mRNA_P-wetherbeei_contig5675.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5675.1.1
Unique NamemRNA_P-wetherbeei_contig5675.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5675.1.1 vs. uniprot
Match: D7FTF5_ECTSI (NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTF5_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 9.210e-20
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 1
Query:   31 RKTATGLTGLAVDPNARANLIKVQQQVLEKIKIIPAGVAYRDAVEKTFSYRLKVAQDAEDEDKIEEEIGMGAPIQLEELIDEAK 282
            +KT+TGL GLAVD NARAN I +Q+Q+LEKIK+IP    YR  VE    YRLKVA + EDE+ IE+EI  G   QLEEL+ + K
Sbjct:   14 KKTSTGLVGLAVDVNARANFIALQKQILEKIKVIPDHAQYRKDVEAISGYRLKVATETEDEETIEDEINHG---QLEELLVDGK 94          
BLAST of mRNA_P-wetherbeei_contig5675.1.1 vs. uniprot
Match: A0A7S2BEJ1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BEJ1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.240e-19
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   34 KTATGLTGLAVDPNARANLIKVQQQVLEKIKIIPAGVAYRDAVEKTFSYRLKVAQDAEDEDKIEEEIGMGAPIQLEELIDEAK 282
            KT+TGL GL VD N RANLI +QQQ+LE +K IP   AYR +VE T +YRLKVA +  DE+ IE+ IG G   QLEELI++ K
Sbjct:   20 KTSTGLVGLKVDLNGRANLIAMQQQLLEAVKAIPETAAYRQSVEATATYRLKVATEETDEEAIEKTIGFG---QLEELIEQGK 99          
BLAST of mRNA_P-wetherbeei_contig5675.1.1 vs. uniprot
Match: A0A024GNY3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GNY3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.010e-19
Identity = 47/86 (54.65%), Postives = 65/86 (75.58%), Query Frame = 1
Query:   31 RKTATGLTGLAVDPNARANLIKVQQQVLEKIKI--IPAGVAYRDAVEKTFSYRLKVAQDAEDEDKIEEEIGMGAPIQLEELIDEAK 282
            RKT+TGL GLAV+PNAR +L+ + Q+ LE++KI  +P   AYRDAVE+   +RLK+ +D E+ED IE+EI  G   QLEELI++A+
Sbjct:   12 RKTSTGLVGLAVNPNARQDLVHLYQRTLEEVKIQVLPEDAAYRDAVERITKFRLKIVEDNENEDVIEKEINCG---QLEELIEQAE 94          
BLAST of mRNA_P-wetherbeei_contig5675.1.1 vs. uniprot
Match: F0WM77_9STRA (Uncharacterized protein AlNc14C153G7580 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WM77_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.720e-18
Identity = 49/97 (50.52%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    1 MFAARVLLRA-RKTATGLTGLAVDPNARANLIKVQQQVLEKIK--IIPAGVAYRDAVEKTFSYRLKVAQDAEDEDKIEEEIGMGAPIQLEELIDEAK 282
            M+  R L  A RKT+TGL GLAV+PNAR +L+++ ++ LE++K  ++P   AYRDAVE+   +RLKV ++ EDE+ IE+EI  G   QLEELI++A+
Sbjct:    1 MWVTRALCAAVRKTSTGLVGLAVNPNARKDLMQLYRKTLEEVKNQVLPEDAAYRDAVERITKFRLKVVEENEDEEVIEKEINCG---QLEELIEQAE 94          
BLAST of mRNA_P-wetherbeei_contig5675.1.1 vs. uniprot
Match: A0A835Z296_9STRA (NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z296_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.030e-16
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   31 RKTATGLTGLAVDPNARANLIKVQQQVLEKIKIIPAGVAYRDAVEKTFSYRLKVAQDAEDEDKIEEEIGMGAPIQLEELIDEA 279
            +KT+TGL GL VDPNAR NL + Q  +LEKIKIIP    YR AVE    YRLKV   +  ++++E+EI  G   QLEELI +A
Sbjct:   23 KKTSTGLVGLPVDPNARVNLAQKQNDILEKIKIIPEHTGYRKAVEAISKYRLKVLDSSLTDEQVEDEINCG---QLEELIVQA 102          
BLAST of mRNA_P-wetherbeei_contig5675.1.1 vs. uniprot
Match: A0A261XUS0_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XUS0_9FUNG)

HSP 1 Score: 71.6 bits (174), Expect = 3.090e-14
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 1
Query:    1 MFAARVLLRARKTATGLTGLAVDPNARANLIKVQQQVLEKIKIIPAGVAYRDAVEKTFSYRLKVAQDAEDEDKIEEEIGMGAPIQLEELIDEAK 282
            M   R+L  ARKT TGLTG+AV  + R  LIKV  Q L ++  +PA   YR A E    +RL++ +  +D ++IE++IG G   Q+EELI +A+
Sbjct:    1 MLPTRLLFAARKTTTGLTGIAVHNSPRPTLIKVYNQTLSRLSALPASAVYRQAAEALTKHRLEIVESTKDVNEIEKKIGAG---QVEELIWQAE 91          
BLAST of mRNA_P-wetherbeei_contig5675.1.1 vs. uniprot
Match: A0A072UKP4_MEDTR (NADH-ubiquinone oxidoreductase, putative n=2 Tax=Medicago truncatula TaxID=3880 RepID=A0A072UKP4_MEDTR)

HSP 1 Score: 73.6 bits (179), Expect = 1.220e-13
Identity = 45/91 (49.45%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   10 ARVLLRARKTATGLTGLAVDPNARANLIKVQQQVLEKIKIIPAGVAYRDAVEKTFSYRLKVAQDAEDEDKIEEEIGMGAPIQLEELIDEAK 282
            AR L+   KT TG+ GL V PNAR  LI +  + L +IK +P    YR AVE   S+RLKV Q+ ED +KIE  +G G   Q+EELI+EA+
Sbjct:   93 ARPLMARLKTTTGIVGLDVVPNAREVLINLYSKTLNEIKKVPEDEGYRKAVESFTSHRLKVCQEEEDWEKIENRLGCG---QVEELIEEAQ 180          
BLAST of mRNA_P-wetherbeei_contig5675.1.1 vs. uniprot
Match: A0A1Y1I1B4_KLENI (NADH-ubiquinone oxidoreductase 1 alpha subcomplex subunit 5 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I1B4_KLENI)

HSP 1 Score: 68.2 bits (165), Expect = 1.510e-12
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   19 LLRARKTATGLTGLAVDPNARANLIKVQQQVLEKIKI-IPAGVAYRDAVEKTFSYRLKVAQDAEDEDKIEEEIGMGAPIQLEELIDEA 279
            LL A K +TG+ GL V PNAR  LI +  Q L+ +K  IP    YR +VE+  +YRLKV Q+ E+ D+IE+ IG G   Q+EELI++A
Sbjct:   10 LLSAAKESTGIVGLDVVPNAREVLIGLYDQTLKVVKDQIPEQAEYRRSVERITNYRLKVCQEEEEHDRIEQRIGCG---QVEELIEQA 94          
BLAST of mRNA_P-wetherbeei_contig5675.1.1 vs. uniprot
Match: A0A835IHB9_9MAGN (Uncharacterized protein n=2 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IHB9_9MAGN)

HSP 1 Score: 68.2 bits (165), Expect = 2.910e-12
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   19 LLRARKTATGLTGLAVDPNARANLIKVQQQVLEKIKIIPAGVAYRDAVEKTFSYRLKVAQDAEDEDKIEEEIGMGAPIQLEELIDEAK 282
            LL   K  TG+ GL V PNAR  LI +  + L +IK +P    YR AVE    +RLKV Q+ ED ++IE ++G G   Q+EE+++EAK
Sbjct:   12 LLARVKETTGIVGLDVVPNAREQLISLYSKTLNEIKSVPEDEGYRKAVESFTKHRLKVCQEEEDWEQIENKLGCG---QIEEVLEEAK 96          
BLAST of mRNA_P-wetherbeei_contig5675.1.1 vs. uniprot
Match: A0A2K3NDE8_TRIPR (Putative NADH dehydrogenase n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3NDE8_TRIPR)

HSP 1 Score: 67.0 bits (162), Expect = 1.090e-11
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   10 ARVLLRARKTATGLTGLAVDPNARANLIKVQQQVLEKIKIIPAGVAYRDAVEKTFSYRLKVAQDAEDEDKIEEEIGMGAPIQLEELIDEAK 282
            AR L+   K  TG+ GL V PNAR  LI +  + L +I+ +P    YR AVE   S+RLKV Q+ ED +KIE+ +  G   Q+EELI+EA+
Sbjct:    7 ARPLMAKIKQTTGIVGLDVVPNAREVLIGLYSKTLNEIQKVPKDEGYRKAVESFTSHRLKVCQEEEDWEKIEDRLACG---QVEELIEEAQ 94          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5675.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FTF5_ECTSI9.210e-2058.33NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus... [more]
A0A7S2BEJ1_9STRA1.240e-1959.04Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A024GNY3_9STRA3.010e-1954.65Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0WM77_9STRA1.720e-1850.52Uncharacterized protein AlNc14C153G7580 n=1 Tax=Al... [more]
A0A835Z296_9STRA1.030e-1654.22NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A261XUS0_9FUNG3.090e-1443.62Uncharacterized protein (Fragment) n=1 Tax=Bifigur... [more]
A0A072UKP4_MEDTR1.220e-1349.45NADH-ubiquinone oxidoreductase, putative n=2 Tax=M... [more]
A0A1Y1I1B4_KLENI1.510e-1248.86NADH-ubiquinone oxidoreductase 1 alpha subcomplex ... [more]
A0A835IHB9_9MAGN2.910e-1245.45Uncharacterized protein n=2 Tax=Coptis chinensis T... [more]
A0A2K3NDE8_TRIPR1.090e-1146.15Putative NADH dehydrogenase n=2 Tax=Trifolium prat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5675contigP-wetherbeei_contig5675:15..885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog65071.PYU1_T008033
PFAMsETC_C1_NDUFA5
Model size282
Max annot lvl121069|Pythiales
Hectar predicted targeting categorymitochondrion
Exons3
Evalue1.17e-22
EggNOG OGsKOG3365@1|root,KOG3365@2759|Eukaryota,1MHEE@121069|Pythiales
Ec32 ortholog descriptionNADH dehydrogenase (ubiquinone)
Ec32 orthologEc-21_001150.1
DescriptionNADH dehydrogenase. Source PGD
Cds size282
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186842.7814133-CDS-P-wetherbeei_contig5675:14..861683186842.7814133-CDS-P-wetherbeei_contig5675:14..86Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5675 15..86 -
1683186842.7955666-CDS-P-wetherbeei_contig5675:357..4411683186842.7955666-CDS-P-wetherbeei_contig5675:357..441Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5675 358..441 -
1683186842.807735-CDS-P-wetherbeei_contig5675:759..8851683186842.807735-CDS-P-wetherbeei_contig5675:759..885Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5675 760..885 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5675.1.1prot_P-wetherbeei_contig5675.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5675 15..885 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5675.1.1

>prot_P-wetherbeei_contig5675.1.1 ID=prot_P-wetherbeei_contig5675.1.1|Name=mRNA_P-wetherbeei_contig5675.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
MFAARVLLRARKTATGLTGLAVDPNARANLIKVQQQVLEKIKIIPAGVAY
RDAVEKTFSYRLKVAQDAEDEDKIEEEIGMGAPIQLEELIDEAK
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mRNA from alignment at P-wetherbeei_contig5675:15..885-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5675.1.1 ID=mRNA_P-wetherbeei_contig5675.1.1|Name=mRNA_P-wetherbeei_contig5675.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=871bp|location=Sequence derived from alignment at P-wetherbeei_contig5675:15..885- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTGCGGCCCGCGTGTTGTTAAGGGCGCGGAAGACGGCAACGGGGTT GACGGGACTCGCCGTCGACCCAAACGCGAGGGCGAACCTCATTAAGGTGC AACAACAAGTGTTAGAGAAGATCAAGGTAGGAAAGATCTCGTGTGACTGG CGTCCCAGAAATCCTGATTCAAACGTCTGTGGAGAGATCGGCATGCTTTT CTTTCGTTGCAGCTGCTTTGCTCGACACAGAAAGCAGACGGGGCTGCATG AGTTGCATCGGAATTAGTCCCCTCCGCCTCGTTCCGTCGGCTTTCCTTCA ACATCTTTAGGCACAGCTCGGCCCCGCCACCTACGTTCCTTAGCAACCCT CTTCCCCGCGCTCCTGCCTTTTCTAACCCCCTTCGTTCCTATTCCTACAT GGCCACCTATCCCTCCTAAAACGGCTCTTGCCCATGCCCAATAGATAATC CCAGCAGGAGTGGCGTACAGAGATGCTGTAGAGAAGACATTCTCTTACCG GTTAAAAGTTGCACAAGATGCGGAAGATGTAAGTTCCAAATATTATGCCT GGCTCCGTAAATCGGCGAGAAAACGTATGTGACCCCACTCCTTCGGTTCC AATCGGTCGCGAAAAGTTTGAAGAACGGAGGAATCAAAGCAAAGCAACGG GCCCTTCCGTTCTTATGTCAAATTTCACTTTCTCCGCTTGCTCACTGATT GGTGTCGACGATGCGGCGGCGGCTGCGACGACAACACGATGGTGGCGGTG GTTCCTGCGGCGACGGAAATGACGATGGCTCATGTCTGCGCTTATACAGG AGGACAAGATTGAGGAGGAGATTGGAATGGGAGCGCCAATTCAACTCGAG GAGCTCATTGACGAGGCAAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5675:15..885-

>mRNA_P-wetherbeei_contig5675.1.1 ID=mRNA_P-wetherbeei_contig5675.1.1|Name=mRNA_P-wetherbeei_contig5675.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig5675:15..885- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTGCGGCCCGCGTGTTGTTAAGGGCGCGGAAGACGGCAACGGGGTT
GACGGGACTCGCCGTCGACCCAAACGCGAGGGCGAACCTCATTAAGGTGC
AACAACAAGTGTTAGAGAAGATCAAGATAATCCCAGCAGGAGTGGCGTAC
AGAGATGCTGTAGAGAAGACATTCTCTTACCGGTTAAAAGTTGCACAAGA
TGCGGAAGATGAGGACAAGATTGAGGAGGAGATTGGAATGGGAGCGCCAA
TTCAACTCGAGGAGCTCATTGACGAGGCAAAG
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