mRNA_P-wetherbeei_contig5639.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5639.3.1 vs. uniprot
Match: W7T460_9STRA (Dynactin p62 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T460_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.020e-17 Identity = 54/140 (38.57%), Postives = 72/140 (51.43%), Query Frame = 1
Query: 22 VCVVYSDYNGRWRPLDELYFSTDSRCLVSNHPESMQEDVESFYCPQCNFFCVEAEAQGYLNRLAKLFSAAPPAAAAAA----------PQRAGCRFGCPHCNWSS-DQQGLVEDDADALAMTAMQLEREDPLSHHFAALL 408
V VV++DY G W PL L++S S+CLVS HPES E+VESFYC C + +AEA +R + F +A AG F C +C WSS D GL+E +AL + E +DP + + ALL
Sbjct: 36 VKVVFTDYQGWWAPLTHLFYSNASQCLVSAHPESSIEEVESFYCSHCLNYFADAEAASSYHRCPRCFDCPQCTSALLIISVDEESNHEENDAGYTFRCGYCRWSSADSIGLIESTPEALIERLKKTELDDPQAVRYRALL 175
BLAST of mRNA_P-wetherbeei_contig5639.3.1 vs. uniprot
Match: A0A6H5KN23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN23_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 6.680e-15 Identity = 48/121 (39.67%), Postives = 60/121 (49.59%), Query Frame = 1
Query: 28 VVYSDYNGRWRPLDELYFSTDSRCLVSNHPESMQEDVESFYCPQCNFFCVEAEAQGYLNRLAKLFSAAPPAAAAAAPQ-----RAGCRFG---------CPHCNWSSDQQGLVEDDADALA 348
V+Y DYNG RPL +YFS DSRCLV++HP S+QE+VES +CP C F +A NR F P P R+ F C +C W+S+ GLV D LA
Sbjct: 4 VLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAVSTENRCPHCFEC-PCCRCVLVPSPVSLDRSASSFSSAGTSYCLRCLYCQWTSEDSGLVAQDPAGLA 123
BLAST of mRNA_P-wetherbeei_contig5639.3.1 vs. uniprot
Match: M4B947_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B947_HYAAE) HSP 1 Score: 77.8 bits (190), Expect = 2.200e-13 Identity = 52/137 (37.96%), Postives = 66/137 (48.18%), Query Frame = 1
Query: 10 ALDGVCVVYSDYNGRWRPLDELYFSTDSRCLVSNHPESMQEDVESFYCPQCNFFCVEAEAQGYLNRLAKLFSA--APPAAAAAAPQRAGCRFG-CPHCNWSSDQQGLVEDDADALAMTAMQLEREDPLSHHFAALLS 411
A+DGVCV Y+ G P+ L+FS LV P E+ ES+YC EA Y NR ++ FS + A C F C HC W S + LV+DD DAL MTA++ ERE +F AL S
Sbjct: 8 AVDGVCVRYACNCGHLAPVSALFFSETYSKLVCRRPSCSVEEFESYYCGNLLVNLPSKEASMYQNRSSRCFSCPTCETTLSVAFHDSKQCFFFLCAHCRWDSLELELVDDDPDALVMTAIKRERETVHEENFQALYS 144
BLAST of mRNA_P-wetherbeei_contig5639.3.1 vs. uniprot
Match: D0N2V5_PHYIT (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=D0N2V5_PHYIT) HSP 1 Score: 76.3 bits (186), Expect = 7.720e-13 Identity = 52/141 (36.88%), Postives = 66/141 (46.81%), Query Frame = 1
Query: 13 LDGVCVVYSDYNGRWRPLDELYFSTDSRCLVSNHPESMQEDVESFYCPQCNFFCVEAEAQGYLNRLAKLFSAAP-PAAAAAAPQRAGCRFGCPHCNWSSDQQGLVEDDADALAMTAMQLERE-------DPLSHHFAALLS 411
+DGVCV Y+ G P+ L+FS LV P E+ ES+YC EA Y NR ++ FS A + A F C HC W S + GLV+DD DAL MTA+ ER+ L H+A L S
Sbjct: 7 VDGVCVRYACKCGHLAPVSSLFFSETCEKLVCRLPRCSVEEFESYYCGNLLVNLPSKEASMYQNRSSRCFSCPTCETALSTAIHEQRYFFLCGHCRWDSLELGLVDDDPDALIMTAITRERQAAHEDVFQTLHSHYATLSS 147
BLAST of mRNA_P-wetherbeei_contig5639.3.1 vs. uniprot
Match: D7FRF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF1_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 1.020e-11 Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1
Query: 28 VVYSDYNGRWRPLDELYFSTDSRCLVSNHPESMQEDVESFYCPQCNFF 171
V+Y DYNG RPL +YFS DSRCLV++HP S+QE+VES +CP C F
Sbjct: 4 VLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSF 51
BLAST of mRNA_P-wetherbeei_contig5639.3.1 vs. uniprot
Match: V9FF72_PHYPR (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=V9FF72_PHYPR) HSP 1 Score: 72.8 bits (177), Expect = 1.280e-11 Identity = 53/147 (36.05%), Postives = 66/147 (44.90%), Query Frame = 1
Query: 19 GVCVVYSDYNGRWRPLDELYFSTDSRCLVSNHPESMQEDVESFYCPQCNFFCVEAEAQGYLNRLAKLFSAAPPAAAAAAPQRAGCR--FGCPHCNWSSDQQGLVEDDADALAMTAMQLERE-------DPLSHHFAALLSCAQRGTA 432
GVCV Y+ G P+ L+FS LV P E+ ES+YC EA Y NR ++ FS P + R F C HC W S GLV+DD DAL MTA+ ER+ L H+A L S + G A
Sbjct: 12 GVCVRYACKCGHLAPMCSLFFSETCEKLVCRLPRCSVEEFESYYCGNLLVNLPSKEASMYQNRSSRCFSC-PTCETVLSTVMHEQRYFFLCAHCRWDSLDLGLVDDDQDALIMTAITRERQAAHEDVFQALHSHYATLTSSSANGGA 157
BLAST of mRNA_P-wetherbeei_contig5639.3.1 vs. uniprot
Match: A0A3M6VMA2_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VMA2_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 4.250e-9 Identity = 43/125 (34.40%), Postives = 59/125 (47.20%), Query Frame = 1
Query: 10 ALDGVCVVYSDYNGRWRPLDELYFSTDSRCLVSNHPESMQEDVESFYCPQCNFFCVEAEAQGYLNRLAKLFSAAP---PAAAAAAPQRAGCRFGCPHCNWSSDQQGLVEDDADALAMTAMQLERE 375
+++ VCV Y+ G P+ L+FS LV P E+ ES+YC EA Y NR ++ FS + A + F C HC W S + LV+DD DAL MTA+ ER+
Sbjct: 5 SVEDVCVRYACKCGHLAPVSSLFFSETCEKLVCRAPGCSVEEFESYYCRNLAVNLPSKEASMYQNRSSRCFSCPECENTLSTAFHESKQRFFFLCAHCRWDSLKLELVDDDPDALIMTAITRERQ 129 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5639.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5639.3.1 >prot_P-wetherbeei_contig5639.3.1 ID=prot_P-wetherbeei_contig5639.3.1|Name=mRNA_P-wetherbeei_contig5639.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=192bp MALALDGVCVVYSDYNGRWRPLDELYFSTDSRCLVSNHPESMQEDVESFYback to top mRNA from alignment at P-wetherbeei_contig5639:2878..3727- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5639.3.1 ID=mRNA_P-wetherbeei_contig5639.3.1|Name=mRNA_P-wetherbeei_contig5639.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=850bp|location=Sequence derived from alignment at P-wetherbeei_contig5639:2878..3727- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5639:2878..3727- >mRNA_P-wetherbeei_contig5639.3.1 ID=mRNA_P-wetherbeei_contig5639.3.1|Name=mRNA_P-wetherbeei_contig5639.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=576bp|location=Sequence derived from alignment at P-wetherbeei_contig5639:2878..3727- (Phaeothamnion wetherbeei SAG_119_79)back to top |