prot_P-wetherbeei_contig57252.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig57252.1.1
Unique Nameprot_P-wetherbeei_contig57252.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length170
Homology
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BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: A0A7C4XY25_9HYPH (50S ribosomal protein L2 n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XY25_9HYPH)

HSP 1 Score: 290 bits (743), Expect = 4.160e-97
Identity = 144/170 (84.71%), Postives = 159/170 (93.53%), Query Frame = 0 
Query:    1 RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 170
            RN  GRIT+RH+GGGH+Q+YRLVDFRRRK DV AKVERLEYDPNRTAFIAL++YEDGE++YILAPQRLA GDTVVSG +VDVKPGNAMPLSAMPIGTIVHNVE+KPGRGGQ AR+AG+Y QLVGRD+GWAIL+M SGETRRVRAECMA+VGAVSNPDNSNQV GKAGR R
Sbjct:   43 RNSDGRITTRHIGGGHKQAYRLVDFRRRKFDVPAKVERLEYDPNRTAFIALLKYEDGELAYILAPQRLAPGDTVVSGNRVDVKPGNAMPLSAMPIGTIVHNVELKPGRGGQLARSAGAYAQLVGRDAGWAILKMKSGETRRVRAECMASVGAVSNPDNSNQVIGKAGRAR 212
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BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: A0A2S5P4K2_HYPSQ (50S ribosomal protein L2 n=2 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5P4K2_HYPSQ)

HSP 1 Score: 285 bits (730), Expect = 3.940e-95
Identity = 139/170 (81.76%), Postives = 160/170 (94.12%), Query Frame = 0 
Query:    1 RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 170
            RN  GRIT+RH+GGGH+Q+YRL+DFRRRKADV A VER+EYDPNR+AFIAL++YEDGE+SYILAPQRLA+GD VVSGAKVDVKPGNAM L+ MPIGTIVHNVE+KPGRGGQ AR+AG++VQLVGRDSGWA+L++NSGETR+VRAECMATVGAVSNPD+SN V GKAGRTR
Sbjct:   43 RNSDGRITTRHIGGGHKQAYRLIDFRRRKADVTAGVERIEYDPNRSAFIALLKYEDGELSYILAPQRLAVGDKVVSGAKVDVKPGNAMQLANMPIGTIVHNVEMKPGRGGQIARSAGAFVQLVGRDSGWAVLKLNSGETRKVRAECMATVGAVSNPDHSNTVLGKAGRTR 212
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BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: V5SFN0_9HYPH (50S ribosomal protein L2 n=3 Tax=Hyphomicrobium TaxID=81 RepID=V5SFN0_9HYPH)

HSP 1 Score: 284 bits (726), Expect = 1.710e-94
Identity = 137/170 (80.59%), Postives = 159/170 (93.53%), Query Frame = 0 
Query:    1 RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 170
            RN  GRIT+RH+GGGH+QSYRL+DFRRRK DV A VERLEYDPNRTAFIALI+Y DG +SYILAPQRLA+GD VVSGAKVDVKPGNAMPLS MPIGTIVHNVE+KPG GGQ AR+AG++VQLVGRD+GWA+L++NSGETR+VR++CMA+VGAVSNPD++N+VTGKAGRTR
Sbjct:   43 RNSDGRITTRHIGGGHKQSYRLIDFRRRKHDVVATVERLEYDPNRTAFIALIKYADGHLSYILAPQRLAVGDQVVSGAKVDVKPGNAMPLSGMPIGTIVHNVELKPGAGGQIARSAGAFVQLVGRDAGWAVLKLNSGETRKVRSDCMASVGAVSNPDHTNEVTGKAGRTR 212
[Close]
BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: A0A109BNC9_HYPSL (50S ribosomal protein L2 n=5 Tax=Hyphomicrobium TaxID=81 RepID=A0A109BNC9_HYPSL)

HSP 1 Score: 282 bits (722), Expect = 6.480e-94
Identity = 137/170 (80.59%), Postives = 158/170 (92.94%), Query Frame = 0 
Query:    1 RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 170
            RN  GRIT+RH+GGGH+++YRLVDFRRRK DV A VERLEYDPNR+AFIALI+YEDGE+SYILAPQRL+ GD V+SG KVDVKPGNAMPL+ MPIGTIVHNVE+K GRGGQ AR+AG++VQLVGRD+GWAIL++NSGETRRVRAECMAT+GAVSNPD+SN+V GKAGRTR
Sbjct:   43 RNNAGRITTRHIGGGHKRAYRLVDFRRRKFDVPATVERLEYDPNRSAFIALIKYEDGELSYILAPQRLSAGDQVISGEKVDVKPGNAMPLAGMPIGTIVHNVELKSGRGGQIARSAGAFVQLVGRDAGWAILKLNSGETRRVRAECMATIGAVSNPDHSNEVVGKAGRTR 212
[Close]
BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: A0A2S5MWA8_HYPSQ (50S ribosomal protein L2 n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A2S5MWA8_HYPSQ)

HSP 1 Score: 281 bits (718), Expect = 2.810e-93
Identity = 135/170 (79.41%), Postives = 159/170 (93.53%), Query Frame = 0 
Query:    1 RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 170
            RN  GRIT+RH+GGGH+Q YR VDFRRRK D+ A VERLEYDPNRTAFIALI+YEDG +SYILAPQRLA+GD+VV+GAKVDVKPGNAMPL+AMP+GTI+HNVE+KPGRGGQ AR+AGS+VQLVGRD+GWA+L++NSGETR+VRA+CMA++GAVSNPD+ NQVT KAGRTR
Sbjct:   43 RNSDGRITTRHIGGGHKQLYRRVDFRRRKFDMPAVVERLEYDPNRTAFIALIKYEDGTLSYILAPQRLAVGDSVVAGAKVDVKPGNAMPLAAMPLGTIIHNVELKPGRGGQMARSAGSFVQLVGRDAGWAVLKLNSGETRKVRADCMASIGAVSNPDHMNQVTAKAGRTR 212
[Close]
BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: A0A2W4MUF9_9PROT (50S ribosomal protein L2 n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4MUF9_9PROT)

HSP 1 Score: 277 bits (708), Expect = 5.120e-92
Identity = 135/165 (81.82%), Postives = 153/165 (92.73%), Query Frame = 0 
Query:    6 RITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 170
            RI +RH+GGGH+++YRL+DFRRR+ D  A V RLEYDPNRTAFIAL++YEDG +SYILAPQRLA+GDTVVSG KVDVKPGNAMPL+ MPIGTIVHNVE+KPGRGGQ ARAAGSYVQLVGRD+GWAIL++NSGETRRVRAECMATVGAVSNPD+SNQ+ GKAGR R
Sbjct:   32 RIPTRHIGGGHKRTYRLIDFRRRRFDQPATVVRLEYDPNRTAFIALVKYEDGTLSYILAPQRLAVGDTVVSGEKVDVKPGNAMPLANMPIGTIVHNVELKPGRGGQLARAAGSYVQLVGRDAGWAILKLNSGETRRVRAECMATVGAVSNPDHSNQIIGKAGRNR 196
[Close]
BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: A0A2D7FFI1_9HYPH (50S ribosomal protein L2 n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A2D7FFI1_9HYPH)

HSP 1 Score: 277 bits (708), Expect = 9.290e-92
Identity = 133/170 (78.24%), Postives = 156/170 (91.76%), Query Frame = 0 
Query:    1 RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 170
            RN  GRITSRH+GGGH+Q+YR +DFRRRKADV A VER+EYDPNRTAFIALI+Y+DG +SYILAPQRLA GD V+SG KVDVKPGNAMPL++MPIGTI+HNVE+KPG+GGQ AR+AG+YVQLVGRD+GWAIL++NSGETRRV + CMA+VGAVSNPD+SN V GKAGR+R
Sbjct:   43 RNNTGRITSRHIGGGHKQAYRKIDFRRRKADVPATVERIEYDPNRTAFIALIKYDDGVLSYILAPQRLAAGDQVISGEKVDVKPGNAMPLASMPIGTIIHNVELKPGKGGQIARSAGAYVQLVGRDAGWAILKLNSGETRRVNSACMASVGAVSNPDHSNTVVGKAGRSR 212
[Close]
BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: A0A7Y5CW44_HYPSQ (50S ribosomal protein L2 n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A7Y5CW44_HYPSQ)

HSP 1 Score: 276 bits (706), Expect = 1.750e-91
Identity = 133/170 (78.24%), Postives = 158/170 (92.94%), Query Frame = 0 
Query:    1 RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 170
            RN  GRITSRH+GGGH+Q+YR +DF+RRK D  AKVERLEYDPNRT+FIAL++YEDG +SYILAPQRLA+GD+VVSGAKVDVKPGN MPLSAMP+GTIVHNVE+KPG+GGQ AR+AG++VQLVGRD+G+A+L++NSGETR+V A+CMATVGAVSNPD+ N VTGKAGRTR
Sbjct:   43 RNSDGRITSRHIGGGHKQAYRKIDFKRRKFDSPAKVERLEYDPNRTSFIALVKYEDGTLSYILAPQRLAVGDSVVSGAKVDVKPGNCMPLSAMPVGTIVHNVEMKPGKGGQMARSAGAFVQLVGRDAGYAVLKLNSGETRKVPADCMATVGAVSNPDHMNAVTGKAGRTR 212
[Close]
BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: A0A679JVV4_9HYPH (50S ribosomal protein L2 n=10 Tax=Hyphomicrobium TaxID=81 RepID=A0A679JVV4_9HYPH)

HSP 1 Score: 276 bits (705), Expect = 2.570e-91
Identity = 138/170 (81.18%), Postives = 155/170 (91.18%), Query Frame = 0 
Query:    1 RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 170
            RN  GRITSRH+GGG +QSYR +DFRRRK D  A VERLEYDPNRTAFIALI+YEDG  SYILAPQRLA+GD+VV+G KVDVKPGNAMPLSAMPIGTIVHNVE+KPG+GGQ AR+AGS+VQLVGRDSG+A+LR+NSGETR+V A+CMATVGAVSNPD+ N VTGKAGRTR
Sbjct:   43 RNSDGRITSRHIGGGAKQSYRRIDFRRRKFDSPASVERLEYDPNRTAFIALIKYEDGTQSYILAPQRLAVGDSVVAGPKVDVKPGNAMPLSAMPIGTIVHNVEMKPGKGGQVARSAGSFVQLVGRDSGYAVLRLNSGETRKVSADCMATVGAVSNPDHMNTVTGKAGRTR 212
[Close]
BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Match: A0A2W4T3T5_9PROT (50S ribosomal protein L2 n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4T3T5_9PROT)

HSP 1 Score: 272 bits (696), Expect = 5.800e-90
Identity = 131/170 (77.06%), Postives = 154/170 (90.59%), Query Frame = 0 
Query:    1 RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIALIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVHNVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATVGAVSNPDNSNQVTGKAGRTR 170
            RN  GRIT+RH+GGGH+++YRL+DFRRR+ +  A VERLEYDPNR+AFIAL++Y DG++SYILAPQRLA GDTV+SG KVDVKPGNAMPL+ MPIGTI+HNVE+KPG GGQ AR+AGSY QLVGRD GWAIL+++SGETR+VRAECMATVGAVSNPD+SNQV GKAGR R
Sbjct:   43 RNNTGRITTRHIGGGHKRAYRLIDFRRRRFNEPATVERLEYDPNRSAFIALVKYPDGQLSYILAPQRLAAGDTVISGEKVDVKPGNAMPLANMPIGTIIHNVELKPGAGGQLARSAGSYAQLVGRDGGWAILKLSSGETRQVRAECMATVGAVSNPDHSNQVIGKAGRNR 212
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57252.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4XY25_9HYPH4.160e-9784.7150S ribosomal protein L2 n=1 Tax=Hyphomicrobiales ... [more]
A0A2S5P4K2_HYPSQ3.940e-9581.7650S ribosomal protein L2 n=2 Tax=Hyphomicrobium sp... [more]
V5SFN0_9HYPH1.710e-9480.5950S ribosomal protein L2 n=3 Tax=Hyphomicrobium Ta... [more]
A0A109BNC9_HYPSL6.480e-9480.5950S ribosomal protein L2 n=5 Tax=Hyphomicrobium Ta... [more]
A0A2S5MWA8_HYPSQ2.810e-9379.4150S ribosomal protein L2 n=2 Tax=unclassified Hyph... [more]
A0A2W4MUF9_9PROT5.120e-9281.8250S ribosomal protein L2 n=1 Tax=Proteobacteria ba... [more]
A0A2D7FFI1_9HYPH9.290e-9278.2450S ribosomal protein L2 n=2 Tax=Hyphomicrobiaceae... [more]
A0A7Y5CW44_HYPSQ1.750e-9178.2450S ribosomal protein L2 n=1 Tax=Hyphomicrobium sp... [more]
A0A679JVV4_9HYPH2.570e-9181.1850S ribosomal protein L2 n=10 Tax=Hyphomicrobium T... [more]
A0A2W4T3T5_9PROT5.800e-9077.0650S ribosomal protein L2 n=1 Tax=Proteobacteria ba... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022669Ribosomal protein L2, C-terminalSMARTSM01382Ribosomal_L2_C_2coord: 82..170
e-value: 2.8E-33
score: 126.5
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 83..170
e-value: 3.4E-32
score: 111.3
IPR002171Ribosomal protein L2SMARTSM01383Ribosomal_L2_2coord: 1..76
e-value: 1.4E-37
score: 140.8
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 1..170
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 76..155
e-value: 2.2E-33
score: 116.0
IPR022666Ribosomal Proteins L2, RNA binding domainPFAMPF00181Ribosomal_L2coord: 1..76
e-value: 6.9E-30
score: 102.8
IPR005880Ribosomal protein L2, bacterial/organellar-typeTIGRFAMTIGR01171TIGR01171coord: 1..170
e-value: 2.9E-76
score: 254.4
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 1..75
e-value: 3.9E-31
score: 109.0
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 1..83
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 84..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57252contigP-wetherbeei_contig57252:2..511 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57252.1.1mRNA_P-wetherbeei_contig57252.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig57252 2..511 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig57252.1.1 ID=prot_P-wetherbeei_contig57252.1.1|Name=mRNA_P-wetherbeei_contig57252.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
RNGVGRITSRHVGGGHRQSYRLVDFRRRKADVAAKVERLEYDPNRTAFIA
LIRYEDGEMSYILAPQRLAIGDTVVSGAKVDVKPGNAMPLSAMPIGTIVH
NVEIKPGRGGQFARAAGSYVQLVGRDSGWAILRMNSGETRRVRAECMATV
GAVSNPDNSNQVTGKAGRTR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022669Ribosomal_L2_C
IPR002171Ribosomal_L2
IPR014722Rib_L2_dom2
IPR022666Rbsml_prot_L2_RNA-bd_dom
IPR005880Ribosomal_L2_bac/org-type
IPR012340NA-bd_OB-fold
IPR008991Translation_prot_SH3-like_sf