mRNA_P-wetherbeei_contig5801.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5801.2.1 vs. uniprot
Match: A0A7S4D790_HETAK (tRNA pseudouridine synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D790_HETAK) HSP 1 Score: 115 bits (288), Expect = 1.680e-25 Identity = 72/184 (39.13%), Postives = 89/184 (48.37%), Query Frame = 2
Query: 1031 YRAPPARLAALRAALKQLEGTRNFHNYTAKRRAGDPACHRYIISTEVGEPFVVAGGDGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSSGSSHGDGGXXXXXXXXXXGLEWAAITVTGQSFLLHQIRKMVAVATDVARGGCSAADVARTFGNVKVXXAPAPGAGLFLDMLFFDEYNRNLATE 1582
YRAPP +LAAL +AL GT NFHN+T++R A D +CHRYI+S + GEP+V HG EW +TV GQSFLL+QIRK+VA+A VARG + V K APG GL+LD LFFD YN+NLA +
Sbjct: 27 YRAPPEKLAALASALAGYRGTHNFHNFTSRRAATDKSCHRYIMSFDTGEPWV----------------------------------------DDHGT--------------EWVCLTVLGQSFLLNQIRKLVALAVQVARGAQTRGAVRTALSKKKHCLPMAPGDGLYLDSLFFDAYNKNLAKD 156
BLAST of mRNA_P-wetherbeei_contig5801.2.1 vs. uniprot
Match: A0A835YJ34_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ34_9STRA) HSP 1 Score: 110 bits (274), Expect = 2.320e-21 Identity = 163/532 (30.64%), Postives = 199/532 (37.41%), Query Frame = 2
Query: 380 GGEA--------AMTAAINARLPPAVRVMDVRRVTGSFDARNACTRRRYRYLLPTALLMPRAEAAALLGRAEAMAAGGEASEXXXXXXXXXXXXXXEASXXXXEVVAXXXXXEEMVVERVSAEFGAAATNRAATANGDTAVKHREQGTGGGEAM---------ANNXXXXXXXXXXXXXXXXXXAGTSRCGRSRGVGGSICDDXXXXXXXXXXGCG-------------KYALPPAVRTAAFAELAAYRAPPARLAALRAALKQLEGTRNFHNYTAKRRAGDPACHRYIISTEVGEPFVVAGGDGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSSGSSHGDGGXXXXXXXXXXGLEWAAITVTGQSFLLHQIRKMVAVATDVARGGCSAADVARTFGNVKVXXAPAPGAGLFLDMLFFDEYNRNLATETGRRPLRWGAESEPGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNATEEWVPDAADAASAAAVDAFRRERIVGHIVRSPAARARFVGWMDAMRHSPPNYA 1885
GGEA A+ +NA LP A+RV+ V RVTG F+A+NACT RRY YLLPT L LL A+A A S XXXXXX X V A + +A+ G G A XXXXXXXXXXXX XXXXXXX G G ++ PAV +L +R P +LA LR L GT+N+HNYT +R A DP+C R + S GEPFV G+EW ++V GQSF+LHQIRKMVA A DV R S D+ R+ + AP GLFLD LFF Y R+GA +AT + + A+AA V A R +RIV HIV AA +F W+D M P NY+
Sbjct: 197 GGEAEDEAAQHEAIRTGVNAHLPDAIRVLKVARVTGGFNAKNACTGRRYAYLLPTCTLAAPEYIDGLLAEAKAWEASQPRSAGDNVDVAAXXXXXXXXXXAAPMAVVEPAENPAXXXXXXXXXXXXXXXXVTAASADQSALPGSSHGNGXXXXXXXXXXXXXXAGTNATAATXXXXXXXXXXXXXXXXXXXXXXXXAPXXXXXXXXXXXXEREGAGXXXXXXXPEGEEKRWLSSPAVIARVAEKLRTFRITPEKLARLREVLALFRGTKNYHNYTIRRAATDPSCSRVMRSFTAGEPFV-------------------------------------------------------RGGVEWVLLSVEGQSFMLHQIRKMVATAVDVVRAQASVEDMQRSLTQAHMILGLAPSKGLFLDKLFFSMYEE-----------RYGAA----------------------------------DATSLKCREGS--AAAARVTAMR-DRIVSHIVDGEAAHLQFCAWLDYMSKFPKNYS 625
BLAST of mRNA_P-wetherbeei_contig5801.2.1 vs. uniprot
Match: D8LBC7_ECTSI (tRNA Pseudouridine Synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBC7_ECTSI) HSP 1 Score: 107 bits (268), Expect = 1.240e-20 Identity = 112/439 (25.51%), Postives = 155/439 (35.31%), Query Frame = 2
Query: 341 STQLICLKLAYPDGGEAAMTAAINARLPPAVRVMDVRRVTGSFDARNACTRRRYRYLLPTALLMPRAEAAALLGRA----EAMAAGGEASEXXXXXXXXXXXXXXEASXXXXEVVAXXXXXEEMVVERVSAEFGAAATNRAATANGDTAVKHREQGTGGGEAMANNXXXXXXXXXXXXXXXXXXAGTSRCGRSRGVGGSICDDXXXXXXXXXXGCGKYALPPAVRTAAFA------------ELAAYRAPPARLAALRAALKQLEGTRNFHNYTAKRRAGDPACHRYIISTEVGEPFVVAGGDGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSSGSSHGDGGXXXXXXXXXXGLEWAAITVTGQSFLLHQIRKMVAVATDVARGGCSAADVARTFGNVKVXXAPAPGAGLFLDMLFFDEYNRNLATETGR-RPLRW 1606
+ Q+I +KL Y + GE IN LP +R +D+RR SFD+R C+ RRY Y++PT +L P+A L A A A GG++S S + +A GA + A T A + + GRS G DD G G +R AA +L YR P RL LR LK GT+N+HNYT ++A D +C R I S +PF G+EW +TV GQSF++HQIRKMVA D RG + D ++F K+ AP GL+L+ ++ YN+++ R L W
Sbjct: 256 AAQVISVKLTYLNDGERETVEKINKYLPDDIRAVDIRRAPKSFDSRTRCSGRRYEYIMPTYVLAPKAYVTDLFETALEWEMAHAGGGDSSAVDDLGETADISAVAGGSIQVDAAQLAAGSPPPEAAQAENASSGAVLPSAGAVG---TEASGLTDAADAAAAASMETPAAGRRQGHAVGAADDDGASEYSGRSDTEG----DDDDGNSQQEYEGSGDEGKEARLRQAAVELSSPAVVQRVAEQLKGYRLKPDRLEDLRETLKGFLGTKNYHNYTNHKKATDASCKRLITSFTASDPF-------------------------------------------------------EHEGMEWIRLTVGGQSFIMHQIRKMVASTVDRVRGQSNPEDFTKSFLPEKINLGIAPSDGLYLERPLYEPYNKDVKRAKAHDRLLEW 632
BLAST of mRNA_P-wetherbeei_contig5801.2.1 vs. uniprot
Match: A0A6U2S3D4_9STRA (tRNA pseudouridine synthase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2S3D4_9STRA) HSP 1 Score: 100 bits (249), Expect = 1.550e-20 Identity = 67/196 (34.18%), Postives = 86/196 (43.88%), Query Frame = 2
Query: 1019 ELAAYRAPPARLAALRAALKQLEGTRNFHNYTAKRRAGDPACHRYIISTEVGEPFVVAGGDGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSSGSSHGDGGXXXXXXXXXXGLEWAAITVTGQSFLLHQIRKMVAVATDVARGGCSAADVARTFGNVKVXXAPAPGAGLFLDMLFFDEYNRNLATETGRRPLRW 1606
+L+ YR P RL LRAALK+ EGT ++HNYT + + D + RY++S +P V G EW V GQSFLLHQIRKMV +AT+VARG TF N+K+ A AP GLFLDM +FD YN + + P+ W
Sbjct: 2 QLSKYRVPSDRLEKLRAALKRYEGTHSYHNYTNGKTSDDKSAKRYMMSFIALDPVV------------------------------------------------------DEFGTEWIPTQVVGQSFLLHQIRKMVCMATEVARGATDMDAFESTFTNIKIPTATAPAQGLFLDMSYFDAYNNDKRHQI-ENPILW 142
BLAST of mRNA_P-wetherbeei_contig5801.2.1 vs. uniprot
Match: A0A7S1TVP3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVP3_9STRA) HSP 1 Score: 101 bits (251), Expect = 1.350e-18 Identity = 71/207 (34.30%), Postives = 93/207 (44.93%), Query Frame = 2
Query: 989 PPAVRTAAFAELAAYRAPPARLAALRAALKQLEGTRNFHNYTAKRRAGDPA-CHRYIISTEVGEPFVVAGGDGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSSGSSHGDGGXXXXXXXXXXGLEWAAITVTGQSFLLHQIRKMVAVATDVARGGCSAADVARTFGNVKVXXAPAPGAGLFLDMLFFDEYNRNLATETGRRPLRW 1606
PP V+ AELA YR ++ L+ +K EGT +HNYT + A C RYI +V +P+V + G+EW IT+ GQSFLL+QIRKMVA+ +V RG C+ + R+F VK+ AP GLFL+ FFDEYNR LA + R PL W
Sbjct: 383 PPEVKAEVAAELAKYRVTEEQMDKLKDVVKAFEGTHRYHNYTQIKAVKTFASCLRYIKHMDVSDPYVPS---------------------------------------------------EDPSGMEWVRITLIGQSFLLNQIRKMVAMMAEVTRGQCTMEKMERSFAEVKMDLDIAPPTGLFLEKPFFDEYNRRLADD--RMPLGW 536
BLAST of mRNA_P-wetherbeei_contig5801.2.1 vs. uniprot
Match: A0A7S2MCN9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MCN9_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 3.080e-18 Identity = 75/209 (35.89%), Postives = 88/209 (42.11%), Query Frame = 2
Query: 1007 AAFAELAAYRAPPARLAALRAALKQLEGTRNFHNYTAKRRAGDPACHRYIISTEVGEPFVVAGGDGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSSGSSHGDGGXXXXXXXXXXGLEWAAITVTGQSFLLHQIRKMVAVATDVARGGCSAADVAR--TFGNVKVXXAPAPGAGLFLDMLFFDEYNRNLATETGRRPLRWGAESEPG 1627
AA E AAYR P L R AL EGT +FHNYT+ ++ DP R I S G+PFV G EW +T+ GQSFLLHQIRKMVA A D+A S A A TFG+ KV AP GLFL FF+ YN + TG RPLR + + G
Sbjct: 287 AAAPEAAAYRVTPNLLDGFRLALSLFEGTHHFHNYTSSKKFSDPQSQRNIHSVSCGDPFV------------------------------------------------------REDGREWVVVTIMGQSFLLHQIRKMVATAIDLAHKQRSEATAAMETTFGDNKVLLPLAPSLGLFLHRPFFEPYNAHF---TGDRPLRRNLDDQQG 438
BLAST of mRNA_P-wetherbeei_contig5801.2.1 vs. uniprot
Match: A0A1V6NSK4_PENDC (PseudoU_synth_1 domain-containing protein n=1 Tax=Penicillium decumbens TaxID=69771 RepID=A0A1V6NSK4_PENDC) HSP 1 Score: 99.4 bits (246), Expect = 5.840e-18 Identity = 68/202 (33.66%), Postives = 93/202 (46.04%), Query Frame = 2
Query: 995 AVRTAAFAELAAYRAPPARLAALRAALKQLEGTRNFHNYTAKRRAGDPACHRYIISTEVGEPFVVAGGDGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSSGSSHGDGGXXXXXXXXXXGLEWAAITVTGQSFLLHQIRKMVAVATDVARGGCSAADVARTFGNVKVXXAPAPGAGLFLDMLFFDEYNRNLATETGRRPL 1600
A++TA AYR PP+R+A L+ AL + GT+NFHNYT ++ DP+ RYI S V +V G EW ++ V GQSF++HQIRKMVA+AT V R GC+A + T+G ++ APG GL L+ FD YN+ A GR+P+
Sbjct: 416 AIKTAYTTARRAYRVPPSRVARLQEALDRYVGTKNFHNYTIQKTHTDPSAKRYIKSFNVDPTPIVINGT------------------------------------------------------EWLSLKVHGQSFMMHQIRKMVAMATLVVRSGCTADRIDDTYGPHRIAIPKAPGLGLLLERPIFDTYNQK-AEGLGRQPV 562
BLAST of mRNA_P-wetherbeei_contig5801.2.1 vs. uniprot
Match: A0A8J5QLP7_9ASCO (PUS1 n=1 Tax=[Candida] subhashii TaxID=561895 RepID=A0A8J5QLP7_9ASCO) HSP 1 Score: 97.1 bits (240), Expect = 2.260e-17 Identity = 65/198 (32.83%), Postives = 89/198 (44.95%), Query Frame = 2
Query: 1028 AYRAPPARLAALRAALKQLEGTRNFHNYTAKRRAGDPACHRYIISTEVGEPFVVAGGDGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSSGSSHGDGGXXXXXXXXXXGLEWAAITVTGQSFLLHQIRKMVAVATDVARGGCSAADVARTFGNVKVXXAPAPGAGLFLDMLFFDEYNRNLATETGRRPLRWGAESE 1621
AYR P RL+ R+A++Q +GT NFHN+T + D + RYIIST+V +PFV+ G D EW +I + GQSF+LHQIRKMV++A+ V R GC + F K+ AP GL L+ FD YN+ L T+ P+ +G E
Sbjct: 328 AYRIPNNRLSQFRSAMEQYQGTHNFHNFTIGKSFKDQSAQRYIISTKVSDPFVIEGTD-----------------------------------------------------TEWISIRIHGQSFMLHQIRKMVSMASMVVRIGCPVEIIQDFFNKEKINIPKAPALGLLLENPVFDAYNQML-TKLEYDPIEFGKYDE 471
BLAST of mRNA_P-wetherbeei_contig5801.2.1 vs. uniprot
Match: C4JEG8_UNCRE (PseudoU_synth_1 domain-containing protein n=1 Tax=Uncinocarpus reesii (strain UAMH 1704) TaxID=336963 RepID=C4JEG8_UNCRE) HSP 1 Score: 97.1 bits (240), Expect = 2.460e-17 Identity = 63/201 (31.34%), Postives = 89/201 (44.28%), Query Frame = 2
Query: 998 VRTAAFAELAAYRAPPARLAALRAALKQLEGTRNFHNYTAKRRAGDPACHRYIISTEVGEPFVVAGGDGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSSGSSHGDGGXXXXXXXXXXGLEWAAITVTGQSFLLHQIRKMVAVATDVARGGCSAADVARTFGNVKVXXAPAPGAGLFLDMLFFDEYNRNLATETGRRPL 1600
VR A F AYR PPARLA ++ L GTRNFHNYT ++ DP+ R I S ++ + ++ GG EW ++ V GQSF++HQIRKMVA+A + R G +A+++G K+ APG GL L+ FD YN+ + G+ P+
Sbjct: 338 VRAAYFKAKRAYRIPPARLARVQEVLDLYVGTRNFHNYTIQKTFRDPSAKRVIKSFKISKDPIIIGGT------------------------------------------------------EWLSLKVHGQSFMMHQIRKMVAMAALIVRCGSDPQLIAQSYGPPKIPIPKAPGLGLLLERPIFDTYNKKATKDLGKNPI 484
BLAST of mRNA_P-wetherbeei_contig5801.2.1 vs. uniprot
Match: A0A7S3GQ99_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQ99_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 2.560e-17 Identity = 63/185 (34.05%), Postives = 84/185 (45.41%), Query Frame = 2
Query: 1013 FAELAAYRAPPARLAALRAALKQLEGTRNFHNYTAKRRAGDPACHRYIISTEVGEPFVVAGGDGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSSGSSHGDGGXXXXXXXXXXGLEWAAITVTGQSFLLHQIRKMVAVATDVARGGCSAADVARTFGNVKVXXAPAPGAGLFLDMLFFDEYNR 1567
+ ++ ++R+ ++A LRAALK EGTR +HN+T + D R+IIS E GEPFV G G EW +TV GQSFLL+QIRKMVA+A +V RG + + F N K+ AP GL+L LFFD YN+
Sbjct: 226 YGQVKSHRSTSEQIATLRAALKSYEGTRAYHNFTTGKHPEDANAKRFIISFEAGEPFVDEG-----------------------------------------------------TGAEWVLLTVLGQSFLLNQIRKMVAMAVEVTRGAAQLSTIMDAFTNRKMDLPMAPALGLYLGELFFDGYNK 357 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5801.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5801.2.1 >prot_P-wetherbeei_contig5801.2.1 ID=prot_P-wetherbeei_contig5801.2.1|Name=mRNA_P-wetherbeei_contig5801.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=533bp MTAAINARLPPAVRVMDVRRVTGSFDARNACTRRRYRYLLPTALLMPRAEback to top mRNA from alignment at P-wetherbeei_contig5801:1447..3697- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5801.2.1 ID=mRNA_P-wetherbeei_contig5801.2.1|Name=mRNA_P-wetherbeei_contig5801.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2251bp|location=Sequence derived from alignment at P-wetherbeei_contig5801:1447..3697- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5801:1447..3697- >mRNA_P-wetherbeei_contig5801.2.1 ID=mRNA_P-wetherbeei_contig5801.2.1|Name=mRNA_P-wetherbeei_contig5801.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1599bp|location=Sequence derived from alignment at P-wetherbeei_contig5801:1447..3697- (Phaeothamnion wetherbeei SAG_119_79)back to top |