1 MVFFGKLLIAVGTLLLVHAGYYSVQCTLLRFLFPTLSSCISYRRFDAVNSIQPDESYVKLTETADAQMPPFEVVVELVAAFLVSLVGVLLTSGEILPIRSNDALHSRSLATVISSPDFHVFNHRGKALHKRV 132          
BLAST of mRNA_P-wetherbeei_contig58085.1.1 vs. uniprot
Match: A0A1W0A623_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A623_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.580e-5
Identity = 35/103 (33.98%), Postives = 52/103 (50.49%), Query Frame = 1
Query:   19 IVVAIGMLLLLHAGHSTAHFRQFVVVAPGEGEARAADRPPLDAVVEAIGGFLISAIGVVWAAGKLHPIKG----RGKGMDSAQARPDFDMFQTRARSLRMRLA 315
            ++VAIG +LL+HAG+ T  +  +V +A    E   A  PPL A +E    FL   +GV   AG   PI+       K  D   + P+F +F  R + L+ + A
Sbjct:    5 LLVAIGAVLLVHAGYYTVQYEAYVKLA----EVSDASIPPLAAKLELAASFLFFLVGVASLAGDFVPIRSTEFFNNKSFDWVVSNPEFAVFNHRGKYLQKKKA 103          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58085.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A836CBS2_9STRA2.870e-2350.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LTM7_ECTSI4.830e-2146.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A5D6XQS2_9STRA3.230e-1036.79Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
G4ZTE2_PHYSP4.560e-1032.69Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
H3H2C3_PHYRM3.620e-932.69Uncharacterized protein n=17 Tax=Phytophthora TaxI... [more]
W2HJX6_PHYPR6.400e-736.00Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A484EJ94_BRELC3.520e-632.38Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A0W8CPY7_PHYNI4.340e-629.55Membrane magnesium transporter 1 n=1 Tax=Phytophth... [more]
A0A1W0A623_9STRA2.580e-533.98Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58085contigP-wetherbeei_contig58085:130..459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo138893
PFAMsMMgT
Model size330
Max annot lvl4776|Peronosporales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue7.48e-11
EggNOG OGsKOG3918@1|root,2S1Q8@2759|Eukaryota,3QG1V@4776|Peronosporales
Ec32 ortholog descriptionMagnesium transporter
Ec32 orthologEc-28_003510.1
DescriptionMembrane magnesium transporter
Cds size330
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186860.817801-CDS-P-wetherbeei_contig58085:129..4591683186860.817801-CDS-P-wetherbeei_contig58085:129..459Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58085 130..459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58085.1.1prot_P-wetherbeei_contig58085.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58085 130..459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58085.1.1

>prot_P-wetherbeei_contig58085.1.1 ID=prot_P-wetherbeei_contig58085.1.1|Name=mRNA_P-wetherbeei_contig58085.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
MVHVGSIVVAIGMLLLLHAGHSTAHFRQFVVVAPGEGEARAADRPPLDAV
VEAIGGFLISAIGVVWAAGKLHPIKGRGKGMDSAQARPDFDMFQTRARSL
RMRLAAMGA*
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mRNA from alignment at P-wetherbeei_contig58085:130..459-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58085.1.1 ID=mRNA_P-wetherbeei_contig58085.1.1|Name=mRNA_P-wetherbeei_contig58085.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig58085:130..459- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTCACGTCGGCAGCATCGTGGTCGCCATTGGAATGCTTTTGCTTCT GCACGCCGGCCACTCGACGGCGCACTTCCGGCAGTTCGTCGTGGTCGCGC CCGGAGAGGGCGAGGCTCGGGCGGCAGATCGGCCGCCGTTAGACGCGGTA GTCGAAGCAATAGGAGGCTTTCTCATCTCGGCGATCGGCGTCGTCTGGGC TGCGGGCAAGCTTCACCCGATCAAGGGCCGAGGCAAGGGCATGGACTCCG CCCAGGCGCGCCCCGACTTCGACATGTTCCAGACGCGCGCCAGGAGCCTA CGGATGCGATTGGCGGCAATGGGGGCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58085:130..459-

>mRNA_P-wetherbeei_contig58085.1.1 ID=mRNA_P-wetherbeei_contig58085.1.1|Name=mRNA_P-wetherbeei_contig58085.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig58085:130..459- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTCACGTCGGCAGCATCGTGGTCGCCATTGGAATGCTTTTGCTTCT
GCACGCCGGCCACTCGACGGCGCACTTCCGGCAGTTCGTCGTGGTCGCGC
CCGGAGAGGGCGAGGCTCGGGCGGCAGATCGGCCGCCGTTAGACGCGGTA
GTCGAAGCAATAGGAGGCTTTCTCATCTCGGCGATCGGCGTCGTCTGGGC
TGCGGGCAAGCTTCACCCGATCAAGGGCCGAGGCAAGGGCATGGACTCCG
CCCAGGCGCGCCCCGACTTCGACATGTTCCAGACGCGCGCCAGGAGCCTA
CGGATGCGATTGGCGGCAATGGGGGCATGA
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