mRNA_P-wetherbeei_contig56650.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56650.1.1
Unique NamemRNA_P-wetherbeei_contig56650.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: A0A1H6I4L8_9BRAD (Tripartite-type tricarboxylate transporter, receptor component TctC n=8 Tax=Tardiphaga TaxID=1395974 RepID=A0A1H6I4L8_9BRAD)

HSP 1 Score: 279 bits (714), Expect = 6.400e-92
Identity = 140/158 (88.61%), Postives = 145/158 (91.77%), Query Frame = 1
Query:   28 MRGTTHLPNRRQFVTTSLGAAAWLGAPSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARKT 501
            MR    L NRRQFVT   GAAA L APSLVRA++WPTKPIK+LAGSAAGGQTDQF+RVYGEYL RELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWV VMPGGSL LMVSEK+GAKTLKDFIDYARKT
Sbjct:    1 MRNNLRLLNRRQFVTVGAGAAALLSAPSLVRANSWPTKPIKILAGSAAGGQTDQFSRVYGEYLSRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVAVMPGGSLPLMVSEKVGAKTLKDFIDYARKT 158          
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: UPI001BA49075 (tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Rhodopseudomonas sp. SK50-23 TaxID=340268 RepID=UPI001BA49075)

HSP 1 Score: 271 bits (694), Expect = 6.700e-89
Identity = 134/152 (88.16%), Postives = 144/152 (94.74%), Query Frame = 1
Query:   46 LPNRRQFVTTSLGAAAWLGAPSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARKT 501
            L NRRQFVT   GAAA L APS++RA++WPTKPIK+LAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAA+ELKR+DPDGHTLMICNTTAYMLNPVLIKDIKY+VPQDFAWVTVMPGGSL L+VSEK GAKTLKDFIDYA+KT
Sbjct:    7 LLNRRQFVTAGAGAAALLSAPSILRANSWPTKPIKILAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAALELKRADPDGHTLMICNTTAYMLNPVLIKDIKYNVPQDFAWVTVMPGGSLPLVVSEKTGAKTLKDFIDYAKKT 158          
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: A0A257KPG9_9BRAD (Uncharacterized protein n=2 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A257KPG9_9BRAD)

HSP 1 Score: 268 bits (684), Expect = 3.620e-87
Identity = 132/167 (79.04%), Postives = 146/167 (87.43%), Query Frame = 1
Query:    1 DKAKTGRLKMRGTTHLPNRRQFVTTSLGAAAWLGAPSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARKT 501
            D+   GR+ +R    L +RRQFV    GA A L APSLVRAS+WPTKPIK+LAGSA GGQTDQFAR+YGEYLQRELGQT+VVENKAGAGGAVAA+ELKR+DPDGHTLMICNTTAYMLNPVLIKDIKY+VPQDF WV VMPGGSL L+V EK+GAKTLKDFIDYA+KT
Sbjct:    7 DRITIGRMIVRNKLRLLSRRQFVAAGAGATALLSAPSLVRASSWPTKPIKILAGSAPGGQTDQFARLYGEYLQRELGQTIVVENKAGAGGAVAALELKRADPDGHTLMICNTTAYMLNPVLIKDIKYNVPQDFTWVAVMPGGSLPLVVGEKVGAKTLKDFIDYAKKT 173          
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: A0A4V1ZPH6_9BRAD (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A4V1ZPH6_9BRAD)

HSP 1 Score: 268 bits (684), Expect = 6.480e-87
Identity = 131/162 (80.86%), Postives = 144/162 (88.89%), Query Frame = 1
Query:   16 GRLKMRGTTHLPNRRQFVTTSLGAAAWLGAPSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARKT 501
            GR  +R   HL NRRQ      GAAA + APSL+RA++WPTKPIK+LAGSAAGGQTDQF+RVYGEYLQRELGQTVV+ENKAGAGGAVAA+ELKRSDPDGHTLMICNTTAYMLNPVLIKD+KY+VPQDF WV VMPGGSL L+VSEKIGAKTL DFIDYA+KT
Sbjct:   31 GRTIVRNNLHLLNRRQLFAAGAGAAAMVSAPSLLRANSWPTKPIKILAGSAAGGQTDQFSRVYGEYLQRELGQTVVIENKAGAGGAVAALELKRSDPDGHTLMICNTTAYMLNPVLIKDVKYNVPQDFTWVAVMPGGSLPLVVSEKIGAKTLADFIDYAKKT 192          
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: A0A515KIW7_9BRAD (Tripartite tricarboxylate transporter substrate binding protein n=2 Tax=Tardiphaga TaxID=1395974 RepID=A0A515KIW7_9BRAD)

HSP 1 Score: 257 bits (657), Expect = 3.580e-83
Identity = 128/162 (79.01%), Postives = 143/162 (88.27%), Query Frame = 1
Query:   16 GRLKMRGTTHLPNRRQFVTTSLGAAAWLGAPSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARKT 501
            G   MR  + L NRRQ +    GAAA L APSL+RASTWPTKPI+MLAGSAAGGQTDQFARVYGEYL RELGQTVVVENKAGAGGAVAAMELKR++PDGHTLMICNTTAYMLNPV+IKDIKY+V +DFAWV+VMPGGSL L+V+EK+GAKTL +FI YAR+T
Sbjct:    6 GMTTMRNRSLLLNRRQLIGAGAGAAALLSAPSLLRASTWPTKPIRMLAGSAAGGQTDQFARVYGEYLSRELGQTVVVENKAGAGGAVAAMELKRAEPDGHTLMICNTTAYMLNPVVIKDIKYNVAEDFAWVSVMPGGSLPLVVNEKVGAKTLAEFIAYARRT 167          
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: UPI0019C4EDD5 (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Tardiphaga sp. TaxID=1926292 RepID=UPI0019C4EDD5)

HSP 1 Score: 248 bits (632), Expect = 1.710e-79
Identity = 119/151 (78.81%), Postives = 135/151 (89.40%), Query Frame = 1
Query:   46 LPNRRQFVTTSLGAAAWLGAPSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARK 498
            L +RRQ +T   G AAWL APSLV+A TWPT+PI++LAGSAAGGQTDQFARVYGEYL R+LGQTVVVENKAGAGGA+ A ELKRS+PDGHTLMICNTTAYMLNPVLIKDI+Y+V +DFAW+TVMPGGSL  +VSEK+GAKTL +FI YARK
Sbjct:    7 LLDRRQLMTAGAGIAAWLSAPSLVKADTWPTRPIRILAGSAAGGQTDQFARVYGEYLSRQLGQTVVVENKAGAGGALPAAELKRSEPDGHTLMICNTTAYMLNPVLIKDIQYNVAEDFAWITVMPGGSLPFLVSEKVGAKTLPEFIAYARK 157          
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: A0A257KU30_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium PARB1 TaxID=2015576 RepID=A0A257KU30_9BRAD)

HSP 1 Score: 212 bits (540), Expect = 7.210e-65
Identity = 107/164 (65.24%), Postives = 133/164 (81.10%), Query Frame = 1
Query:   10 KTGRLKMRGTTHLPNRRQFVTTSLGAAAWLGAPSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARKT 501
            K GR+ M+ TT L  RR+ +T   GAAA L APS  RA+TWP+KPI++LAG AAGGQTDQF+R YG+Y+ RE GQTVVVENK GAGGA+AA+ELKRS PDGHTLMI NTT +MLNPVL+KDI+Y   +DFA +++MP GS+ L VSEK+ AKTL +FI+YA+K+
Sbjct:   56 KIGRMTMK-TTALLTRRRLMTAGAGAAALLCAPSFGRANTWPSKPIRILAGFAAGGQTDQFSRAYGDYISRETGQTVVVENKTGAGGALAAVELKRSAPDGHTLMITNTTTFMLNPVLMKDIRYDPLKDFAMISMMPSGSVPLFVSEKVPAKTLPEFIEYAKKS 218          
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: UPI001BF0B49F (Tripartite tricarboxylate transporter substrate binding protein n=2 Tax=Rhodopseudomonas sp. SK50-23 TaxID=340268 RepID=UPI001BF0B49F)

HSP 1 Score: 201 bits (511), Expect = 1.130e-60
Identity = 97/137 (70.80%), Postives = 119/137 (86.86%), Query Frame = 1
Query:   91 AWLGAPSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARKT 501
            A L APSLVRA++WPTKPI++LAG AAGGQTDQF+R YG+Y+ RE+GQTVVVENK GAGGA+AA+ELKRS PDGHTLMI NTT +MLNPVL+KDI+Y   +DFA +++MP GS+ L VSEK+ AKTL +FIDYA+K+
Sbjct:   68 ALLCAPSLVRANSWPTKPIRILAGFAAGGQTDQFSRAYGDYISREVGQTVVVENKTGAGGALAAVELKRSAPDGHTLMITNTTTFMLNPVLMKDIRYDPLKDFAMISMMPSGSVPLFVSEKVPAKTLAEFIDYAKKS 204          
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: A0A1W9IHP2_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium SG_bin9 TaxID=1827385 RepID=A0A1W9IHP2_9PROT)

HSP 1 Score: 195 bits (495), Expect = 4.170e-59
Identity = 92/131 (70.23%), Postives = 112/131 (85.50%), Query Frame = 1
Query:  106 PSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARK 498
            PS+VRA  WP+KPIK++ G AAGGQTDQF+RVYGEY+ RELGQ VVVENK GA GA+AAME+KRSDPDG+TLM+ NT  YMLNP+L KD+KYS+ +DF +V++MP G L L++SEKIGAKTL +FI YARK
Sbjct:    2 PSIVRAQAWPSKPIKIVCGFAAGGQTDQFSRVYGEYIARELGQPVVVENKTGASGAIAAMEVKRSDPDGYTLMMSNTGTYMLNPLLQKDVKYSIAEDFVFVSMMPTGGLPLLISEKIGAKTLAEFIAYARK 132          
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: UPI001BA84EBB (tripartite tricarboxylate transporter substrate binding protein n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BA84EBB)

HSP 1 Score: 182 bits (461), Expect = 1.060e-53
Identity = 92/149 (61.74%), Postives = 109/149 (73.15%), Query Frame = 1
Query:   55 RRQFVTTSLGAAAWLGAPSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARKT 501
            RRQ +      AA   A      + WP KPIKML G AAGGQTD FAR YG+Y+ R++GQTVVVENK G GGAV+A+ELKRS PDG+T MI NTT YM NPV +KDI+Y V +DF  V++MP GSL L+VSEK GAK L++FI YARKT
Sbjct:    9 RRQLMAAGAATAAVASAGPGFANTAWPAKPIKMLVGFAAGGQTDLFARTYGDYISRQVGQTVVVENKVGGGGAVSAVELKRSAPDGYTAMINNTTTYMTNPVTMKDIRYDVGKDFVVVSIMPTGSLPLIVSEKCGAKNLEEFIAYARKT 157          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1H6I4L8_9BRAD6.400e-9288.61Tripartite-type tricarboxylate transporter, recept... [more]
UPI001BA490756.700e-8988.16tripartite tricarboxylate transporter substrate bi... [more]
A0A257KPG9_9BRAD3.620e-8779.04Uncharacterized protein n=2 Tax=Bradyrhizobiaceae ... [more]
A0A4V1ZPH6_9BRAD6.480e-8780.86Tripartite tricarboxylate transporter substrate bi... [more]
A0A515KIW7_9BRAD3.580e-8379.01Tripartite tricarboxylate transporter substrate bi... [more]
UPI0019C4EDD51.710e-7978.81Tripartite tricarboxylate transporter substrate bi... [more]
A0A257KU30_9BRAD7.210e-6565.24Uncharacterized protein n=1 Tax=Bradyrhizobiaceae ... [more]
UPI001BF0B49F1.130e-6070.80Tripartite tricarboxylate transporter substrate bi... [more]
A0A1W9IHP2_9PROT4.170e-5970.23Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
UPI001BA84EBB1.060e-5361.74tripartite tricarboxylate transporter substrate bi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56650contigP-wetherbeei_contig56650:16..516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1429916.X566_06640
PFAMsTctC
Model size501
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.7e-51
EggNOG OGsCOG3181@1|root,COG3181@2|Bacteria,1QU33@1224|Proteobacteria,2U0M1@28211|Alphaproteobacteria,3JUKH@41294|Bradyrhizobiaceae
DescriptionTripartite tricarboxylate transporter family receptor
Cds size474
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186841.651985-UTR-P-wetherbeei_contig56650:15..421683186841.651985-UTR-P-wetherbeei_contig56650:15..42Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig56650 16..42 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186841.661888-CDS-P-wetherbeei_contig56650:42..5161683186841.661888-CDS-P-wetherbeei_contig56650:42..516Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56650 43..516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56650.1.1prot_P-wetherbeei_contig56650.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56650 43..516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56650.1.1

>prot_P-wetherbeei_contig56650.1.1 ID=prot_P-wetherbeei_contig56650.1.1|Name=mRNA_P-wetherbeei_contig56650.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp
MRGTTHLPNRRQFVTTSLGAAAWLGAPSLVRASTWPTKPIKMLAGSAAGG
QTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMI
CNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKD
FIDYARKT
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mRNA from alignment at P-wetherbeei_contig56650:16..516+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56650.1.1 ID=mRNA_P-wetherbeei_contig56650.1.1|Name=mRNA_P-wetherbeei_contig56650.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig56650:16..516+ (Phaeothamnion wetherbeei SAG_119_79)
GACAAGGCCAAGACCGGGAGGTTAAAAATGCGCGGCACCACGCACTTGCC CAACCGCCGCCAATTCGTCACCACGAGTCTCGGCGCCGCTGCATGGCTCG GCGCGCCGTCGCTCGTCCGCGCGAGCACGTGGCCAACCAAGCCGATCAAG ATGCTTGCCGGCTCCGCGGCTGGCGGCCAGACCGATCAGTTCGCACGCGT CTATGGCGAATATCTCCAGCGCGAACTCGGGCAGACCGTGGTGGTCGAGA ACAAGGCCGGTGCCGGCGGCGCGGTGGCGGCGATGGAACTGAAGCGCTCC GATCCTGACGGCCACACGCTGATGATCTGCAACACCACGGCCTATATGCT CAACCCGGTCCTCATCAAGGACATCAAGTACAGTGTCCCGCAGGACTTCG CCTGGGTGACGGTGATGCCGGGCGGAAGCCTGTCGCTGATGGTGAGCGAA AAGATCGGCGCGAAGACGCTGAAGGACTTCATCGACTATGCGCGCAAGAC C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56650:16..516+

>mRNA_P-wetherbeei_contig56650.1.1 ID=mRNA_P-wetherbeei_contig56650.1.1|Name=mRNA_P-wetherbeei_contig56650.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig56650:16..516+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGGCACCACGCACTTGCCCAACCGCCGCCAATTCGTCACCACGAG
TCTCGGCGCCGCTGCATGGCTCGGCGCGCCGTCGCTCGTCCGCGCGAGCA
CGTGGCCAACCAAGCCGATCAAGATGCTTGCCGGCTCCGCGGCTGGCGGC
CAGACCGATCAGTTCGCACGCGTCTATGGCGAATATCTCCAGCGCGAACT
CGGGCAGACCGTGGTGGTCGAGAACAAGGCCGGTGCCGGCGGCGCGGTGG
CGGCGATGGAACTGAAGCGCTCCGATCCTGACGGCCACACGCTGATGATC
TGCAACACCACGGCCTATATGCTCAACCCGGTCCTCATCAAGGACATCAA
GTACAGTGTCCCGCAGGACTTCGCCTGGGTGACGGTGATGCCGGGCGGAA
GCCTGTCGCTGATGGTGAGCGAAAAGATCGGCGCGAAGACGCTGAAGGAC
TTCATCGACTATGCGCGCAAGACC
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