mRNA_P-wetherbeei_contig56650.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: A0A1H6I4L8_9BRAD (Tripartite-type tricarboxylate transporter, receptor component TctC n=8 Tax=Tardiphaga TaxID=1395974 RepID=A0A1H6I4L8_9BRAD) HSP 1 Score: 279 bits (714), Expect = 6.400e-92 Identity = 140/158 (88.61%), Postives = 145/158 (91.77%), Query Frame = 1
Query: 28 MRGTTHLPNRRQFVTTSLGAAAWLGAPSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARKT 501
MR L NRRQFVT GAAA L APSLVRA++WPTKPIK+LAGSAAGGQTDQF+RVYGEYL RELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWV VMPGGSL LMVSEK+GAKTLKDFIDYARKT
Sbjct: 1 MRNNLRLLNRRQFVTVGAGAAALLSAPSLVRANSWPTKPIKILAGSAAGGQTDQFSRVYGEYLSRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVAVMPGGSLPLMVSEKVGAKTLKDFIDYARKT 158
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: UPI001BA49075 (tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Rhodopseudomonas sp. SK50-23 TaxID=340268 RepID=UPI001BA49075) HSP 1 Score: 271 bits (694), Expect = 6.700e-89 Identity = 134/152 (88.16%), Postives = 144/152 (94.74%), Query Frame = 1
Query: 46 LPNRRQFVTTSLGAAAWLGAPSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARKT 501
L NRRQFVT GAAA L APS++RA++WPTKPIK+LAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAA+ELKR+DPDGHTLMICNTTAYMLNPVLIKDIKY+VPQDFAWVTVMPGGSL L+VSEK GAKTLKDFIDYA+KT
Sbjct: 7 LLNRRQFVTAGAGAAALLSAPSILRANSWPTKPIKILAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAALELKRADPDGHTLMICNTTAYMLNPVLIKDIKYNVPQDFAWVTVMPGGSLPLVVSEKTGAKTLKDFIDYAKKT 158
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: A0A257KPG9_9BRAD (Uncharacterized protein n=2 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A257KPG9_9BRAD) HSP 1 Score: 268 bits (684), Expect = 3.620e-87 Identity = 132/167 (79.04%), Postives = 146/167 (87.43%), Query Frame = 1
Query: 1 DKAKTGRLKMRGTTHLPNRRQFVTTSLGAAAWLGAPSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARKT 501
D+ GR+ +R L +RRQFV GA A L APSLVRAS+WPTKPIK+LAGSA GGQTDQFAR+YGEYLQRELGQT+VVENKAGAGGAVAA+ELKR+DPDGHTLMICNTTAYMLNPVLIKDIKY+VPQDF WV VMPGGSL L+V EK+GAKTLKDFIDYA+KT
Sbjct: 7 DRITIGRMIVRNKLRLLSRRQFVAAGAGATALLSAPSLVRASSWPTKPIKILAGSAPGGQTDQFARLYGEYLQRELGQTIVVENKAGAGGAVAALELKRADPDGHTLMICNTTAYMLNPVLIKDIKYNVPQDFTWVAVMPGGSLPLVVGEKVGAKTLKDFIDYAKKT 173
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: A0A4V1ZPH6_9BRAD (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A4V1ZPH6_9BRAD) HSP 1 Score: 268 bits (684), Expect = 6.480e-87 Identity = 131/162 (80.86%), Postives = 144/162 (88.89%), Query Frame = 1
Query: 16 GRLKMRGTTHLPNRRQFVTTSLGAAAWLGAPSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARKT 501
GR +R HL NRRQ GAAA + APSL+RA++WPTKPIK+LAGSAAGGQTDQF+RVYGEYLQRELGQTVV+ENKAGAGGAVAA+ELKRSDPDGHTLMICNTTAYMLNPVLIKD+KY+VPQDF WV VMPGGSL L+VSEKIGAKTL DFIDYA+KT
Sbjct: 31 GRTIVRNNLHLLNRRQLFAAGAGAAAMVSAPSLLRANSWPTKPIKILAGSAAGGQTDQFSRVYGEYLQRELGQTVVIENKAGAGGAVAALELKRSDPDGHTLMICNTTAYMLNPVLIKDVKYNVPQDFTWVAVMPGGSLPLVVSEKIGAKTLADFIDYAKKT 192
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: A0A515KIW7_9BRAD (Tripartite tricarboxylate transporter substrate binding protein n=2 Tax=Tardiphaga TaxID=1395974 RepID=A0A515KIW7_9BRAD) HSP 1 Score: 257 bits (657), Expect = 3.580e-83 Identity = 128/162 (79.01%), Postives = 143/162 (88.27%), Query Frame = 1
Query: 16 GRLKMRGTTHLPNRRQFVTTSLGAAAWLGAPSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARKT 501
G MR + L NRRQ + GAAA L APSL+RASTWPTKPI+MLAGSAAGGQTDQFARVYGEYL RELGQTVVVENKAGAGGAVAAMELKR++PDGHTLMICNTTAYMLNPV+IKDIKY+V +DFAWV+VMPGGSL L+V+EK+GAKTL +FI YAR+T
Sbjct: 6 GMTTMRNRSLLLNRRQLIGAGAGAAALLSAPSLLRASTWPTKPIRMLAGSAAGGQTDQFARVYGEYLSRELGQTVVVENKAGAGGAVAAMELKRAEPDGHTLMICNTTAYMLNPVVIKDIKYNVAEDFAWVSVMPGGSLPLVVNEKVGAKTLAEFIAYARRT 167
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: UPI0019C4EDD5 (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Tardiphaga sp. TaxID=1926292 RepID=UPI0019C4EDD5) HSP 1 Score: 248 bits (632), Expect = 1.710e-79 Identity = 119/151 (78.81%), Postives = 135/151 (89.40%), Query Frame = 1
Query: 46 LPNRRQFVTTSLGAAAWLGAPSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARK 498
L +RRQ +T G AAWL APSLV+A TWPT+PI++LAGSAAGGQTDQFARVYGEYL R+LGQTVVVENKAGAGGA+ A ELKRS+PDGHTLMICNTTAYMLNPVLIKDI+Y+V +DFAW+TVMPGGSL +VSEK+GAKTL +FI YARK
Sbjct: 7 LLDRRQLMTAGAGIAAWLSAPSLVKADTWPTRPIRILAGSAAGGQTDQFARVYGEYLSRQLGQTVVVENKAGAGGALPAAELKRSEPDGHTLMICNTTAYMLNPVLIKDIQYNVAEDFAWITVMPGGSLPFLVSEKVGAKTLPEFIAYARK 157
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: A0A257KU30_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium PARB1 TaxID=2015576 RepID=A0A257KU30_9BRAD) HSP 1 Score: 212 bits (540), Expect = 7.210e-65 Identity = 107/164 (65.24%), Postives = 133/164 (81.10%), Query Frame = 1
Query: 10 KTGRLKMRGTTHLPNRRQFVTTSLGAAAWLGAPSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARKT 501
K GR+ M+ TT L RR+ +T GAAA L APS RA+TWP+KPI++LAG AAGGQTDQF+R YG+Y+ RE GQTVVVENK GAGGA+AA+ELKRS PDGHTLMI NTT +MLNPVL+KDI+Y +DFA +++MP GS+ L VSEK+ AKTL +FI+YA+K+
Sbjct: 56 KIGRMTMK-TTALLTRRRLMTAGAGAAALLCAPSFGRANTWPSKPIRILAGFAAGGQTDQFSRAYGDYISRETGQTVVVENKTGAGGALAAVELKRSAPDGHTLMITNTTTFMLNPVLMKDIRYDPLKDFAMISMMPSGSVPLFVSEKVPAKTLPEFIEYAKKS 218
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: UPI001BF0B49F (Tripartite tricarboxylate transporter substrate binding protein n=2 Tax=Rhodopseudomonas sp. SK50-23 TaxID=340268 RepID=UPI001BF0B49F) HSP 1 Score: 201 bits (511), Expect = 1.130e-60 Identity = 97/137 (70.80%), Postives = 119/137 (86.86%), Query Frame = 1
Query: 91 AWLGAPSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARKT 501
A L APSLVRA++WPTKPI++LAG AAGGQTDQF+R YG+Y+ RE+GQTVVVENK GAGGA+AA+ELKRS PDGHTLMI NTT +MLNPVL+KDI+Y +DFA +++MP GS+ L VSEK+ AKTL +FIDYA+K+
Sbjct: 68 ALLCAPSLVRANSWPTKPIRILAGFAAGGQTDQFSRAYGDYISREVGQTVVVENKTGAGGALAAVELKRSAPDGHTLMITNTTTFMLNPVLMKDIRYDPLKDFAMISMMPSGSVPLFVSEKVPAKTLAEFIDYAKKS 204
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: A0A1W9IHP2_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium SG_bin9 TaxID=1827385 RepID=A0A1W9IHP2_9PROT) HSP 1 Score: 195 bits (495), Expect = 4.170e-59 Identity = 92/131 (70.23%), Postives = 112/131 (85.50%), Query Frame = 1
Query: 106 PSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARK 498
PS+VRA WP+KPIK++ G AAGGQTDQF+RVYGEY+ RELGQ VVVENK GA GA+AAME+KRSDPDG+TLM+ NT YMLNP+L KD+KYS+ +DF +V++MP G L L++SEKIGAKTL +FI YARK
Sbjct: 2 PSIVRAQAWPSKPIKIVCGFAAGGQTDQFSRVYGEYIARELGQPVVVENKTGASGAIAAMEVKRSDPDGYTLMMSNTGTYMLNPLLQKDVKYSIAEDFVFVSMMPTGGLPLLISEKIGAKTLAEFIAYARK 132
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Match: UPI001BA84EBB (tripartite tricarboxylate transporter substrate binding protein n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BA84EBB) HSP 1 Score: 182 bits (461), Expect = 1.060e-53 Identity = 92/149 (61.74%), Postives = 109/149 (73.15%), Query Frame = 1
Query: 55 RRQFVTTSLGAAAWLGAPSLVRASTWPTKPIKMLAGSAAGGQTDQFARVYGEYLQRELGQTVVVENKAGAGGAVAAMELKRSDPDGHTLMICNTTAYMLNPVLIKDIKYSVPQDFAWVTVMPGGSLSLMVSEKIGAKTLKDFIDYARKT 501
RRQ + AA A + WP KPIKML G AAGGQTD FAR YG+Y+ R++GQTVVVENK G GGAV+A+ELKRS PDG+T MI NTT YM NPV +KDI+Y V +DF V++MP GSL L+VSEK GAK L++FI YARKT
Sbjct: 9 RRQLMAAGAATAAVASAGPGFANTAWPAKPIKMLVGFAAGGQTDLFARTYGDYISRQVGQTVVVENKVGGGGAVSAVELKRSAPDGYTAMINNTTTYMTNPVTMKDIRYDVGKDFVVVSIMPTGSLPLIVSEKCGAKNLEEFIAYARKT 157 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56650.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig56650.1.1 >prot_P-wetherbeei_contig56650.1.1 ID=prot_P-wetherbeei_contig56650.1.1|Name=mRNA_P-wetherbeei_contig56650.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp MRGTTHLPNRRQFVTTSLGAAAWLGAPSLVRASTWPTKPIKMLAGSAAGGback to top mRNA from alignment at P-wetherbeei_contig56650:16..516+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig56650.1.1 ID=mRNA_P-wetherbeei_contig56650.1.1|Name=mRNA_P-wetherbeei_contig56650.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig56650:16..516+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig56650:16..516+ >mRNA_P-wetherbeei_contig56650.1.1 ID=mRNA_P-wetherbeei_contig56650.1.1|Name=mRNA_P-wetherbeei_contig56650.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig56650:16..516+ (Phaeothamnion wetherbeei SAG_119_79)back to top |