mRNA_P-wetherbeei_contig57928.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57928.1.1
Unique NamemRNA_P-wetherbeei_contig57928.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57928.1.1 vs. uniprot
Match: A0A7C4I8L3_9PROT (Response regulator n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C4I8L3_9PROT)

HSP 1 Score: 131 bits (329), Expect = 1.930e-33
Identity = 70/165 (42.42%), Postives = 98/165 (59.39%), Query Frame = 1
Query:    1 ATQMERAVTQFQEYQPDVLVLAFNTLAKADQYYLGLYRRSGDASICDHRSIVLCGKDDVATAYKRCIEGHFDDYALFWPMAQDAFRLPMAIRHALSERDRSRTTLSASGELISAARRLPQLEQSLIEQCVDGRQHAEYALARVLYEEQRLAATLNGVTDQVTVSE 495
            +T  +R+V  F+  +P+VLVLAFN L KA++YYLGLYRR        HR+++LC KDDV   Y+ C + +FDDY LFWPM  DA RLPMA+ HAL +   SR   + + EL + ARR+ +LE  L +    G+   E A   +    Q + A L+    ++T  E
Sbjct:   48 STDPDRSVEDFERRKPEVLVLAFNALEKAERYYLGLYRRGTAVHALPHRTVILCNKDDVRRVYELCKKEYFDDYILFWPMTHDAPRLPMAVHHALRQMAASRAAPANTAELAAQARRIAELEAQLEQYAARGQARVEEASRSLRAAGQHIGAALDHFGRRLTEGE 212          
BLAST of mRNA_P-wetherbeei_contig57928.1.1 vs. uniprot
Match: UPI00036A3834 (response regulator n=1 Tax=Aromatoleum toluclasticum TaxID=92003 RepID=UPI00036A3834)

HSP 1 Score: 124 bits (312), Expect = 4.530e-31
Identity = 72/169 (42.60%), Postives = 95/169 (56.21%), Query Frame = 1
Query:    1 ATQMERAVTQFQEYQPDVLVLAFNTLAKADQYYLGLYRRSGDASICDHRSIVLCGKDDVATAYKRCIEGHFDDYALFWPMAQDAFRLPMAIRHALSERDRSRTTLSASG----ELISAARRLPQLEQSLIEQCVDGRQHAEYALARVLYEEQRLAATLNGVTDQVTVSE 495
            +T+ +R+V  F+  +P VL+LAF+TL KA++YYLGLYR S       HR+++LC KDDV   Y  C + HFDDY LFWPM  D  RLPMA+ HAL    R  T   A G    EL   ARR+ +LE  L      G  H E A   +    Q + A L G + +++  E
Sbjct:   34 STEPDRSVQDFERCKPQVLILAFDTLEKAERYYLGLYRLSTLIHALPHRTLILCNKDDVRRVYALCKKEHFDDYILFWPMTHDTPRLPMAVIHAL----RQMTDAGADGPTVRELAVQARRIAELESQLARYATTGGLHVELANRSLQQAGQEIGAALEGFSRKLSGGE 198          
BLAST of mRNA_P-wetherbeei_contig57928.1.1 vs. uniprot
Match: A0A521HMF4_9PROT (Response regulator n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521HMF4_9PROT)

HSP 1 Score: 123 bits (308), Expect = 1.620e-30
Identity = 62/135 (45.93%), Postives = 83/135 (61.48%), Query Frame = 1
Query:   13 ERAVTQFQEYQPDVLVLAFNTLAKADQYYLGLYRRSGDASICDHRSIVLCGKDDVATAYKRCIEGHFDDYALFWPMAQDAFRLPMAIRHALSERDRSRTTLSASGELISAARRLPQLEQSLIEQCVDGRQHAEYA 417
            ER V  F+  +P VL+LAFN+L KA++YYLGLYR S       HR+++LC +DD+   Y  C + HFDDY LFWPM  D  RLPMA+ HAL +     +   A+ EL + ARR+ +LE  + E    G QH + A
Sbjct:   38 ERHVADFERCKPAVLILAFNSLEKAERYYLGLYRLSSVVHALPHRTLILCNQDDLRNVYDLCKKEHFDDYVLFWPMIHDTPRLPMAVIHALRQMSDGASGAPAARELAAQARRIAELELVINEYATRGEQHIKVA 172          
BLAST of mRNA_P-wetherbeei_contig57928.1.1 vs. uniprot
Match: A0A7C9K8T5_9PROT (Response regulator n=1 Tax=Sulfuriferula multivorans TaxID=1559896 RepID=A0A7C9K8T5_9PROT)

HSP 1 Score: 123 bits (308), Expect = 1.990e-30
Identity = 70/165 (42.42%), Postives = 97/165 (58.79%), Query Frame = 1
Query:    1 ATQMERAVTQFQEYQPDVLVLAFNTLAKADQYYLGLYRRSGDASICDHRSIVLCGKDDVATAYKRCIEGHFDDYALFWPMAQDAFRLPMAIRHALSERDRSRTTLSASG----ELISAARRLPQLEQSLIEQCVDGRQHAEYALARVLYEEQRLAATLNGVTDQV 483
            +T    AV  F+ + PDVLVLAFNTLAKA++YYLGLYR SG   +  HR++VLC  D+V+ AY+ C + +FDDY  FWPM  DA RL M++ H+L    R    +S  G    E  + ARRL +L   L +    G Q  + A   +   EQ + A L+G + ++
Sbjct:   44 STNQVLAVKDFESHVPDVLVLAFNTLAKAERYYLGLYRLSGKIHLHPHRTVVLCNMDEVSQAYQACRKQYFDDYVQFWPMTNDAPRLLMSVHHSL----RGLMAISEGGPSAAEFAAQARRLAELGSMLDQHVAQGSQKIDMANRAMAQAEQDIGAALDGFSSKL 204          
BLAST of mRNA_P-wetherbeei_contig57928.1.1 vs. uniprot
Match: A0A838LTI5_9RHOO (Response regulator n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A838LTI5_9RHOO)

HSP 1 Score: 121 bits (304), Expect = 7.120e-30
Identity = 66/156 (42.31%), Postives = 91/156 (58.33%), Query Frame = 1
Query:    1 ATQMERAVTQFQEYQPDVLVLAFNTLAKADQYYLGLYRRSGDASICDHRSIVLCGKDDVATAYKRCIEGHFDDYALFWPMAQDAFRLPMAIRHALSERDRSRTTLSASGELISAARRLPQLEQSLIEQCVDGRQHAEYALARVLYEEQRLAATLNG 468
            +T  + A   F+ Y+PDVLVLAF+ L KA++YYLGLYR         HR+++LC K++V   Y+ C + +FDDY LFWPM  D  RL MAI HAL E    +    +  E  + ARRL +LE  L ++  +G QH   A   +   EQ + A L+G
Sbjct:   38 STDADAAAKDFERYRPDVLVLAFDNLEKAERYYLGLYRLCPTVQQHIHRTVILCNKEEVKRVYELCKKNYFDDYVLFWPMTYDMSRLAMAIHHALRELATLKDDGPSVAEFAAQARRLVELEGLLEQRLAEGSQHLAGAGRAMAQAEQDIGAALDG 193          
BLAST of mRNA_P-wetherbeei_contig57928.1.1 vs. uniprot
Match: A0A1M7KTP0_9BURK (Response regulator receiver domain-containing protein n=1 Tax=Duganella sacchari TaxID=551987 RepID=A0A1M7KTP0_9BURK)

HSP 1 Score: 119 bits (299), Expect = 4.110e-29
Identity = 67/167 (40.12%), Postives = 96/167 (57.49%), Query Frame = 1
Query:    1 ATQMERAVTQFQEYQPDVLVLAFNTLAKADQYYLGLYRRSGDASICDHRSIVLCGKDDVATAYKRCIEGHFDDYALFWPMAQDAFRLPMAIRHALSERDRSRTTLSASGELISAARRLPQLEQSLIEQCVDGRQHAEYALARVLYEEQRLAATLNGVTDQVTVSERT 501
            +T  E++   F+++ PDVLVLAF +LA+A+++YLGLYR     S+  HR+I+LCGKD+V    K C++ HFDDY LFWPM  DA RL MAI  A  E  +         E  S ARRL +LE  L +    G          V + E+ + A ++G + Q++ +  T
Sbjct:   35 STVEEKSAADFEQHLPDVLVLAFKSLAQAERFYLGLYRHCARLSLQPHRTIILCGKDEVHRVAKLCLQQHFDDYVLFWPMNHDAPRLTMAIHLAYRELSKFNNDGPTLAEFASQARRLSELEGLLQQYMAAGLNQVSVTQQAVEHAEREINAVVDGWSRQLSQAANT 201          
BLAST of mRNA_P-wetherbeei_contig57928.1.1 vs. uniprot
Match: UPI00198F3BBE (Response regulator n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI00198F3BBE)

HSP 1 Score: 119 bits (298), Expect = 4.960e-29
Identity = 63/161 (39.13%), Postives = 99/161 (61.49%), Query Frame = 1
Query:    1 ATQMERAVTQFQEYQPDVLVLAFNTLAKADQYYLGLYRRSGDASICDHRSIVLCGKDDVATAYKRCIEGHFDDYALFWPMAQDAFRLPMAIRHALSERDRSRTTLSASGELISAARRLPQLEQSLIEQCVDGRQHAEYALARVLYEEQRLAATLNGVTDQV 483
            +T  ERAV  F+E++PDVLVLAF+ L KA +YYLGLYR      +  HR+++LC KD+V   +  C + +FDDY L+WP+A D  RL M+I  A  +    R+ L    EL++ AR L  L+++L  + VDG + +  A + +L  E+ +   L+  ++++
Sbjct:   37 STLAERAVQDFEEFKPDVLVLAFDQLDKAQRYYLGLYRLGASLQLNLHRTVILCSKDEVQGVFDLCKKAYFDDYVLYWPLAYDGTRLAMSIWLAGRQVAAMRSNLPRPAELLAHARHLGDLDKALAREYVDGARRSNVAQSSMLEVERDMTGALDEFSERL 197          
BLAST of mRNA_P-wetherbeei_contig57928.1.1 vs. uniprot
Match: UPI0019C78BFF (Response regulator n=1 Tax=Rhodoferax sp. TaxID=50421 RepID=UPI0019C78BFF)

HSP 1 Score: 117 bits (293), Expect = 8.670e-29
Identity = 64/154 (41.56%), Postives = 90/154 (58.44%), Query Frame = 1
Query:   13 ERAVTQFQEYQPDVLVLAFNTLAKADQYYLGLYRRSGDASICDHRSIVLCGKDDVATAYKRCIEGHFDDYALFWPMAQDAFRLPMAIRHALSERDRSRTTLSASGELISAARRLPQLEQSLIEQCVDGRQHAEYALARVLYEEQRLAATLNGVT 474
            ++AV+ F+++ P VL+LAF+TL KA++Y L LYR+S       HR+I LC KD+   AY  C  G FDDY LFWPM  D+ RLPM+I  AL E    R    ++ E  + ARR+ ++E  L +    G Q  E A   V   E R+ A  +G++
Sbjct:   42 DKAVSDFEQHLPKVLLLAFDTLEKAERYSLNLYRQSDKIHAHPHRTITLCHKDEAKQAYTLCRSGSFDDYILFWPMTDDSARLPMSIHIALRELAVQRNGNPSAAEFAAQARRMAEMETLLQDSLASGDQRLETAGRAVAQAESRIGAVFDGLS 195          
BLAST of mRNA_P-wetherbeei_contig57928.1.1 vs. uniprot
Match: A0A1I4HQ78_9PROT (Response regulator receiver domain-containing protein n=3 Tax=Nitrosomonas aestuarii TaxID=52441 RepID=A0A1I4HQ78_9PROT)

HSP 1 Score: 117 bits (294), Expect = 1.970e-28
Identity = 64/160 (40.00%), Postives = 89/160 (55.62%), Query Frame = 1
Query:    4 TQMERAVTQFQEYQPDVLVLAFNTLAKADQYYLGLYRRSGDASICDHRSIVLCGKDDVATAYKRCIEGHFDDYALFWPMAQDAFRLPMAIRHALSERDRSRTTLSASGELISAARRLPQLEQSLIEQCVDGRQHAEYALARVLYEEQRLAATLNGVTDQV 483
            T  ++A   F +++P+VLVL F  L K+ +YYLGLYR      +  HR+IVLCGKD+V  AYK C EG FDDY LFWPM  D+ RLPM++  AL E    R +   + +  +  RRL  LE+ L +Q   G    E     V +     A+ L   + ++
Sbjct:   39 TDSDQASADFDQHRPEVLVLVFKELEKSQRYYLGLYREDCAVQLQPHRTIVLCGKDEVRQAYKLCREGIFDDYTLFWPMTIDSSRLPMSVCLALRELASLRVSSPTAADFAAQVRRLATLEKMLTDQLAQGDNRIEAIGQAVTHATNHAASALENFSQRL 198          
BLAST of mRNA_P-wetherbeei_contig57928.1.1 vs. uniprot
Match: A0A1J5BCH5_9PROT (Response regulatory domain-containing protein n=3 Tax=Betaproteobacteria TaxID=28216 RepID=A0A1J5BCH5_9PROT)

HSP 1 Score: 117 bits (292), Expect = 3.720e-28
Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    1 ATQMERAVTQFQEYQPDVLVLAFNTLAKADQYYLGLYRRSGDASICDHRSIVLCGKDDVATAYKRCIEGHFDDYALFWPMAQDAFRLPMAIRHALSERDRSRTTLSASGELISAARRLPQLEQSLIEQCVDGRQHAE 411
            +T  ++    F   +PDVLVLAF+++ K++++ LGLYR S    +  HR+IVLCGK++V  A++ C EG FDDY LFWPM  DA RLPM++  AL E         ++ E  + ARRL  LE+ L +Q   G +H E
Sbjct:   38 STDPDQTAADFDRNRPDVLVLAFDSIEKSERHNLGLYRHSATIHVQPHRTIVLCGKEEVQRAFRLCREGIFDDYVLFWPMTHDAPRLPMSVHLALRELAGLAARAPSAEEFAAQARRLATLEELLSQQMARGEEHIE 174          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57928.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4I8L3_9PROT1.930e-3342.42Response regulator n=3 Tax=Betaproteobacteria bact... [more]
UPI00036A38344.530e-3142.60response regulator n=1 Tax=Aromatoleum toluclastic... [more]
A0A521HMF4_9PROT1.620e-3045.93Response regulator n=1 Tax=Betaproteobacteria bact... [more]
A0A7C9K8T5_9PROT1.990e-3042.42Response regulator n=1 Tax=Sulfuriferula multivora... [more]
A0A838LTI5_9RHOO7.120e-3042.31Response regulator n=1 Tax=Rhodocyclaceae bacteriu... [more]
A0A1M7KTP0_9BURK4.110e-2940.12Response regulator receiver domain-containing prot... [more]
UPI00198F3BBE4.960e-2939.13Response regulator n=1 Tax=Proteobacteria bacteriu... [more]
UPI0019C78BFF8.670e-2941.56Response regulator n=1 Tax=Rhodoferax sp. TaxID=50... [more]
A0A1I4HQ78_9PROT1.970e-2840.00Response regulator receiver domain-containing prot... [more]
A0A1J5BCH5_9PROT3.720e-2843.80Response regulatory domain-containing protein n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57928contigP-wetherbeei_contig57928:6..506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog85643.Tmz1t_1352
PFAMsResponse_reg
Model size501
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.02e-24
EggNOG OGsCOG2199@1|root,COG3706@2|Bacteria,1NEHB@1224|Proteobacteria,2W2SA@28216|Betaproteobacteria
DescriptioncheY-homologous receiver domain
Cds size492
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.6831977-CDS-P-wetherbeei_contig57928:5..4971683186858.6831977-CDS-P-wetherbeei_contig57928:5..497Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57928 6..497 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.692513-UTR-P-wetherbeei_contig57928:497..5061683186858.692513-UTR-P-wetherbeei_contig57928:497..506Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57928 498..506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57928.1.1prot_P-wetherbeei_contig57928.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57928 6..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57928.1.1

>prot_P-wetherbeei_contig57928.1.1 ID=prot_P-wetherbeei_contig57928.1.1|Name=mRNA_P-wetherbeei_contig57928.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
MERAVTQFQEYQPDVLVLAFNTLAKADQYYLGLYRRSGDASICDHRSIVL
CGKDDVATAYKRCIEGHFDDYALFWPMAQDAFRLPMAIRHALSERDRSRT
TLSASGELISAARRLPQLEQSLIEQCVDGRQHAEYALARVLYEEQRLAAT
LNGVTDQVTVSERT
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mRNA from alignment at P-wetherbeei_contig57928:6..506-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57928.1.1 ID=mRNA_P-wetherbeei_contig57928.1.1|Name=mRNA_P-wetherbeei_contig57928.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig57928:6..506- (Phaeothamnion wetherbeei SAG_119_79)
GCCACTCAGATGGAGCGAGCCGTCACGCAATTTCAAGAGTACCAGCCGGA TGTACTCGTACTGGCTTTCAACACGCTCGCTAAGGCAGATCAGTATTACC TCGGCCTATACCGCCGCAGTGGTGACGCGTCCATATGCGATCATCGCTCC ATTGTCCTGTGTGGGAAGGACGATGTTGCGACAGCATACAAGCGCTGCAT AGAGGGTCATTTTGATGATTATGCTCTCTTTTGGCCAATGGCACAGGATG CCTTCAGGCTACCAATGGCGATTCGTCATGCACTAAGCGAACGTGACAGG TCACGTACAACGCTTTCTGCCAGCGGAGAATTGATTTCCGCAGCACGGCG ACTACCTCAACTCGAACAGTCTCTAATTGAACAGTGTGTCGACGGTAGAC AGCATGCCGAATACGCACTCGCGCGCGTCCTATACGAGGAGCAGCGTTTG GCAGCAACGCTGAACGGCGTCACCGACCAGGTCACTGTTAGCGAGCGAAC T
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57928:6..506-

>mRNA_P-wetherbeei_contig57928.1.1 ID=mRNA_P-wetherbeei_contig57928.1.1|Name=mRNA_P-wetherbeei_contig57928.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig57928:6..506- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCGAGCCGTCACGCAATTTCAAGAGTACCAGCCGGATGTACTCGT
ACTGGCTTTCAACACGCTCGCTAAGGCAGATCAGTATTACCTCGGCCTAT
ACCGCCGCAGTGGTGACGCGTCCATATGCGATCATCGCTCCATTGTCCTG
TGTGGGAAGGACGATGTTGCGACAGCATACAAGCGCTGCATAGAGGGTCA
TTTTGATGATTATGCTCTCTTTTGGCCAATGGCACAGGATGCCTTCAGGC
TACCAATGGCGATTCGTCATGCACTAAGCGAACGTGACAGGTCACGTACA
ACGCTTTCTGCCAGCGGAGAATTGATTTCCGCAGCACGGCGACTACCTCA
ACTCGAACAGTCTCTAATTGAACAGTGTGTCGACGGTAGACAGCATGCCG
AATACGCACTCGCGCGCGTCCTATACGAGGAGCAGCGTTTGGCAGCAACG
CTGAACGGCGTCACCGACCAGGTCACTGTTAGCGAGCGAACT
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