mRNA_P-wetherbeei_contig5639.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5639.3.1
Unique NamemRNA_P-wetherbeei_contig5639.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5639.3.1 vs. uniprot
Match: W7T460_9STRA (Dynactin p62 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T460_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.020e-17
Identity = 54/140 (38.57%), Postives = 72/140 (51.43%), Query Frame = 1
Query:   22 VCVVYSDYNGRWRPLDELYFSTDSRCLVSNHPESMQEDVESFYCPQCNFFCVEAEAQGYLNRLAKLFSAAPPAAAAAA----------PQRAGCRFGCPHCNWSS-DQQGLVEDDADALAMTAMQLEREDPLSHHFAALL 408
            V VV++DY G W PL  L++S  S+CLVS HPES  E+VESFYC  C  +  +AEA    +R  + F      +A                AG  F C +C WSS D  GL+E   +AL     + E +DP +  + ALL
Sbjct:   36 VKVVFTDYQGWWAPLTHLFYSNASQCLVSAHPESSIEEVESFYCSHCLNYFADAEAASSYHRCPRCFDCPQCTSALLIISVDEESNHEENDAGYTFRCGYCRWSSADSIGLIESTPEALIERLKKTELDDPQAVRYRALL 175          
BLAST of mRNA_P-wetherbeei_contig5639.3.1 vs. uniprot
Match: A0A6H5KN23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN23_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 6.680e-15
Identity = 48/121 (39.67%), Postives = 60/121 (49.59%), Query Frame = 1
Query:   28 VVYSDYNGRWRPLDELYFSTDSRCLVSNHPESMQEDVESFYCPQCNFFCVEAEAQGYLNRLAKLFSAAPPAAAAAAPQ-----RAGCRFG---------CPHCNWSSDQQGLVEDDADALA 348
            V+Y DYNG  RPL  +YFS DSRCLV++HP S+QE+VES +CP C  F    +A    NR    F   P       P      R+   F          C +C W+S+  GLV  D   LA
Sbjct:    4 VLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAVSTENRCPHCFEC-PCCRCVLVPSPVSLDRSASSFSSAGTSYCLRCLYCQWTSEDSGLVAQDPAGLA 123          
BLAST of mRNA_P-wetherbeei_contig5639.3.1 vs. uniprot
Match: M4B947_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B947_HYAAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.200e-13
Identity = 52/137 (37.96%), Postives = 66/137 (48.18%), Query Frame = 1
Query:   10 ALDGVCVVYSDYNGRWRPLDELYFSTDSRCLVSNHPESMQEDVESFYCPQCNFFCVEAEAQGYLNRLAKLFSA--APPAAAAAAPQRAGCRFG-CPHCNWSSDQQGLVEDDADALAMTAMQLEREDPLSHHFAALLS 411
            A+DGVCV Y+   G   P+  L+FS     LV   P    E+ ES+YC          EA  Y NR ++ FS        + A      C F  C HC W S +  LV+DD DAL MTA++ ERE     +F AL S
Sbjct:    8 AVDGVCVRYACNCGHLAPVSALFFSETYSKLVCRRPSCSVEEFESYYCGNLLVNLPSKEASMYQNRSSRCFSCPTCETTLSVAFHDSKQCFFFLCAHCRWDSLELELVDDDPDALVMTAIKRERETVHEENFQALYS 144          
BLAST of mRNA_P-wetherbeei_contig5639.3.1 vs. uniprot
Match: D0N2V5_PHYIT (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=D0N2V5_PHYIT)

HSP 1 Score: 76.3 bits (186), Expect = 7.720e-13
Identity = 52/141 (36.88%), Postives = 66/141 (46.81%), Query Frame = 1
Query:   13 LDGVCVVYSDYNGRWRPLDELYFSTDSRCLVSNHPESMQEDVESFYCPQCNFFCVEAEAQGYLNRLAKLFSAAP-PAAAAAAPQRAGCRFGCPHCNWSSDQQGLVEDDADALAMTAMQLERE-------DPLSHHFAALLS 411
            +DGVCV Y+   G   P+  L+FS     LV   P    E+ ES+YC          EA  Y NR ++ FS      A + A       F C HC W S + GLV+DD DAL MTA+  ER+         L  H+A L S
Sbjct:    7 VDGVCVRYACKCGHLAPVSSLFFSETCEKLVCRLPRCSVEEFESYYCGNLLVNLPSKEASMYQNRSSRCFSCPTCETALSTAIHEQRYFFLCGHCRWDSLELGLVDDDPDALIMTAITRERQAAHEDVFQTLHSHYATLSS 147          
BLAST of mRNA_P-wetherbeei_contig5639.3.1 vs. uniprot
Match: D7FRF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF1_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.020e-11
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1
Query:   28 VVYSDYNGRWRPLDELYFSTDSRCLVSNHPESMQEDVESFYCPQCNFF 171
            V+Y DYNG  RPL  +YFS DSRCLV++HP S+QE+VES +CP C  F
Sbjct:    4 VLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSF 51          
BLAST of mRNA_P-wetherbeei_contig5639.3.1 vs. uniprot
Match: V9FF72_PHYPR (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=V9FF72_PHYPR)

HSP 1 Score: 72.8 bits (177), Expect = 1.280e-11
Identity = 53/147 (36.05%), Postives = 66/147 (44.90%), Query Frame = 1
Query:   19 GVCVVYSDYNGRWRPLDELYFSTDSRCLVSNHPESMQEDVESFYCPQCNFFCVEAEAQGYLNRLAKLFSAAPPAAAAAAPQRAGCR--FGCPHCNWSSDQQGLVEDDADALAMTAMQLERE-------DPLSHHFAALLSCAQRGTA 432
            GVCV Y+   G   P+  L+FS     LV   P    E+ ES+YC          EA  Y NR ++ FS  P      +      R  F C HC W S   GLV+DD DAL MTA+  ER+         L  H+A L S +  G A
Sbjct:   12 GVCVRYACKCGHLAPMCSLFFSETCEKLVCRLPRCSVEEFESYYCGNLLVNLPSKEASMYQNRSSRCFSC-PTCETVLSTVMHEQRYFFLCAHCRWDSLDLGLVDDDQDALIMTAITRERQAAHEDVFQALHSHYATLTSSSANGGA 157          
BLAST of mRNA_P-wetherbeei_contig5639.3.1 vs. uniprot
Match: A0A3M6VMA2_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VMA2_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.250e-9
Identity = 43/125 (34.40%), Postives = 59/125 (47.20%), Query Frame = 1
Query:   10 ALDGVCVVYSDYNGRWRPLDELYFSTDSRCLVSNHPESMQEDVESFYCPQCNFFCVEAEAQGYLNRLAKLFSAAP---PAAAAAAPQRAGCRFGCPHCNWSSDQQGLVEDDADALAMTAMQLERE 375
            +++ VCV Y+   G   P+  L+FS     LV   P    E+ ES+YC          EA  Y NR ++ FS        + A    +    F C HC W S +  LV+DD DAL MTA+  ER+
Sbjct:    5 SVEDVCVRYACKCGHLAPVSSLFFSETCEKLVCRAPGCSVEEFESYYCRNLAVNLPSKEASMYQNRSSRCFSCPECENTLSTAFHESKQRFFFLCAHCRWDSLKLELVDDDPDALIMTAITRERQ 129          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5639.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
W7T460_9STRA1.020e-1738.57Dynactin p62 n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A6H5KN23_9PHAE6.680e-1539.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
M4B947_HYAAE2.200e-1337.96Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
D0N2V5_PHYIT7.720e-1336.88Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
D7FRF1_ECTSI1.020e-1162.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
V9FF72_PHYPR1.280e-1136.05Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A3M6VMA2_9STRA4.250e-934.40Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5639contigP-wetherbeei_contig5639:2878..3727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo129812
PFAMsDynactin_p62
Model size576
Max annot lvl4776|Peronosporales
KEGG koko:K10426
KEGG Pathwayko04962,ko05016,map04962,map05016
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.86e-14
EggNOG OGsKOG3896@1|root,KOG3896@2759|Eukaryota,3Q7G8@4776|Peronosporales
Ec32 ortholog descriptionDynactin subunit 4
Ec32 orthologEc-21_002710.1
DescriptionDynactin p62 family
Cds size576
COG categoryN
BRITEko00000,ko00001,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186838.4698157-CDS-P-wetherbeei_contig5639:2877..32301683186838.4698157-CDS-P-wetherbeei_contig5639:2877..3230Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5639 2878..3230 -
1683186838.4927597-CDS-P-wetherbeei_contig5639:3504..37271683186838.4927597-CDS-P-wetherbeei_contig5639:3504..3727Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5639 3505..3727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5639.3.1prot_P-wetherbeei_contig5639.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5639 2878..3727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5639.3.1

>prot_P-wetherbeei_contig5639.3.1 ID=prot_P-wetherbeei_contig5639.3.1|Name=mRNA_P-wetherbeei_contig5639.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=192bp
MALALDGVCVVYSDYNGRWRPLDELYFSTDSRCLVSNHPESMQEDVESFY
CPQCNFFCVEAEAQGYLNRLAKLFSAAPPAAAAAAPQRAGCRFGCPHCNW
SSDQQGLVEDDADALAMTAMQLEREDPLSHHFAALLSCAQRGTAAAAAAA
RGRSVLMLPPAGSSLSSAAAAAAGAASHEGPRWCVANLEARL
back to top

mRNA from alignment at P-wetherbeei_contig5639:2878..3727-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5639.3.1 ID=mRNA_P-wetherbeei_contig5639.3.1|Name=mRNA_P-wetherbeei_contig5639.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=850bp|location=Sequence derived from alignment at P-wetherbeei_contig5639:2878..3727- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCTCGCTCTTGATGGCGTTTGCGTCGTGTACAGCGACTATAATGG TCGCTGGCGGCCCCTCGACGAGCTCTACTTTTCGACAGACAGTCGCTGCC TCGTCTCAAACCATCCCGAGAGCATGCAAGAGGACGTCGAGTCCTTTTAC TGCCCACAGTGCAACTTCTTTTGCGTCGAAGCAGAGGCGCAGGGTTACTT GAACAGGTTGGCAAAATTGTTTTGTGATTGACCTTAAATCGACGGGCGAG AGGGAAGTGTCTTCGAGCCTAAAGTCATAAACAGGAGCAAGTTTTTTACA ATTTTCTTCTCTGGCCTTAAGATCGAATGTCCGTTGCCTTCAGAATCATC CCTTCACCACCTGCTGACAAAGTCACATCTCTGCGCTGACCAGATGCCCC AGATGCTTCTGCTGCCCAGCGTGCGGGAGCGTCTTGGCGGCGCTTGACAT CACTTCGGAAAGGAGCAGCCCCGCTGCCGCTGCCGCCGCCGTTGCAGCCG CTGCGCCGCCCGCCGCGGCAGCTGCCGCCCCGCAGCGTGCCGGCTGCCGC TTCGGCTGCCCCCACTGCAACTGGTCGAGCGACCAGCAGGGCCTCGTCGA GGACGACGCCGACGCGCTCGCCATGACGGCGATGCAGCTGGAGCGGGAGG ACCCGCTGAGCCACCACTTCGCCGCGCTGCTCTCCTGCGCCCAGCGCGGC ACGGCCGCCGCCGCCGCCGCTGCCCGCGGCCGCTCAGTGCTCATGCTGCC GCCTGCCGGATCGTCTTTGTCGTCCGCGGCGGCAGCAGCGGCGGGAGCGG CGTCACACGAAGGGCCGCGCTGGTGCGTCGCCAACCTGGAGGCACGGCTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5639:2878..3727-

>mRNA_P-wetherbeei_contig5639.3.1 ID=mRNA_P-wetherbeei_contig5639.3.1|Name=mRNA_P-wetherbeei_contig5639.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=576bp|location=Sequence derived from alignment at P-wetherbeei_contig5639:2878..3727- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCTCGCTCTTGATGGCGTTTGCGTCGTGTACAGCGACTATAATGG
TCGCTGGCGGCCCCTCGACGAGCTCTACTTTTCGACAGACAGTCGCTGCC
TCGTCTCAAACCATCCCGAGAGCATGCAAGAGGACGTCGAGTCCTTTTAC
TGCCCACAGTGCAACTTCTTTTGCGTCGAAGCAGAGGCGCAGGGTTACTT
GAACAGGTTGGCAAAATTGTTTTCCGCTGCGCCGCCCGCCGCGGCAGCTG
CCGCCCCGCAGCGTGCCGGCTGCCGCTTCGGCTGCCCCCACTGCAACTGG
TCGAGCGACCAGCAGGGCCTCGTCGAGGACGACGCCGACGCGCTCGCCAT
GACGGCGATGCAGCTGGAGCGGGAGGACCCGCTGAGCCACCACTTCGCCG
CGCTGCTCTCCTGCGCCCAGCGCGGCACGGCCGCCGCCGCCGCCGCTGCC
CGCGGCCGCTCAGTGCTCATGCTGCCGCCTGCCGGATCGTCTTTGTCGTC
CGCGGCGGCAGCAGCGGCGGGAGCGGCGTCACACGAAGGGCCGCGCTGGT
GCGTCGCCAACCTGGAGGCACGGCTC
back to top