mRNA_P-wetherbeei_contig10200.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10200.1.1
Unique NamemRNA_P-wetherbeei_contig10200.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig10200.1.1 vs. uniprot
Match: D7G3M9_ECTSI (NUC153 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M9_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 5.340e-23
Identity = 45/61 (73.77%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 GKTVPHWLSEQQKRTLAKDVEYQRRIELLQDFDFPAASQRVRVSPDGQFVVVTGTYPPQVK 183
            GKT+P WLSE+++R+L+KDVEY+RRIELLQDFDFP ASQ+V VSPD Q+V+V GTYPPQ+K
Sbjct:   20 GKTLPQWLSEKKRRSLSKDVEYRRRIELLQDFDFPTASQKVCVSPDAQYVIVAGTYPPQIK 80
[Close]
BLAST of mRNA_P-wetherbeei_contig10200.1.1 vs. uniprot
Match: A0A835Z278_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z278_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.540e-22
Identity = 44/61 (72.13%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 GKTVPHWLSEQQKRTLAKDVEYQRRIELLQDFDFPAASQRVRVSPDGQFVVVTGTYPPQVK 183
            GKT+P WL+++QKR L+KD  Y+RRIELLQDF+FP ASQ +++SPDGQFV+VTGTYPPQVK
Sbjct:   37 GKTLPQWLNDKQKRALSKDDGYRRRIELLQDFEFPTASQTIKMSPDGQFVIVTGTYPPQVK 97
[Close]
BLAST of mRNA_P-wetherbeei_contig10200.1.1 vs. uniprot
Match: A0A2R5GXA8_9STRA (Nucleolar protein 10 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GXA8_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 5.060e-20
Identity = 40/61 (65.57%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 GKTVPHWLSEQQKRTLAKDVEYQRRIELLQDFDFPAASQRVRVSPDGQFVVVTGTYPPQVK 183
            GKT+P W+S++ +++LAKD EY+RRIEL+QDF FPA S RV+VSPDG+++V TG+YPPQVK
Sbjct:   17 GKTLPQWISDKNRKSLAKDEEYRRRIELVQDFYFPATSGRVKVSPDGEYIVATGSYPPQVK 77
[Close]
BLAST of mRNA_P-wetherbeei_contig10200.1.1 vs. uniprot
Match: A0A2D4BFA0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFA0_PYTIN)

HSP 1 Score: 88.2 bits (217), Expect = 6.180e-19
Identity = 37/61 (60.66%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 GKTVPHWLSEQQKRTLAKDVEYQRRIELLQDFDFPAASQRVRVSPDGQFVVVTGTYPPQVK 183
            GKT+P WL+E+ K+ L+KD +Y+RR+ELLQDF FP+ SQRV++SPDG +++ TG YPP VK
Sbjct: 2414 GKTLPQWLAEKTKKALSKDEDYRRRVELLQDFHFPSGSQRVKMSPDGNYIIATGMYPPSVK 2474
[Close]
BLAST of mRNA_P-wetherbeei_contig10200.1.1 vs. uniprot
Match: A0A024G7Q4_9STRA (NUC153 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G7Q4_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 8.350e-19
Identity = 40/61 (65.57%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 GKTVPHWLSEQQKRTLAKDVEYQRRIELLQDFDFPAASQRVRVSPDGQFVVVTGTYPPQVK 183
            GKT P WLSE+ KR+LAKD EY+ R+ELLQDF FP+ +QR+++SPD  FVV TG YPP VK
Sbjct:   20 GKTFPQWLSEKTKRSLAKDEEYRNRVELLQDFHFPSGTQRIKMSPDQNFVVATGMYPPSVK 80
[Close]
BLAST of mRNA_P-wetherbeei_contig10200.1.1 vs. uniprot
Match: W7TBN4_9STRA (Nucleolar protein 10 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBN4_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.560e-18
Identity = 38/61 (62.30%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 GKTVPHWLSEQQKRTLAKDVEYQRRIELLQDFDFPAASQRVRVSPDGQFVVVTGTYPPQVK 183
            GK VP WLSE+ +R L+K+ +Y+RR+EL+QD +FP ASQR+RVSPDGQF+V +G YPP V+
Sbjct:   20 GKAVPQWLSEKHRRQLSKEEDYRRRVELIQDLEFPTASQRLRVSPDGQFLVASGMYPPAVR 80
[Close]
BLAST of mRNA_P-wetherbeei_contig10200.1.1 vs. uniprot
Match: A0A3M6VIN9_9STRA (NUC153 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIN9_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.130e-18
Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    1 GKTVPHWLSEQ--QKRTLAKDVEYQRRIELLQDFDFPAASQRVRVSPDGQFVVVTGTYPPQVK 183
            GKT+P WL+E+   ++ LAKD +Y+RR+ELLQDF FPAASQRVR+S DG FVV TG YPP VK
Sbjct:   20 GKTLPQWLNEKGGSRKALAKDEDYRRRVELLQDFHFPAASQRVRMSADGNFVVATGVYPPSVK 82
[Close]
BLAST of mRNA_P-wetherbeei_contig10200.1.1 vs. uniprot
Match: A0A4D9D2Q4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2Q4_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.900e-18
Identity = 37/61 (60.66%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 GKTVPHWLSEQQKRTLAKDVEYQRRIELLQDFDFPAASQRVRVSPDGQFVVVTGTYPPQVK 183
            GK VP WLSE+ +R L+K+ +Y+RR+EL+QD +FP ASQR+RVSPDG+F+V +G YPP V+
Sbjct:   20 GKAVPQWLSEKHRRQLSKEEDYRRRVELIQDLEFPTASQRLRVSPDGRFLVASGMYPPAVR 80
[Close]
BLAST of mRNA_P-wetherbeei_contig10200.1.1 vs. uniprot
Match: W4GCA3_9STRA (NUC153 domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GCA3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.420e-18
Identity = 35/61 (57.38%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 GKTVPHWLSEQQKRTLAKDVEYQRRIELLQDFDFPAASQRVRVSPDGQFVVVTGTYPPQVK 183
            GKT+P W++++ +R L++D +YQRR+ELLQDF FP +SQRV +SPDG +V+  GTYPP +K
Sbjct:   20 GKTLPQWIAQKTRRALSRDEDYQRRLELLQDFHFPVSSQRVTMSPDGHYVIAAGTYPPSIK 80
[Close]
BLAST of mRNA_P-wetherbeei_contig10200.1.1 vs. uniprot
Match: A0A485KJT6_9STRA (Aste57867_8214 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJT6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.010e-17
Identity = 35/61 (57.38%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 GKTVPHWLSEQQKRTLAKDVEYQRRIELLQDFDFPAASQRVRVSPDGQFVVVTGTYPPQVK 183
            GKT+P WL+++ ++ L++D +Y+RR+ELLQDF FP +SQRV +SPDG +V+ TGTYPP +K
Sbjct:   21 GKTLPQWLAQKTRKALSRDEDYRRRLELLQDFHFPVSSQRVTMSPDGHYVIATGTYPPSLK 81
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10200.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3M9_ECTSI5.340e-2373.77NUC153 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835Z278_9STRA2.540e-2272.13WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A2R5GXA8_9STRA5.060e-2065.57Nucleolar protein 10 n=1 Tax=Hondaea fermentalgian... [more]
A0A2D4BFA0_PYTIN6.180e-1960.66Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A024G7Q4_9STRA8.350e-1965.57NUC153 domain-containing protein n=1 Tax=Albugo ca... [more]
W7TBN4_9STRA1.560e-1862.30Nucleolar protein 10 n=1 Tax=Nannochloropsis gadit... [more]
A0A3M6VIN9_9STRA2.130e-1866.67NUC153 domain-containing protein n=2 Tax=Peronospo... [more]
A0A4D9D2Q4_9STRA3.900e-1860.66Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W4GCA3_9STRA5.420e-1857.38NUC153 domain-containing protein n=5 Tax=Aphanomyc... [more]
A0A485KJT6_9STRA1.010e-1757.38Aste57867_8214 protein n=1 Tax=Aphanomyces stellat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10200contigP-wetherbeei_contig10200:228..410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3M9
Preferred nameNOL10
PFAMsNUC153,WD40
Model size183
Max annot lvl2759|Eukaryota
KEGG koko:K14788
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
Exons1
Evalue8.76e-24
EggNOG OGsKOG2321@1|root,KOG2321@2759|Eukaryota
DescriptionrRNA processing
Cds size183
COG categoryS
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185858.732406-CDS-P-wetherbeei_contig10200:227..4101683185858.732406-CDS-P-wetherbeei_contig10200:227..410Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10200 228..410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10200.1.1prot_P-wetherbeei_contig10200.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10200 228..410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10200.1.1

>prot_P-wetherbeei_contig10200.1.1 ID=prot_P-wetherbeei_contig10200.1.1|Name=mRNA_P-wetherbeei_contig10200.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=61bp
GKTVPHWLSEQQKRTLAKDVEYQRRIELLQDFDFPAASQRVRVSPDGQFV
VVTGTYPPQVK
back to top

mRNA from alignment at P-wetherbeei_contig10200:228..410-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10200.1.1 ID=mRNA_P-wetherbeei_contig10200.1.1|Name=mRNA_P-wetherbeei_contig10200.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig10200:228..410- (Phaeothamnion wetherbeei SAG_119_79)
GGCAAGACGGTGCCGCATTGGCTATCGGAGCAGCAGAAGCGGACGCTCGC
AAAGGACGTTGAGTATCAGCGGCGCATCGAGCTCCTGCAGGACTTCGACT
TCCCCGCAGCGTCGCAGCGCGTGCGCGTGTCGCCGGACGGGCAGTTCGTC
GTCGTCACCGGCACATACCCGCCTCAGGTCAAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10200:228..410-

>mRNA_P-wetherbeei_contig10200.1.1 ID=mRNA_P-wetherbeei_contig10200.1.1|Name=mRNA_P-wetherbeei_contig10200.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig10200:228..410- (Phaeothamnion wetherbeei SAG_119_79)
GGCAAGACGGTGCCGCATTGGCTATCGGAGCAGCAGAAGCGGACGCTCGC
AAAGGACGTTGAGTATCAGCGGCGCATCGAGCTCCTGCAGGACTTCGACT
TCCCCGCAGCGTCGCAGCGCGTGCGCGTGTCGCCGGACGGGCAGTTCGTC
GTCGTCACCGGCACATACCCGCCTCAGGTCAAA
back to top