mRNA_P-wetherbeei_contig57479.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57479.1.1
Unique NamemRNA_P-wetherbeei_contig57479.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: A0A2W5QLY7_RHOSU (RNA polymerase sigma factor n=1 Tax=Rhodovulum sulfidophilum TaxID=35806 RepID=A0A2W5QLY7_RHOSU)

HSP 1 Score: 112 bits (281), Expect = 1.350e-28
Identity = 68/139 (48.92%), Postives = 86/139 (61.87%), Query Frame = 1
Query:   10 ADTENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAAQREQRLVAD-YARSEAGAESYE-VDLLAQAFGARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVRAAFGEG 420
            AD + + QDV ++VWR+A  FD   A+A TWIFT+ RNRRID+ R   R      D   + E   + ++ +D  AQA  ARI A L ELP EQR VL+  + +G S  EIA   GLP+GTVKSR RLAF  +R A GEG
Sbjct:   52 ADADEIAQDVMVLVWRRAETFDPGRAAASTWIFTIARNRRIDILRRTSRPAPDPEDPLFQPEPEPDGFQRID--AQAREARIRAELEELPAEQRAVLVAAFYDGLSHAEIADRLGLPLGTVKSRIRLAFRHLRGALGEG 188          
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: A0A2H6AY82_9BACT (RNA polymerase sigma factor n=1 Tax=bacterium HR40 TaxID=2035435 RepID=A0A2H6AY82_9BACT)

HSP 1 Score: 110 bits (276), Expect = 6.530e-28
Identity = 66/139 (47.48%), Postives = 87/139 (62.59%), Query Frame = 1
Query:    7 PAD-TENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAAQREQRLVADYARSEAGAESYEVDLLA---QAFGARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVRAAF 411
            PAD  E+L Q+V L VWR+A  FD R A+A TWIFT+ RNRRIDL R  + E  +  +    E   E++  D+ A   +    R+   +  LP EQ EVL + ++EGK+Q EIA E GLP+GTVKSR RLA  R+R+ F
Sbjct:   49 PADRAEDLAQEVMLTVWRRAPTFDPRKATASTWIFTIARNRRIDLLRRQEPES-MALEAGEEEEPEETFLADIEASDARLMRERLEEAIAHLPSEQAEVLRRFFLEGKAQGEIADELGLPLGTVKSRLRLALARLRSYF 186          
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: A0A2E8VTA7_9GAMM (RNA polymerase subunit sigma n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8VTA7_9GAMM)

HSP 1 Score: 109 bits (273), Expect = 6.810e-27
Identity = 59/130 (45.38%), Postives = 83/130 (63.85%), Query Frame = 1
Query:   13 DTENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAAQREQRLVADYARSEAGAESYEVDLLAQAFGARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVR 402
            +++N++QD  L VW+KA  F   L+SARTW+F +VRNR IDLQR A RE +         A  +     +   +  +R+ AML  LP E  +VL+  Y+EGKS REI+ E+GLP+GTVKSR RL F +++
Sbjct:  111 ESDNIVQDAMLSVWQKAHSFRPELSSARTWVFAIVRNRMIDLQRMAVREAKGKDRIKTLSAAPDVSNGGVEGDSVRSRLEAMLSVLPAEHAQVLVMSYLEGKSHREISTETGLPLGTVKSRIRLGFHKLQ 240          
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: UPI001678E9E8 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI001678E9E8)

HSP 1 Score: 107 bits (266), Expect = 2.080e-26
Identity = 61/128 (47.66%), Postives = 80/128 (62.50%), Query Frame = 1
Query:   19 ENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAAQREQRLVADYARSEAGAESYEVDLLAQAFGARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVR 402
            E ++Q+V L VWRKAA FD R ASA TWIFT+ RNRRID  R  +R +    D A    G    +  + A     R+ A +  LP EQ +++ + Y E +S REIA+ SGLP+GTVKSR RLA +R+R
Sbjct:   56 EEVVQEVMLTVWRKAASFDRRQASAGTWIFTIARNRRIDRLRRERRPEFDPNDPALVPEGPADADRTVWAGQIEGRVRAAIESLPPEQSDLIRRAYFEDQSHREIAETSGLPLGTVKSRIRLAMQRLR 183          
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: UPI001AE9A409 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Azospirillum rugosum TaxID=416170 RepID=UPI001AE9A409)

HSP 1 Score: 106 bits (264), Expect = 4.250e-26
Identity = 62/133 (46.62%), Postives = 81/133 (60.90%), Query Frame = 1
Query:   19 ENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAAQREQRLVADYARSEAGAESYEVDLLAQAFGARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVRAAFGE 417
            E L+QDV L VW++A  FD  LASA TWI+T+ RNRRID  R  +R +    D      GA   +  + A    +R+ A++ +LP EQ EVL   Y E K   EI+ E G+P+GTVK+R RLA  R+R AFGE
Sbjct:   57 EELVQDVMLTVWQRADTFDPDLASAATWIYTIARNRRIDRIRQERRPELHPDDSMLDGDGAPPPDHQVQAAQEASRLRAVIGDLPPEQAEVLRLAYYEDKVHSEISVEQGIPLGTVKTRLRLALVRLRRAFGE 189          
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: A0A0A0EHR9_9RHOB (RNA polymerase sigma factor RpoE n=2 Tax=Pseudooceanicola atlanticus TaxID=1461694 RepID=A0A0A0EHR9_9RHOB)

HSP 1 Score: 106 bits (265), Expect = 5.700e-26
Identity = 61/136 (44.85%), Postives = 80/136 (58.82%), Query Frame = 1
Query:    7 PADTENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAAQREQRLVADYARSEAGAESYEVDLLAQAFGARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVRAAFG 414
            PA  E+  QDV + VWRKA +FD   AS  TWIFT+ RNRRIDL R  +R +    D        ++ +  L  Q    ++   L  LP +QRE++ KCY    S REIA  +GLP+GT+KSR RLA E++R A G
Sbjct:   84 PAVAEDCAQDVMVSVWRKAHLFDPTRASVSTWIFTIARNRRIDLARKDKRPE--PEDLGWGPEPEQAQDDGLALQQESEQLGQALAALPSKQRELIEKCYFGDLSHREIADATGLPLGTIKSRIRLALEKLRHAMG 217          
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: W9GY01_9PROT (RNA polymerase sigma factor n=1 Tax=Skermanella stibiiresistens SB22 TaxID=1385369 RepID=W9GY01_9PROT)

HSP 1 Score: 105 bits (263), Expect = 6.320e-26
Identity = 60/133 (45.11%), Postives = 78/133 (58.65%), Query Frame = 1
Query:   19 ENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAAQREQRLVADYARSEAGAESYEVDLLAQAFGARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVRAAFGE 417
            + ++QDV L VWRKA  +D   AS   WIFT+ RNRRIDL R  +R +    D A      E  E  L     GA++   + +LP EQ E L + +   +SQ + A+ESGLP+GTVKSR RLAF R+R A  E
Sbjct:   59 DEIIQDVMLTVWRKAGDYDPDRASPAAWIFTIARNRRIDLLRTERRPELDPHDPALRPVEGEDAETALGRLELGAKLLRAIEDLPKEQEEALFETFFRDRSQGDYAEESGLPLGTVKSRLRLAFARLRLALEE 191          
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: A0A2M9DCV0_9RHOB (RNA polymerase sigma-70 factor (ECF subfamily) n=2 Tax=Brevirhabdus pacifica TaxID=1267768 RepID=A0A2M9DCV0_9RHOB)

HSP 1 Score: 105 bits (263), Expect = 8.100e-26
Identity = 61/136 (44.85%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    7 PADTENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAAQREQRLVADYARSEAGAESYEVDLLAQAFGARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVRAAFG 414
            PA  E+ +QDV   VWRKAA FD   AS   WIFT+ RNRRIDL R  +R +    D A     A      L  Q   AR+A  L +LP  QR+V+++ Y    S  +IA  +GLP+GT+KSR +LA +R+R A G
Sbjct:   68 PALAEDCMQDVMATVWRKAAQFDPARASLAAWIFTIARNRRIDLLRRERRPE--AEDLAWGPQAAPEAAEALALQQDAARLARALSDLPEAQRQVIVQAYFGDLSHAQIAARTGLPLGTIKSRTKLALDRLRHAMG 201          
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: A0A2E3WG93_9GAMM (RNA polymerase subunit sigma n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E3WG93_9GAMM)

HSP 1 Score: 104 bits (260), Expect = 1.450e-25
Identity = 58/131 (44.27%), Postives = 85/131 (64.89%), Query Frame = 1
Query:   13 DTENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAAQREQRLVADYARSEAGAESYEVDLLAQAFG-ARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVR 402
            ++EN+ QD  L +WRKA +FD + +SARTW++ +VRNR ID+QR   R  R    Y R ++G +      +   F   ++A +L ELP EQ + L+  YV+G S +EIA E GLP+GTVKSR R+ F+R++
Sbjct:   52 ESENITQDAMLSIWRKADLFDPKKSSARTWVYAIVRNRLIDVQRKTTRIDRGNDKY-RFQSGNDFVSNGGVDAEFAQTQVAKLLKELPKEQSQPLLMSYVKGMSHKEIADEIGLPLGTVKSRIRIGFQRLQ 181          
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: UPI0019B0FF1E (RNA polymerase sigma factor n=2 Tax=Saccharospirillum salsuginis TaxID=418750 RepID=UPI0019B0FF1E)

HSP 1 Score: 105 bits (261), Expect = 1.870e-25
Identity = 55/132 (41.67%), Postives = 85/132 (64.39%), Query Frame = 1
Query:   19 ENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRID-LQRAAQREQRLVADYARSEAGAESYEVDLLAQAFGARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVRAAF 411
            + L+QDV L +WRKAA +D R A+A TWIFT+ RN+RID L+R ++ +  + AD      G      ++       ++   L ELP++QR+V+ K ++E KS +E+A E GLP+GTVKSR RLA ++++ + 
Sbjct:   73 DELVQDVMLAIWRKAASYDRRKAAASTWIFTIARNQRIDTLRRLSKYQNDISADEIWDLEGDTELFGEIRQSRVQTQVRDQLKELPVDQRQVMAKVFLEDKSHQEVASEMGLPLGTVKSRVRLAMKKLKLSL 204          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2W5QLY7_RHOSU1.350e-2848.92RNA polymerase sigma factor n=1 Tax=Rhodovulum sul... [more]
A0A2H6AY82_9BACT6.530e-2847.48RNA polymerase sigma factor n=1 Tax=bacterium HR40... [more]
A0A2E8VTA7_9GAMM6.810e-2745.38RNA polymerase subunit sigma n=2 Tax=Gammaproteoba... [more]
UPI001678E9E82.080e-2647.66sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
UPI001AE9A4094.250e-2646.62sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A0A0EHR9_9RHOB5.700e-2644.85RNA polymerase sigma factor RpoE n=2 Tax=Pseudooce... [more]
W9GY01_9PROT6.320e-2645.11RNA polymerase sigma factor n=1 Tax=Skermanella st... [more]
A0A2M9DCV0_9RHOB8.100e-2644.85RNA polymerase sigma-70 factor (ECF subfamily) n=2... [more]
A0A2E3WG93_9GAMM1.450e-2544.27RNA polymerase subunit sigma n=1 Tax=Gammaproteoba... [more]
UPI0019B0FF1E1.870e-2541.67RNA polymerase sigma factor n=2 Tax=Saccharospiril... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57479contigP-wetherbeei_contig57479:84..509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1461694.ATO9_06605
Preferred namerpoE
PFAMsSigma70_r2,Sigma70_r4,Sigma70_r4_2
Model size426
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03088
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.35e-27
EggNOG OGsCOG1595@1|root,COG1595@2|Bacteria,1RHRR@1224|Proteobacteria,2U9G0@28211|Alphaproteobacteria,2PDZX@252301|Oceanicola
DescriptionBelongs to the sigma-70 factor family. ECF subfamily
Cds size426
COG categoryK
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186852.3399475-CDS-P-wetherbeei_contig57479:83..5091683186852.3399475-CDS-P-wetherbeei_contig57479:83..509Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57479 84..509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57479.1.1prot_P-wetherbeei_contig57479.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57479 84..509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57479.1.1

>prot_P-wetherbeei_contig57479.1.1 ID=prot_P-wetherbeei_contig57479.1.1|Name=mRNA_P-wetherbeei_contig57479.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
MAPADTENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAA
QREQRLVADYARSEAGAESYEVDLLAQAFGARIAAMLVELPIEQREVLIK
CYVEGKSQREIAQESGLPIGTVKSRARLAFERVRAAFGEGR*
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mRNA from alignment at P-wetherbeei_contig57479:84..509-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57479.1.1 ID=mRNA_P-wetherbeei_contig57479.1.1|Name=mRNA_P-wetherbeei_contig57479.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig57479:84..509- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCGGCCGACACCGAGAATCTGCTGCAGGATGTATTCCTGGTGGT GTGGCGCAAGGCGGCGATGTTCGATGCACGCTTGGCCTCGGCGCGCACCT GGATATTCACCCTGGTGCGCAACCGCCGTATCGATCTGCAGCGCGCTGCC CAGCGCGAGCAGCGCCTGGTCGCCGATTACGCGCGTAGCGAAGCGGGCGC CGAGAGTTACGAGGTCGACCTGCTGGCGCAGGCCTTTGGTGCGCGCATTG CGGCGATGCTGGTCGAGTTGCCGATAGAACAACGTGAAGTGCTGATTAAA TGCTATGTGGAAGGCAAGTCGCAGCGTGAGATAGCGCAGGAGAGCGGGCT GCCTATCGGCACGGTCAAATCGCGCGCGCGGCTGGCCTTTGAGCGCGTGC GTGCCGCGTTCGGAGAAGGACGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57479:84..509-

>mRNA_P-wetherbeei_contig57479.1.1 ID=mRNA_P-wetherbeei_contig57479.1.1|Name=mRNA_P-wetherbeei_contig57479.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig57479:84..509- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCGGCCGACACCGAGAATCTGCTGCAGGATGTATTCCTGGTGGT
GTGGCGCAAGGCGGCGATGTTCGATGCACGCTTGGCCTCGGCGCGCACCT
GGATATTCACCCTGGTGCGCAACCGCCGTATCGATCTGCAGCGCGCTGCC
CAGCGCGAGCAGCGCCTGGTCGCCGATTACGCGCGTAGCGAAGCGGGCGC
CGAGAGTTACGAGGTCGACCTGCTGGCGCAGGCCTTTGGTGCGCGCATTG
CGGCGATGCTGGTCGAGTTGCCGATAGAACAACGTGAAGTGCTGATTAAA
TGCTATGTGGAAGGCAAGTCGCAGCGTGAGATAGCGCAGGAGAGCGGGCT
GCCTATCGGCACGGTCAAATCGCGCGCGCGGCTGGCCTTTGAGCGCGTGC
GTGCCGCGTTCGGAGAAGGACGATGA
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