mRNA_P-wetherbeei_contig57793.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57793.1.1
Unique NamemRNA_P-wetherbeei_contig57793.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57793.1.1 vs. uniprot
Match: A0A346A3G8_9HYPH (ABC transporter permease n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A3G8_9HYPH)

HSP 1 Score: 170 bits (431), Expect = 1.280e-50
Identity = 85/132 (64.39%), Postives = 105/132 (79.55%), Query Frame = 1
Query:   28 RNVPLLLLALAWEFASRTGLVSRSVLPALSEVVAAWGEMAVSGELMRHGAVSLYRSFAGLLLAVGFGVLLGVAMAWWKPVRLALSGLVEVFYPLPKSALIPVTALWLGFGDASKILLIFLACLLPVTVAAYN 423
            R  PLL+LA AWE +SR GLVS   LP LS+VV+AW +M   GEL+ +G  S+YR+FAGL LAV  G +LG+AMAW+KPV + L+ +VE+FYPLPKSALIPVT +WLGFGD SKILLIFL C+LPVT+ A+N
Sbjct:    6 RYSPLLILAAAWELSSRLGLVSPLALPPLSDVVSAWIDMIKDGELVTNGVTSIYRAFAGLALAVVIGGVLGIAMAWFKPVNVLLAPIVEIFYPLPKSALIPVTVIWLGFGDGSKILLIFLGCMLPVTIGAFN 137          
BLAST of mRNA_P-wetherbeei_contig57793.1.1 vs. uniprot
Match: A0A1Q7BZM4_9PROT (ABC transmembrane type-1 domain-containing protein n=7 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A1Q7BZM4_9PROT)

HSP 1 Score: 168 bits (425), Expect = 1.300e-49
Identity = 86/136 (63.24%), Postives = 105/136 (77.21%), Query Frame = 1
Query:   16 AILWRNVPLLLLALAWEFASRTGLVSRSVLPALSEVVAAWGEMAVSGELMRHGAVSLYRSFAGLLLAVGFGVLLGVAMAWWKPVRLALSGLVEVFYPLPKSALIPVTALWLGFGDASKILLIFLACLLPVTVAAYN 423
            A L R +PLLLLALAWE  +R+GL+S   LP LS V AAW E+   GEL+ +GA SL+R+ AGL LA+  G  LG+ MAWW+PV + LS LVE+FYP+PKSALIPVT LWLGFG+ SKILLIFL C+LPVT+ A+N
Sbjct:   10 AALLRYLPLLLLALAWEAGARSGLISTLALPPLSAVGAAWIELVRDGELISNGAASLWRAGAGLFLAIVIGGALGIVMAWWRPVNVLLSPLVEMFYPMPKSALIPVTVLWLGFGNGSKILLIFLGCMLPVTIGAFN 145          
BLAST of mRNA_P-wetherbeei_contig57793.1.1 vs. uniprot
Match: A0A1W6ZPT0_9HYPH (ABC transmembrane type-1 domain-containing protein n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZPT0_9HYPH)

HSP 1 Score: 166 bits (420), Expect = 5.880e-49
Identity = 82/132 (62.12%), Postives = 101/132 (76.52%), Query Frame = 1
Query:   28 RNVPLLLLALAWEFASRTGLVSRSVLPALSEVVAAWGEMAVSGELMRHGAVSLYRSFAGLLLAVGFGVLLGVAMAWWKPVRLALSGLVEVFYPLPKSALIPVTALWLGFGDASKILLIFLACLLPVTVAAYN 423
            R +PLL+LA+AWE ASR  LVS   LP LS+V+ AW ++  SGEL+ +GA SL+R+ AGL LA+  G  LG+ MAWW+PV + LS LVE  YP+PKSALIPVT +WLGFGD SKILLI L C+LPVT+ AYN
Sbjct:    6 RYLPLLILAVAWEAASRLQLVSSLALPPLSDVIVAWWDLLKSGELLTNGAASLWRASAGLFLAIVIGATLGIFMAWWRPVNVVLSPLVEALYPMPKSALIPVTVIWLGFGDGSKILLILLGCMLPVTIGAYN 137          
BLAST of mRNA_P-wetherbeei_contig57793.1.1 vs. uniprot
Match: A0A537NA97_9PROT (ABC transporter permease n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NA97_9PROT)

HSP 1 Score: 166 bits (420), Expect = 5.880e-49
Identity = 82/132 (62.12%), Postives = 104/132 (78.79%), Query Frame = 1
Query:   28 RNVPLLLLALAWEFASRTGLVSRSVLPALSEVVAAWGEMAVSGELMRHGAVSLYRSFAGLLLAVGFGVLLGVAMAWWKPVRLALSGLVEVFYPLPKSALIPVTALWLGFGDASKILLIFLACLLPVTVAAYN 423
            R +PLL+LALAWE ++R GLVS   LP LS+V AAW E+   GEL+ +GA SL+R+ AGL+LA+  G  +G+ MAWW+PV + L  LVE+FYP+PKSALIPVT LWLGFG+ SKILLIFL C+LPVT+ A+N
Sbjct:    6 RYLPLLILALAWEVSARAGLVSTLALPPLSDVAAAWLELVKDGELVTNGAASLWRAGAGLVLAIVIGAGVGIFMAWWRPVNVLLGPLVEMFYPMPKSALIPVTVLWLGFGNGSKILLIFLGCMLPVTIGAFN 137          
BLAST of mRNA_P-wetherbeei_contig57793.1.1 vs. uniprot
Match: A0A1Q4BGE6_9HYPH (ABC transmembrane type-1 domain-containing protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1Q4BGE6_9HYPH)

HSP 1 Score: 163 bits (412), Expect = 9.250e-48
Identity = 83/132 (62.88%), Postives = 105/132 (79.55%), Query Frame = 1
Query:   28 RNVPLLLLALAWEFASRTGLVSRSVLPALSEVVAAWGEMAVSGELMRHGAVSLYRSFAGLLLAVGFGVLLGVAMAWWKPVRLALSGLVEVFYPLPKSALIPVTALWLGFGDASKILLIFLACLLPVTVAAYN 423
            R  PLL+LA+ WE  +R+GLV+RS LP LS+V+ AW ++A + +   + A SLYR+FAGL+LA+  G L+G+AMA  KP+R  L+ +VEVFYPLPKSALIPVTALWLG GDASKILLIFL C+LPVT+ AYN
Sbjct:    6 RYSPLLILAVLWEAVARSGLVARSALPPLSDVIVAWFQLAGTSDFWINAADSLYRTFAGLILAIVIGALIGIAMASSKPIRTLLNPIVEVFYPLPKSALIPVTALWLGLGDASKILLIFLGCMLPVTLGAYN 137          
BLAST of mRNA_P-wetherbeei_contig57793.1.1 vs. uniprot
Match: A0A140GVX4_9HYPH (Taurine transport system permease protein TauC n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A140GVX4_9HYPH)

HSP 1 Score: 161 bits (407), Expect = 6.060e-47
Identity = 78/132 (59.09%), Postives = 102/132 (77.27%), Query Frame = 1
Query:   28 RNVPLLLLALAWEFASRTGLVSRSVLPALSEVVAAWGEMAVSGELMRHGAVSLYRSFAGLLLAVGFGVLLGVAMAWWKPVRLALSGLVEVFYPLPKSALIPVTALWLGFGDASKILLIFLACLLPVTVAAYN 423
            R +PL+LLA+AWE  SR GLVS S LP LS+V+A+W ++  +GEL+ +   SLYR+ AGL LA+  G  LG+ MAW KPV + ++ +VE+FYPLPKSALIPVT +WLG GD SKILLIFL C++PVT+ A+N
Sbjct:    7 RYLPLVLLAIAWEAVSRLGLVSSSALPPLSDVIASWIDLIKTGELVSNAGASLYRAAAGLALAIVIGAALGIGMAWSKPVNVVVAPIVEIFYPLPKSALIPVTVIWLGLGDGSKILLIFLGCMIPVTIGAFN 138          
BLAST of mRNA_P-wetherbeei_contig57793.1.1 vs. uniprot
Match: A0A1F4DUH2_9PROT (ABC transmembrane type-1 domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4DUH2_9PROT)

HSP 1 Score: 160 bits (405), Expect = 1.250e-46
Identity = 82/135 (60.74%), Postives = 103/135 (76.30%), Query Frame = 1
Query:   19 ILWRNVPLLLLALAWEFASRTGLVSRSVLPALSEVVAAWGEMAVSGELMRHGAVSLYRSFAGLLLAVGFGVLLGVAMAWWKPVRLALSGLVEVFYPLPKSALIPVTALWLGFGDASKILLIFLACLLPVTVAAYN 423
            +L R  PLLLLA+ W+ A    +VS + LP+L +V +AW ++  SGEL+R+ A SLYR  AG LLAV  G  LG+ MAWW+P+ L LS LVE+FYPLPK+ALIPVT +WLGFGDASKILLIFL C+LPVT+ A+N
Sbjct:    4 LLARYSPLLLLAVLWQLAWYFEMVSSTALPSLVDVASAWVDLLRSGELLRNAAASLYRGGAGFLLAVVVGGALGMIMAWWRPLNLMLSPLVEIFYPLPKTALIPVTVIWLGFGDASKILLIFLGCMLPVTIGAFN 138          
BLAST of mRNA_P-wetherbeei_contig57793.1.1 vs. uniprot
Match: A0A1E4PQ18_9BURK (ABC transmembrane type-1 domain-containing protein n=1 Tax=Rubrivivax sp. SCN 70-15 TaxID=1660139 RepID=A0A1E4PQ18_9BURK)

HSP 1 Score: 160 bits (404), Expect = 1.580e-46
Identity = 86/136 (63.24%), Postives = 103/136 (75.74%), Query Frame = 1
Query:   16 AILWRNVPLLLLALAWEFASRTGLVSRSVLPALSEVVAAWGEMAVSGELMRHGAVSLYRSFAGLLLAVGFGVLLGVAMAWWKPVRLALSGLVEVFYPLPKSALIPVTALWLGFGDASKILLIFLACLLPVTVAAYN 423
            A L R  PLL+LA AWE   R GLVS SVLP+L +VV AW  +  SG+L  + AVSLYR+ AGL LAV  G +LG+AMAW++PV    S LVE+ YP+PKSALIPVTA+WLGFGD SKILLIFL C+LPVT+ A+N
Sbjct:    3 AALVRYAPLLILAAAWEAVVRFGLVSDSVLPSLVDVVRAWFGLMKSGDLWLNTAVSLYRAGAGLALAVVVGAVLGIAMAWYRPVNALASPLVEMLYPMPKSALIPVTAVWLGFGDGSKILLIFLGCMLPVTLGAFN 138          
BLAST of mRNA_P-wetherbeei_contig57793.1.1 vs. uniprot
Match: A0A537QZ16_9PROT (ABC transporter permease n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537QZ16_9PROT)

HSP 1 Score: 159 bits (402), Expect = 3.440e-46
Identity = 81/141 (57.45%), Postives = 104/141 (73.76%), Query Frame = 1
Query:    1 MTSSVAILWRNVPLLLLALAWEFASRTGLVSRSVLPALSEVVAAWGEMAVSGELMRHGAVSLYRSFAGLLLAVGFGVLLGVAMAWWKPVRLALSGLVEVFYPLPKSALIPVTALWLGFGDASKILLIFLACLLPVTVAAYN 423
            M +   IL R VPLLLLA+AWE  +RTGLV  + LP L  V AAW ++AV G+L  +G  S+ R  AGL LA+  G L+GV MAW+KPVR+A++  V+ FYP+PKSALIPV  LWLGFGDASK+  IF+ CLLP+T++A+N
Sbjct:    1 MNAVAQILPRYVPLLLLAMAWEVVTRTGLVPTAALPPLDTVAAAWLDLAVGGDLWSNGVASISRGAAGLGLAICLGSLIGVLMAWYKPVRIAVNPTVQFFYPMPKSALIPVMVLWLGFGDASKVATIFIGCLLPITLSAFN 141          
BLAST of mRNA_P-wetherbeei_contig57793.1.1 vs. uniprot
Match: A0A1Q7WM65_9PROT (ABC transmembrane type-1 domain-containing protein n=4 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A1Q7WM65_9PROT)

HSP 1 Score: 158 bits (399), Expect = 1.440e-45
Identity = 80/136 (58.82%), Postives = 103/136 (75.74%), Query Frame = 1
Query:   16 AILWRNVPLLLLALAWEFASRTGLVSRSVLPALSEVVAAWGEMAVSGELMRHGAVSLYRSFAGLLLAVGFGVLLGVAMAWWKPVRLALSGLVEVFYPLPKSALIPVTALWLGFGDASKILLIFLACLLPVTVAAYN 423
            A++ R +PLLLLAL WE  +RTGLV  S LP L  V  AW E+A SG+L  +G  S+ R  AGL LA+  G L+G+ MAW+KPVR A++ +V+ FYP+PKSALIPV  LWLGFGDASK++LIF+ CLLPVT++A+N
Sbjct:   20 AVVPRYLPLLLLALGWEALTRTGLVPTSALPPLDTVARAWYELASSGDLWTNGVASMTRGAAGLGLAIAGGSLIGILMAWYKPVRAAVNPIVQFFYPMPKSALIPVMVLWLGFGDASKVVLIFVGCLLPVTLSAFN 155          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57793.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A346A3G8_9HYPH1.280e-5064.39ABC transporter permease n=1 Tax=Pseudolabrys taiw... [more]
A0A1Q7BZM4_9PROT1.300e-4963.24ABC transmembrane type-1 domain-containing protein... [more]
A0A1W6ZPT0_9HYPH5.880e-4962.12ABC transmembrane type-1 domain-containing protein... [more]
A0A537NA97_9PROT5.880e-4962.12ABC transporter permease n=1 Tax=Alphaproteobacter... [more]
A0A1Q4BGE6_9HYPH9.250e-4862.88ABC transmembrane type-1 domain-containing protein... [more]
A0A140GVX4_9HYPH6.060e-4759.09Taurine transport system permease protein TauC n=1... [more]
A0A1F4DUH2_9PROT1.250e-4660.74ABC transmembrane type-1 domain-containing protein... [more]
A0A1E4PQ18_9BURK1.580e-4663.24ABC transmembrane type-1 domain-containing protein... [more]
A0A537QZ16_9PROT3.440e-4657.45ABC transporter permease n=1 Tax=Alphaproteobacter... [more]
A0A1Q7WM65_9PROT1.440e-4558.82ABC transmembrane type-1 domain-containing protein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57793contigP-wetherbeei_contig57793:16..441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1380394.JADL01000008_gene3563
PFAMsBPD_transp_1
Model size426
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.49e-38
EggNOG OGsCOG0600@1|root,COG0600@2|Bacteria,1QZW9@1224|Proteobacteria,2TVF6@28211|Alphaproteobacteria,2JX2G@204441|Rhodospirillales
DescriptionBinding-protein-dependent transport system inner membrane component
Cds size426
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186856.6304312-CDS-P-wetherbeei_contig57793:15..4411683186856.6304312-CDS-P-wetherbeei_contig57793:15..441Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57793 16..441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57793.1.1prot_P-wetherbeei_contig57793.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57793 16..441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57793.1.1

>prot_P-wetherbeei_contig57793.1.1 ID=prot_P-wetherbeei_contig57793.1.1|Name=mRNA_P-wetherbeei_contig57793.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
MTSSVAILWRNVPLLLLALAWEFASRTGLVSRSVLPALSEVVAAWGEMAV
SGELMRHGAVSLYRSFAGLLLAVGFGVLLGVAMAWWKPVRLALSGLVEVF
YPLPKSALIPVTALWLGFGDASKILLIFLACLLPVTVAAYN*
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mRNA from alignment at P-wetherbeei_contig57793:16..441-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57793.1.1 ID=mRNA_P-wetherbeei_contig57793.1.1|Name=mRNA_P-wetherbeei_contig57793.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig57793:16..441- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGTCCTCGGTCGCGATCCTGTGGCGCAACGTGCCCCTGCTGCTGCT GGCGCTGGCGTGGGAGTTCGCCTCGCGCACCGGGCTCGTATCCCGTTCAG TTTTGCCCGCGCTAAGTGAAGTCGTTGCTGCTTGGGGCGAGATGGCAGTG TCGGGGGAGCTGATGCGACATGGCGCCGTCTCCCTCTATCGCTCCTTCGC CGGACTTCTCCTCGCGGTTGGCTTCGGGGTTCTGCTCGGTGTGGCCATGG CGTGGTGGAAGCCCGTGCGCTTGGCGCTGTCCGGCCTTGTCGAGGTTTTC TATCCACTGCCCAAGTCGGCCCTCATTCCGGTTACGGCACTGTGGCTGGG GTTCGGCGATGCCTCCAAGATCCTGCTGATTTTCCTGGCCTGTCTACTGC CTGTGACCGTGGCGGCATACAATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57793:16..441-

>mRNA_P-wetherbeei_contig57793.1.1 ID=mRNA_P-wetherbeei_contig57793.1.1|Name=mRNA_P-wetherbeei_contig57793.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig57793:16..441- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGTCCTCGGTCGCGATCCTGTGGCGCAACGTGCCCCTGCTGCTGCT
GGCGCTGGCGTGGGAGTTCGCCTCGCGCACCGGGCTCGTATCCCGTTCAG
TTTTGCCCGCGCTAAGTGAAGTCGTTGCTGCTTGGGGCGAGATGGCAGTG
TCGGGGGAGCTGATGCGACATGGCGCCGTCTCCCTCTATCGCTCCTTCGC
CGGACTTCTCCTCGCGGTTGGCTTCGGGGTTCTGCTCGGTGTGGCCATGG
CGTGGTGGAAGCCCGTGCGCTTGGCGCTGTCCGGCCTTGTCGAGGTTTTC
TATCCACTGCCCAAGTCGGCCCTCATTCCGGTTACGGCACTGTGGCTGGG
GTTCGGCGATGCCTCCAAGATCCTGCTGATTTTCCTGGCCTGTCTACTGC
CTGTGACCGTGGCGGCATACAATTGA
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