mRNA_P-wetherbeei_contig57479.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: A0A2W5QLY7_RHOSU (RNA polymerase sigma factor n=1 Tax=Rhodovulum sulfidophilum TaxID=35806 RepID=A0A2W5QLY7_RHOSU) HSP 1 Score: 112 bits (281), Expect = 1.350e-28 Identity = 68/139 (48.92%), Postives = 86/139 (61.87%), Query Frame = 1
Query: 10 ADTENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAAQREQRLVAD-YARSEAGAESYE-VDLLAQAFGARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVRAAFGEG 420
AD + + QDV ++VWR+A FD A+A TWIFT+ RNRRID+ R R D + E + ++ +D AQA ARI A L ELP EQR VL+ + +G S EIA GLP+GTVKSR RLAF +R A GEG
Sbjct: 52 ADADEIAQDVMVLVWRRAETFDPGRAAASTWIFTIARNRRIDILRRTSRPAPDPEDPLFQPEPEPDGFQRID--AQAREARIRAELEELPAEQRAVLVAAFYDGLSHAEIADRLGLPLGTVKSRIRLAFRHLRGALGEG 188
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: A0A2H6AY82_9BACT (RNA polymerase sigma factor n=1 Tax=bacterium HR40 TaxID=2035435 RepID=A0A2H6AY82_9BACT) HSP 1 Score: 110 bits (276), Expect = 6.530e-28 Identity = 66/139 (47.48%), Postives = 87/139 (62.59%), Query Frame = 1
Query: 7 PAD-TENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAAQREQRLVADYARSEAGAESYEVDLLA---QAFGARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVRAAF 411
PAD E+L Q+V L VWR+A FD R A+A TWIFT+ RNRRIDL R + E + + E E++ D+ A + R+ + LP EQ EVL + ++EGK+Q EIA E GLP+GTVKSR RLA R+R+ F
Sbjct: 49 PADRAEDLAQEVMLTVWRRAPTFDPRKATASTWIFTIARNRRIDLLRRQEPES-MALEAGEEEEPEETFLADIEASDARLMRERLEEAIAHLPSEQAEVLRRFFLEGKAQGEIADELGLPLGTVKSRLRLALARLRSYF 186
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: A0A2E8VTA7_9GAMM (RNA polymerase subunit sigma n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8VTA7_9GAMM) HSP 1 Score: 109 bits (273), Expect = 6.810e-27 Identity = 59/130 (45.38%), Postives = 83/130 (63.85%), Query Frame = 1
Query: 13 DTENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAAQREQRLVADYARSEAGAESYEVDLLAQAFGARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVR 402
+++N++QD L VW+KA F L+SARTW+F +VRNR IDLQR A RE + A + + + +R+ AML LP E +VL+ Y+EGKS REI+ E+GLP+GTVKSR RL F +++
Sbjct: 111 ESDNIVQDAMLSVWQKAHSFRPELSSARTWVFAIVRNRMIDLQRMAVREAKGKDRIKTLSAAPDVSNGGVEGDSVRSRLEAMLSVLPAEHAQVLVMSYLEGKSHREISTETGLPLGTVKSRIRLGFHKLQ 240
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: UPI001678E9E8 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI001678E9E8) HSP 1 Score: 107 bits (266), Expect = 2.080e-26 Identity = 61/128 (47.66%), Postives = 80/128 (62.50%), Query Frame = 1
Query: 19 ENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAAQREQRLVADYARSEAGAESYEVDLLAQAFGARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVR 402
E ++Q+V L VWRKAA FD R ASA TWIFT+ RNRRID R +R + D A G + + A R+ A + LP EQ +++ + Y E +S REIA+ SGLP+GTVKSR RLA +R+R
Sbjct: 56 EEVVQEVMLTVWRKAASFDRRQASAGTWIFTIARNRRIDRLRRERRPEFDPNDPALVPEGPADADRTVWAGQIEGRVRAAIESLPPEQSDLIRRAYFEDQSHREIAETSGLPLGTVKSRIRLAMQRLR 183
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: UPI001AE9A409 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Azospirillum rugosum TaxID=416170 RepID=UPI001AE9A409) HSP 1 Score: 106 bits (264), Expect = 4.250e-26 Identity = 62/133 (46.62%), Postives = 81/133 (60.90%), Query Frame = 1
Query: 19 ENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAAQREQRLVADYARSEAGAESYEVDLLAQAFGARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVRAAFGE 417
E L+QDV L VW++A FD LASA TWI+T+ RNRRID R +R + D GA + + A +R+ A++ +LP EQ EVL Y E K EI+ E G+P+GTVK+R RLA R+R AFGE
Sbjct: 57 EELVQDVMLTVWQRADTFDPDLASAATWIYTIARNRRIDRIRQERRPELHPDDSMLDGDGAPPPDHQVQAAQEASRLRAVIGDLPPEQAEVLRLAYYEDKVHSEISVEQGIPLGTVKTRLRLALVRLRRAFGE 189
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: A0A0A0EHR9_9RHOB (RNA polymerase sigma factor RpoE n=2 Tax=Pseudooceanicola atlanticus TaxID=1461694 RepID=A0A0A0EHR9_9RHOB) HSP 1 Score: 106 bits (265), Expect = 5.700e-26 Identity = 61/136 (44.85%), Postives = 80/136 (58.82%), Query Frame = 1
Query: 7 PADTENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAAQREQRLVADYARSEAGAESYEVDLLAQAFGARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVRAAFG 414
PA E+ QDV + VWRKA +FD AS TWIFT+ RNRRIDL R +R + D ++ + L Q ++ L LP +QRE++ KCY S REIA +GLP+GT+KSR RLA E++R A G
Sbjct: 84 PAVAEDCAQDVMVSVWRKAHLFDPTRASVSTWIFTIARNRRIDLARKDKRPE--PEDLGWGPEPEQAQDDGLALQQESEQLGQALAALPSKQRELIEKCYFGDLSHREIADATGLPLGTIKSRIRLALEKLRHAMG 217
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: W9GY01_9PROT (RNA polymerase sigma factor n=1 Tax=Skermanella stibiiresistens SB22 TaxID=1385369 RepID=W9GY01_9PROT) HSP 1 Score: 105 bits (263), Expect = 6.320e-26 Identity = 60/133 (45.11%), Postives = 78/133 (58.65%), Query Frame = 1
Query: 19 ENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAAQREQRLVADYARSEAGAESYEVDLLAQAFGARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVRAAFGE 417
+ ++QDV L VWRKA +D AS WIFT+ RNRRIDL R +R + D A E E L GA++ + +LP EQ E L + + +SQ + A+ESGLP+GTVKSR RLAF R+R A E
Sbjct: 59 DEIIQDVMLTVWRKAGDYDPDRASPAAWIFTIARNRRIDLLRTERRPELDPHDPALRPVEGEDAETALGRLELGAKLLRAIEDLPKEQEEALFETFFRDRSQGDYAEESGLPLGTVKSRLRLAFARLRLALEE 191
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: A0A2M9DCV0_9RHOB (RNA polymerase sigma-70 factor (ECF subfamily) n=2 Tax=Brevirhabdus pacifica TaxID=1267768 RepID=A0A2M9DCV0_9RHOB) HSP 1 Score: 105 bits (263), Expect = 8.100e-26 Identity = 61/136 (44.85%), Postives = 79/136 (58.09%), Query Frame = 1
Query: 7 PADTENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAAQREQRLVADYARSEAGAESYEVDLLAQAFGARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVRAAFG 414
PA E+ +QDV VWRKAA FD AS WIFT+ RNRRIDL R +R + D A A L Q AR+A L +LP QR+V+++ Y S +IA +GLP+GT+KSR +LA +R+R A G
Sbjct: 68 PALAEDCMQDVMATVWRKAAQFDPARASLAAWIFTIARNRRIDLLRRERRPE--AEDLAWGPQAAPEAAEALALQQDAARLARALSDLPEAQRQVIVQAYFGDLSHAQIAARTGLPLGTIKSRTKLALDRLRHAMG 201
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: A0A2E3WG93_9GAMM (RNA polymerase subunit sigma n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E3WG93_9GAMM) HSP 1 Score: 104 bits (260), Expect = 1.450e-25 Identity = 58/131 (44.27%), Postives = 85/131 (64.89%), Query Frame = 1
Query: 13 DTENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAAQREQRLVADYARSEAGAESYEVDLLAQAFG-ARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVR 402
++EN+ QD L +WRKA +FD + +SARTW++ +VRNR ID+QR R R Y R ++G + + F ++A +L ELP EQ + L+ YV+G S +EIA E GLP+GTVKSR R+ F+R++
Sbjct: 52 ESENITQDAMLSIWRKADLFDPKKSSARTWVYAIVRNRLIDVQRKTTRIDRGNDKY-RFQSGNDFVSNGGVDAEFAQTQVAKLLKELPKEQSQPLLMSYVKGMSHKEIADEIGLPLGTVKSRIRIGFQRLQ 181
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Match: UPI0019B0FF1E (RNA polymerase sigma factor n=2 Tax=Saccharospirillum salsuginis TaxID=418750 RepID=UPI0019B0FF1E) HSP 1 Score: 105 bits (261), Expect = 1.870e-25 Identity = 55/132 (41.67%), Postives = 85/132 (64.39%), Query Frame = 1
Query: 19 ENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRID-LQRAAQREQRLVADYARSEAGAESYEVDLLAQAFGARIAAMLVELPIEQREVLIKCYVEGKSQREIAQESGLPIGTVKSRARLAFERVRAAF 411
+ L+QDV L +WRKAA +D R A+A TWIFT+ RN+RID L+R ++ + + AD G ++ ++ L ELP++QR+V+ K ++E KS +E+A E GLP+GTVKSR RLA ++++ +
Sbjct: 73 DELVQDVMLAIWRKAASYDRRKAAASTWIFTIARNQRIDTLRRLSKYQNDISADEIWDLEGDTELFGEIRQSRVQTQVRDQLKELPVDQRQVMAKVFLEDKSHQEVASEMGLPLGTVKSRVRLAMKKLKLSL 204 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57479.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig57479.1.1 >prot_P-wetherbeei_contig57479.1.1 ID=prot_P-wetherbeei_contig57479.1.1|Name=mRNA_P-wetherbeei_contig57479.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp MAPADTENLLQDVFLVVWRKAAMFDARLASARTWIFTLVRNRRIDLQRAAback to top mRNA from alignment at P-wetherbeei_contig57479:84..509- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig57479.1.1 ID=mRNA_P-wetherbeei_contig57479.1.1|Name=mRNA_P-wetherbeei_contig57479.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig57479:84..509- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig57479:84..509- >mRNA_P-wetherbeei_contig57479.1.1 ID=mRNA_P-wetherbeei_contig57479.1.1|Name=mRNA_P-wetherbeei_contig57479.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig57479:84..509- (Phaeothamnion wetherbeei SAG_119_79)back to top |