mRNA_P-wetherbeei_contig5770.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5770.1.1
Unique NamemRNA_P-wetherbeei_contig5770.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5770.1.1 vs. uniprot
Match: A0A061SB07_9CHLO (Uncharacterized protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SB07_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 1.310e-9
Identity = 33/57 (57.89%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   10 GPTDAAGIVADLSDRPLLAASRPCGGVYGEVVFASADHALYGVDVATGRPTRRLYGK 180
            GP D  G++ DLSDRP L AS   G   GE V  S+DHALYGVDV +GR  R LY K
Sbjct:  172 GPRDPQGLLTDLSDRPNLCASVDWGA--GEAVVGSSDHALYGVDVRSGRLRRTLYTK 226          
BLAST of mRNA_P-wetherbeei_contig5770.1.1 vs. uniprot
Match: A0A5J4XZV4_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XZV4_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 2.890e-8
Identity = 32/60 (53.33%), Postives = 36/60 (60.00%), Query Frame = 1
Query:    1 WLLGPTDAAGIVADLSDRPLLAASRPCGGVYGEVVFASADHALYGVDVATGRPTRRLYGK 180
            W  GP D AG V  +SD PL+ +S       GEVV  SADHALY VDV TG+  R LY K
Sbjct:   87 WRSGPADPAGRVCHVSDVPLMCSSINWSA--GEVVVGSADHALYVVDVQTGKKRRTLYTK 144          
BLAST of mRNA_P-wetherbeei_contig5770.1.1 vs. uniprot
Match: A0A7R9YRK8_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YRK8_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 7.530e-8
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   10 GPTDAAGIVADLSDRPLLAASRPCGGVYGEVVFASADHALYGVDVATGRPTRRLYGK 180
            GP+DAAG++ D+SDRP L ++       GE+V  S+DHALY +D   G+  R LY K
Sbjct:   42 GPSDAAGVLEDVSDRPSLCSAA--NWARGEIVVGSSDHALYVIDAVKGKRKRTLYSK 96          
BLAST of mRNA_P-wetherbeei_contig5770.1.1 vs. uniprot
Match: A0A1Y1I2U3_KLENI (F-box and WD-40 domain protein 7 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I2U3_KLENI)

HSP 1 Score: 55.1 bits (131), Expect = 2.680e-7
Identity = 31/61 (50.82%), Postives = 36/61 (59.02%), Query Frame = 1
Query:    1 WLLGPTDAAGIVADLSDRPLLAASRPCGGVYG-EVVFASADHALYGVDVATGRPTRRLYGK 180
            W  GP D AG V  LS+ P+L     C  V G E V  S+DHA+Y VD+ TGR  R LYGK
Sbjct:  278 WNKGPMDEAGRVTKLSELPIL-----CMSVLGNEAVVGSSDHAVYTVDLDTGRKKRTLYGK 333          
BLAST of mRNA_P-wetherbeei_contig5770.1.1 vs. uniprot
Match: A0A7S0SFL7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SFL7_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 6.770e-7
Identity = 28/60 (46.67%), Postives = 32/60 (53.33%), Query Frame = 1
Query:    1 WLLGPTDAAGIVADLSDRPLLAASRPCGGVYGEVVFASADHALYGVDVATGRPTRRLYGK 180
            W   P D +G V  LSDRPL   S   G  +   V    DHALY V+V +GR TR LY K
Sbjct:   45 WFTSPKDPSGRVTSLSDRPLSCGSLNPGQTHA--VIGGTDHALYEVEVRSGRKTRTLYSK 102          
BLAST of mRNA_P-wetherbeei_contig5770.1.1 vs. uniprot
Match: C1EJE3_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EJE3_MICCC)

HSP 1 Score: 48.9 bits (115), Expect = 4.010e-5
Identity = 25/58 (43.10%), Postives = 34/58 (58.62%), Query Frame = 1
Query:    1 WLLGPTDAAGIVADLSDRPLLAASRPCGGVYGEVVFASADHALYGVDVATGRPTRRLY 174
            W  GP DAAG+   L+D+P+   S    G +  +V  S DHALY V +ATG+ TR  +
Sbjct:  132 WYDGPIDAAGVRVALTDQPICVGSVNPRGTH--LVVGSTDHALYEVQLATGKKTRTFH 187          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5770.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A061SB07_9CHLO1.310e-957.89Uncharacterized protein n=1 Tax=Tetraselmis sp. GS... [more]
A0A5J4XZV4_9CHLO2.890e-853.33Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
A0A7R9YRK8_9CHLO7.530e-847.37Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A1Y1I2U3_KLENI2.680e-750.82F-box and WD-40 domain protein 7 n=1 Tax=Klebsormi... [more]
A0A7S0SFL7_9CHLO6.770e-746.67Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
C1EJE3_MICCC4.010e-543.10Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5770contigP-wetherbeei_contig5770:53..232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog296587.XP_002506767.1
PFAMsWD40
Model size180
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.58e-06
EggNOG OGsKOG0274@1|root,KOG0274@2759|Eukaryota,37V1D@33090|Viridiplantae,34I44@3041|Chlorophyta
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-11_003280.1
DescriptionWD domain, G-beta repeat
Cds size180
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186855.4932973-CDS-P-wetherbeei_contig5770:52..2321683186855.4932973-CDS-P-wetherbeei_contig5770:52..232Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5770 53..232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5770.1.1prot_P-wetherbeei_contig5770.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5770 53..232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5770.1.1

>prot_P-wetherbeei_contig5770.1.1 ID=prot_P-wetherbeei_contig5770.1.1|Name=mRNA_P-wetherbeei_contig5770.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=60bp
WLLGPTDAAGIVADLSDRPLLAASRPCGGVYGEVVFASADHALYGVDVAT
GRPTRRLYGK
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mRNA from alignment at P-wetherbeei_contig5770:53..232-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5770.1.1 ID=mRNA_P-wetherbeei_contig5770.1.1|Name=mRNA_P-wetherbeei_contig5770.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig5770:53..232- (Phaeothamnion wetherbeei SAG_119_79)
TGGCTGTTGGGCCCGACAGACGCCGCCGGGATCGTCGCGGACCTCAGCGA CCGCCCACTCCTGGCCGCCAGCCGCCCCTGCGGCGGCGTTTACGGCGAGG TGGTGTTCGCGTCGGCGGACCACGCGCTCTACGGCGTCGATGTTGCCACC GGCCGCCCGACGCGTCGTCTCTACGGCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5770:53..232-

>mRNA_P-wetherbeei_contig5770.1.1 ID=mRNA_P-wetherbeei_contig5770.1.1|Name=mRNA_P-wetherbeei_contig5770.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig5770:53..232- (Phaeothamnion wetherbeei SAG_119_79)
TGGCTGTTGGGCCCGACAGACGCCGCCGGGATCGTCGCGGACCTCAGCGA
CCGCCCACTCCTGGCCGCCAGCCGCCCCTGCGGCGGCGTTTACGGCGAGG
TGGTGTTCGCGTCGGCGGACCACGCGCTCTACGGCGTCGATGTTGCCACC
GGCCGCCCGACGCGTCGTCTCTACGGCAAG
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