mRNA_P-wetherbeei_contig57252.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: A0A7C4XY25_9HYPH (50S ribosomal protein L2 n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XY25_9HYPH) HSP 1 Score: 290 bits (743), Expect = 4.160e-97 Identity = 144/170 (84.71%), Postives = 159/170 (93.53%), Query Frame = 1
Query: 1 RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 510
RN GRIT+RH+GGGH+Q+YRLVDFRRRK DV AKVERLEYDPNRTAFIAL++YEDGE++YILAPQRLA GDTVVSG +VDVKPGNAMPLSAMPIGTIVHNVE+KPGRGGQ AR+AG+Y QLVGRD+GWAIL+M SGETRRVRAECMA+VGAVSNPDNSNQV GKAGR R
Sbjct: 43 RNSDGRITTRHIGGGHKQAYRLVDFRRRKFDVPAKVERLEYDPNRTAFIALLKYEDGELAYILAPQRLAPGDTVVSGNRVDVKPGNAMPLSAMPIGTIVHNVELKPGRGGQLARSAGAYAQLVGRDAGWAILKMKSGETRRVRAECMASVGAVSNPDNSNQVIGKAGRAR 212
BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: A0A2S5P4K2_HYPSQ (50S ribosomal protein L2 n=2 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5P4K2_HYPSQ) HSP 1 Score: 285 bits (730), Expect = 3.940e-95 Identity = 139/170 (81.76%), Postives = 160/170 (94.12%), Query Frame = 1
Query: 1 RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 510
RN GRIT+RH+GGGH+Q+YRL+DFRRRKADV A VER+EYDPNR+AFIAL++YEDGE+SYILAPQRLA+GD VVSGAKVDVKPGNAM L+ MPIGTIVHNVE+KPGRGGQ AR+AG++VQLVGRDSGWA+L++NSGETR+VRAECMATVGAVSNPD+SN V GKAGRTR
Sbjct: 43 RNSDGRITTRHIGGGHKQAYRLIDFRRRKADVTAGVERIEYDPNRSAFIALLKYEDGELSYILAPQRLAVGDKVVSGAKVDVKPGNAMQLANMPIGTIVHNVEMKPGRGGQIARSAGAFVQLVGRDSGWAVLKLNSGETRKVRAECMATVGAVSNPDHSNTVLGKAGRTR 212
BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: V5SFN0_9HYPH (50S ribosomal protein L2 n=3 Tax=Hyphomicrobium TaxID=81 RepID=V5SFN0_9HYPH) HSP 1 Score: 284 bits (726), Expect = 1.710e-94 Identity = 137/170 (80.59%), Postives = 159/170 (93.53%), Query Frame = 1
Query: 1 RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 510
RN GRIT+RH+GGGH+QSYRL+DFRRRK DV A VERLEYDPNRTAFIALI+Y DG +SYILAPQRLA+GD VVSGAKVDVKPGNAMPLS MPIGTIVHNVE+KPG GGQ AR+AG++VQLVGRD+GWA+L++NSGETR+VR++CMA+VGAVSNPD++N+VTGKAGRTR
Sbjct: 43 RNSDGRITTRHIGGGHKQSYRLIDFRRRKHDVVATVERLEYDPNRTAFIALIKYADGHLSYILAPQRLAVGDQVVSGAKVDVKPGNAMPLSGMPIGTIVHNVELKPGAGGQIARSAGAFVQLVGRDAGWAVLKLNSGETRKVRSDCMASVGAVSNPDHTNEVTGKAGRTR 212
BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: A0A109BNC9_HYPSL (50S ribosomal protein L2 n=5 Tax=Hyphomicrobium TaxID=81 RepID=A0A109BNC9_HYPSL) HSP 1 Score: 282 bits (722), Expect = 6.480e-94 Identity = 137/170 (80.59%), Postives = 158/170 (92.94%), Query Frame = 1
Query: 1 RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 510
RN GRIT+RH+GGGH+++YRLVDFRRRK DV A VERLEYDPNR+AFIALI+YEDGE+SYILAPQRL+ GD V+SG KVDVKPGNAMPL+ MPIGTIVHNVE+K GRGGQ AR+AG++VQLVGRD+GWAIL++NSGETRRVRAECMAT+GAVSNPD+SN+V GKAGRTR
Sbjct: 43 RNNAGRITTRHIGGGHKRAYRLVDFRRRKFDVPATVERLEYDPNRSAFIALIKYEDGELSYILAPQRLSAGDQVISGEKVDVKPGNAMPLAGMPIGTIVHNVELKSGRGGQIARSAGAFVQLVGRDAGWAILKLNSGETRRVRAECMATIGAVSNPDHSNEVVGKAGRTR 212
BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: A0A2S5MWA8_HYPSQ (50S ribosomal protein L2 n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A2S5MWA8_HYPSQ) HSP 1 Score: 281 bits (718), Expect = 2.810e-93 Identity = 135/170 (79.41%), Postives = 159/170 (93.53%), Query Frame = 1
Query: 1 RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 510
RN GRIT+RH+GGGH+Q YR VDFRRRK D+ A VERLEYDPNRTAFIALI+YEDG +SYILAPQRLA+GD+VV+GAKVDVKPGNAMPL+AMP+GTI+HNVE+KPGRGGQ AR+AGS+VQLVGRD+GWA+L++NSGETR+VRA+CMA++GAVSNPD+ NQVT KAGRTR
Sbjct: 43 RNSDGRITTRHIGGGHKQLYRRVDFRRRKFDMPAVVERLEYDPNRTAFIALIKYEDGTLSYILAPQRLAVGDSVVAGAKVDVKPGNAMPLAAMPLGTIIHNVELKPGRGGQMARSAGSFVQLVGRDAGWAVLKLNSGETRKVRADCMASIGAVSNPDHMNQVTAKAGRTR 212
BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: A0A2W4MUF9_9PROT (50S ribosomal protein L2 n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4MUF9_9PROT) HSP 1 Score: 277 bits (708), Expect = 5.120e-92 Identity = 135/165 (81.82%), Postives = 153/165 (92.73%), Query Frame = 1
Query: 16 RITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 510
RI +RH+GGGH+++YRL+DFRRR+ D A V RLEYDPNRTAFIAL++YEDG +SYILAPQRLA+GDTVVSG KVDVKPGNAMPL+ MPIGTIVHNVE+KPGRGGQ ARAAGSYVQLVGRD+GWAIL++NSGETRRVRAECMATVGAVSNPD+SNQ+ GKAGR R
Sbjct: 32 RIPTRHIGGGHKRTYRLIDFRRRRFDQPATVVRLEYDPNRTAFIALVKYEDGTLSYILAPQRLAVGDTVVSGEKVDVKPGNAMPLANMPIGTIVHNVELKPGRGGQLARAAGSYVQLVGRDAGWAILKLNSGETRRVRAECMATVGAVSNPDHSNQIIGKAGRNR 196
BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: A0A2D7FFI1_9HYPH (50S ribosomal protein L2 n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A2D7FFI1_9HYPH) HSP 1 Score: 277 bits (708), Expect = 9.290e-92 Identity = 133/170 (78.24%), Postives = 156/170 (91.76%), Query Frame = 1
Query: 1 RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 510
RN GRITSRH+GGGH+Q+YR +DFRRRKADV A VER+EYDPNRTAFIALI+Y+DG +SYILAPQRLA GD V+SG KVDVKPGNAMPL++MPIGTI+HNVE+KPG+GGQ AR+AG+YVQLVGRD+GWAIL++NSGETRRV + CMA+VGAVSNPD+SN V GKAGR+R
Sbjct: 43 RNNTGRITSRHIGGGHKQAYRKIDFRRRKADVPATVERIEYDPNRTAFIALIKYDDGVLSYILAPQRLAAGDQVISGEKVDVKPGNAMPLASMPIGTIIHNVELKPGKGGQIARSAGAYVQLVGRDAGWAILKLNSGETRRVNSACMASVGAVSNPDHSNTVVGKAGRSR 212
BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: A0A7Y5CW44_HYPSQ (50S ribosomal protein L2 n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A7Y5CW44_HYPSQ) HSP 1 Score: 276 bits (706), Expect = 1.750e-91 Identity = 133/170 (78.24%), Postives = 158/170 (92.94%), Query Frame = 1
Query: 1 RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 510
RN GRITSRH+GGGH+Q+YR +DF+RRK D AKVERLEYDPNRT+FIAL++YEDG +SYILAPQRLA+GD+VVSGAKVDVKPGN MPLSAMP+GTIVHNVE+KPG+GGQ AR+AG++VQLVGRD+G+A+L++NSGETR+V A+CMATVGAVSNPD+ N VTGKAGRTR
Sbjct: 43 RNSDGRITSRHIGGGHKQAYRKIDFKRRKFDSPAKVERLEYDPNRTSFIALVKYEDGTLSYILAPQRLAVGDSVVSGAKVDVKPGNCMPLSAMPVGTIVHNVEMKPGKGGQMARSAGAFVQLVGRDAGYAVLKLNSGETRKVPADCMATVGAVSNPDHMNAVTGKAGRTR 212
BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: A0A679JVV4_9HYPH (50S ribosomal protein L2 n=10 Tax=Hyphomicrobium TaxID=81 RepID=A0A679JVV4_9HYPH) HSP 1 Score: 276 bits (705), Expect = 2.570e-91 Identity = 138/170 (81.18%), Postives = 155/170 (91.18%), Query Frame = 1
Query: 1 RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 510
RN GRITSRH+GGG +QSYR +DFRRRK D A VERLEYDPNRTAFIALI+YEDG SYILAPQRLA+GD+VV+G KVDVKPGNAMPLSAMPIGTIVHNVE+KPG+GGQ AR+AGS+VQLVGRDSG+A+LR+NSGETR+V A+CMATVGAVSNPD+ N VTGKAGRTR
Sbjct: 43 RNSDGRITSRHIGGGAKQSYRRIDFRRRKFDSPASVERLEYDPNRTAFIALIKYEDGTQSYILAPQRLAVGDSVVAGPKVDVKPGNAMPLSAMPIGTIVHNVEMKPGKGGQVARSAGSFVQLVGRDSGYAVLRLNSGETRKVSADCMATVGAVSNPDHMNTVTGKAGRTR 212
BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: A0A2W4T3T5_9PROT (50S ribosomal protein L2 n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4T3T5_9PROT) HSP 1 Score: 272 bits (696), Expect = 5.800e-90 Identity = 131/170 (77.06%), Postives = 154/170 (90.59%), Query Frame = 1
Query: 1 RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 510
RN GRIT+RH+GGGH+++YRL+DFRRR+ + A VERLEYDPNR+AFIAL++Y DG++SYILAPQRLA GDTV+SG KVDVKPGNAMPL+ MPIGTI+HNVE+KPG GGQ AR+AGSY QLVGRD GWAIL+++SGETR+VRAECMATVGAVSNPD+SNQV GKAGR R
Sbjct: 43 RNNTGRITTRHIGGGHKRAYRLIDFRRRRFNEPATVERLEYDPNRSAFIALVKYPDGQLSYILAPQRLAAGDTVISGEKVDVKPGNAMPLANMPIGTIIHNVELKPGAGGQLARSAGSYAQLVGRDGGWAILKLSSGETRQVRAECMATVGAVSNPDHSNQVIGKAGRNR 212 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig57252.1.1 >prot_P-wetherbeei_contig57252.1.1 ID=prot_P-wetherbeei_contig57252.1.1|Name=mRNA_P-wetherbeei_contig57252.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIAback to top mRNA from alignment at P-wetherbeei_contig57252:2..511+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig57252.1.1 ID=mRNA_P-wetherbeei_contig57252.1.1|Name=mRNA_P-wetherbeei_contig57252.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57252:2..511+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig57252:2..511+ >mRNA_P-wetherbeei_contig57252.1.1 ID=mRNA_P-wetherbeei_contig57252.1.1|Name=mRNA_P-wetherbeei_contig57252.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57252:2..511+ (Phaeothamnion wetherbeei SAG_119_79)back to top |