mRNA_P-wetherbeei_contig5610.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5610.1.1
Unique NamemRNA_P-wetherbeei_contig5610.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5610.1.1 vs. uniprot
Match: Q8QNL6_ESV1K (EsV-1-50 n=3 Tax=root TaxID=1 RepID=Q8QNL6_ESV1K)

HSP 1 Score: 161 bits (407), Expect = 4.570e-42
Identity = 94/256 (36.72%), Postives = 137/256 (53.52%), Query Frame = 1
Query:   25 IANLEPSTDYEVLVECILGDSWVSHDSMMFVTESEHSPHFERLYESIKRPDGSYDATVLDEASHDRFLKHFRDFVQTGDILETPIKLHGAKRTVTATAVAESGSFDVKDSQHVILPFSPQSGSGKVFLSRN---------------------GNSRTVKYSDSTNSITVEGKTYSIGDRFQMLGRTVTVADGSIVLVFSDSVVGSYPHSAATASAVTSTYGSNFVRDFTANAGYMMATKDEGSAASSNISGMIYDT 729
            + NLEP T Y+V V     ++ +S +   F T S   PH E LY S++  DG+YDAT  D++ HD FLK+F D VQ GD +   + L GA + +   AV E  + DV   Q++ LPFS  SGS +V    N                     G    + Y+  +++ T+    Y +GD+F + G+ VTVADGSIVLVF D+V   YP + +TAS V  T GS F +++T N   ++ +K  G++  +  S  +YDT
Sbjct:   48 LVNLEPDTSYDVRVTSASSNTVLSDE---FQTWSLEDPHLENLYASVRLEDGTYDATQFDKSVHDVFLKYFNDIVQNGDTIYASVILKGAPKNIETRAVTEGSTTDVVGDQNLFLPFSRDSGSAQVVTLSNSIPIDDVEATAVSDVAVAQDLGGDVELLYTPESDTFTIGNNVYGVGDKFNLFGKMVTVADGSIVLVFEDTVAKVYPFNTSTASNVIGTLGSQFAKNYTCNVINVVGSKTTGASGDTYSSSWVYDT 300          
BLAST of mRNA_P-wetherbeei_contig5610.1.1 vs. uniprot
Match: B5LWF4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF4_9PHYC)

HSP 1 Score: 139 bits (351), Expect = 5.460e-34
Identity = 93/266 (34.96%), Postives = 141/266 (53.01%), Query Frame = 1
Query:    7 EDLQAVIANLEPSTDYEVLVECILGDSWVSHDSMMFVTESEHSPHFERLYESIKRPDGSYDATVLDEASHDRFLKHFRDFVQTGDILETPIKLHGAKRTV-TATAVAESGSFDVKDSQHVILPFSPQSGSGKV--FLSRNGNSR--TVKYSDSTNSITVEGKTYSIGDRFQMLGRTVTVADGSIVLVFSDSVVGSYPHSAATASAVTSTYGSNFVRDFTANAGYMMATKDEGSAASSNISGMIYDTHPH*HGEGDFSYCSISRRRH 789
            ++   V+ NLEP T Y V V      S   + S  F T+S  +P    LY SI+ P+G +D T  D   HD F+++F   V  GD +   + ++GA + V T  A  E  SFDV    ++ LPF  ++G   V     R+  S   T+ Y  ST+++   G  Y +GD+F++  RTVTVADGSIVL+FSD+V  ++P  A+ A +V  + GS+F+++ T N   ++  K +G   S+  S  I++T        D S   +SR  H
Sbjct:   61 DEAAVVVVNLEPGTTYAVSVRSAETKSPDLYGS--FTTKSSENPELSALYSSIRTPEGIFDTTRFDTKLHDIFVENFSSIVSPGDRILAKVVVNGAPQEVMTVAASGEGSSFDVDAESNIFLPFHRKTGEALVQTVTLRHPTSADATLVYDSSTDNLAYGGDHYGVGDKFELFNRTVTVADGSIVLLFSDTVAKTWPFDASKALSVVGSAGSHFMKNITCNTHNLVGQKIDGETGSTYNSAWIHNT-------DDSSTLEVSRMVH 317          
BLAST of mRNA_P-wetherbeei_contig5610.1.1 vs. uniprot
Match: Q6XLT5_9PHYC (FirrV-1-N1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT5_9PHYC)

HSP 1 Score: 136 bits (343), Expect = 5.840e-33
Identity = 95/271 (35.06%), Postives = 137/271 (50.55%), Query Frame = 1
Query:    1 VTEDLQAVIANLEPSTDYEVLVECILGDSWVSHDSMMFVTESEHSPHFERLYESIKRPDGSYDATVLDEASHDRFLKHFRDFVQTGDILETPIKLHGAKRTVTATAVAESGSFDVK-DSQ-HVILPFSPQSGSGK------VFLSRNGNSRTVKYSDSTNSITVEGKTYSIGDRFQMLGRTVTVADGSIVLVFSDSVVGSYPHSAATASAVTSTYGSNFVRDFTANAGYMMATKDEGSAASSNISGMIYDTHPH*HGEGDFSYCSISRRRH 789
            V  +   V+ NL PST Y V V+     S  +  +  FVT S  +P    LY SI+  DG YD T  ++  HD FL++F   V  GD +   + ++G  + V   A  E    +V  D+Q +V LPF  +           V L   G   T+ Y   TNS+   G  YS GD+FQ+  RTVTVADGSIVL+F+D+V  S+P  A  A +V  + GS+F+++ T N   ++  K +G+  S+  S  I++T        D S   +SR  H
Sbjct:   41 VDREAAVVVVNLSPSTTYHVTVKSARDTS--ADLNGQFVTMSAANPCLHNLYSSIRTTDGIYDTTRFEKELHDVFLENFSGVVSPGDRILAKVDVNGLSQHVLTVAATEGSDLEVDVDAQANVFLPFCSKHKDKDTEDIQTVVLKTTGEDATLVYDGHTNSVAYGGDAYSTGDKFQLFNRTVTVADGSIVLLFADTVAKSWPFDATKALSVVGSAGSHFMKNITCNVHNLVGQKTDGTTGSTYNSAWIHNT-------DDSSTLEVSRMVH 302          
BLAST of mRNA_P-wetherbeei_contig5610.1.1 vs. uniprot
Match: Q6XLY0_9PHYC (FirrV-1-B56 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLY0_9PHYC)

HSP 1 Score: 134 bits (337), Expect = 4.090e-32
Identity = 89/247 (36.03%), Postives = 128/247 (51.82%), Query Frame = 1
Query:    1 VTEDLQAVIANLEPSTDYEVLVECILGDSWVSHDSMMFVTESEHSPHFERLYESIKRPDGSYDATVLDEASHDRFLKHFRDFVQTGDILETPIKLHGAKRTVTATAVAESGSF--DVKDSQHVILPFSPQSGSGKV----FLSRNGNS-RTVKYSDSTNSITVEGKTYSIGDRFQMLGRTVTVADGSIVLVFSDSVVGSYPHSAATASAVTSTYGSNFVRDFTANAGYMMATKDEGSAASSNISGMI 720
            V  +   VI NL   T Y V +E    +S     +  FVT  +  P    LY SI+RPDG YD T  ++  HD FL+HF   V  GD +   ++++G  + V A A  E      D     +V LPF P   S  V      ++N  S  T+ Y   T+ +   G  YS+GD+FQM  +TVTVADGSIVL+FSD+V  ++P  A+ A AV  + GS+F+++ T N   ++  K  G + S+  S  +
Sbjct:   41 VEHEAAIVIVNLHADTTYHVSLESTAPES--QRLTGHFVTCPKDQPCLANLYASIRRPDGVYDTTSFEKELHDVFLQHFSTIVSPGDRIFAKVEVNGVSQNVMAIAATEGVELEIDAAPDTNVFLPFFPGDNSEAVQTVTLKNKNHESLETLVYDAHTDKLAYGGDAYSVGDKFQMFNKTVTVADGSIVLLFSDTVAKTWPFDASKALAVVGSAGSHFMKNITCNVQNLVGQKTTGESGSTYSSAWV 285          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5610.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q8QNL6_ESV1K4.570e-4236.72EsV-1-50 n=3 Tax=root TaxID=1 RepID=Q8QNL6_ESV1K[more]
B5LWF4_9PHYC5.460e-3434.96Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XLT5_9PHYC5.840e-3335.06FirrV-1-N1 n=1 Tax=Feldmannia irregularis virus a ... [more]
Q6XLY0_9PHYC4.090e-3236.03FirrV-1-B56 n=1 Tax=Feldmannia irregularis virus a... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5610contigP-wetherbeei_contig5610:591..1680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1090
Hectar predicted targeting categoryother localisation
Exons1
Cds size636
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.0723774-UTR-P-wetherbeei_contig5610:590..9391683186835.0723774-UTR-P-wetherbeei_contig5610:590..939Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5610 591..939 -
1683186835.0920916-UTR-P-wetherbeei_contig5610:1575..16801683186835.0920916-UTR-P-wetherbeei_contig5610:1575..1680Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5610 1576..1680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.0826895-CDS-P-wetherbeei_contig5610:939..15751683186835.0826895-CDS-P-wetherbeei_contig5610:939..1575Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5610 940..1575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5610.1.1prot_P-wetherbeei_contig5610.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5610 940..1575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5610.1.1

>prot_P-wetherbeei_contig5610.1.1 ID=prot_P-wetherbeei_contig5610.1.1|Name=mRNA_P-wetherbeei_contig5610.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=212bp
MMFVTESEHSPHFERLYESIKRPDGSYDATVLDEASHDRFLKHFRDFVQT
GDILETPIKLHGAKRTVTATAVAESGSFDVKDSQHVILPFSPQSGSGKVF
LSRNGNSRTVKYSDSTNSITVEGKTYSIGDRFQMLGRTVTVADGSIVLVF
SDSVVGSYPHSAATASAVTSTYGSNFVRDFTANAGYMMATKDEGSAASSN
ISGMIYDTHPH*
back to top

mRNA from alignment at P-wetherbeei_contig5610:591..1680-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5610.1.1 ID=mRNA_P-wetherbeei_contig5610.1.1|Name=mRNA_P-wetherbeei_contig5610.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1090bp|location=Sequence derived from alignment at P-wetherbeei_contig5610:591..1680- (Phaeothamnion wetherbeei SAG_119_79)
GTCACAGAGGACCTGCAAGCTGTCATTGCAAACTTGGAACCGAGTACTGA TTATGAGGTCCTTGTGGAGTGCATCCTTGGTGATTCATGGGTTTCGCATG ACTCCATGATGTTTGTGACTGAGTCTGAACATTCCCCTCATTTTGAACGC CTTTACGAGAGCATCAAAAGGCCAGATGGGTCGTACGACGCCACCGTACT CGATGAAGCATCCCACGATAGATTCCTGAAGCACTTCCGAGACTTTGTTC AAACGGGCGACATCCTGGAAACCCCCATCAAGCTTCACGGGGCCAAGCGC ACAGTTACTGCCACTGCCGTAGCCGAGTCTGGCTCCTTTGATGTCAAGGA CTCCCAACATGTCATACTTCCCTTTTCACCCCAATCTGGCAGTGGAAAGG TCTTTCTGTCGCGGAATGGGAATTCCAGAACGGTAAAATACAGCGACTCC ACAAATTCCATCACCGTCGAAGGGAAAACCTATTCCATCGGAGACCGTTT TCAGATGCTCGGCAGGACTGTGACTGTCGCAGACGGTTCTATCGTTCTTG TCTTCTCCGATTCAGTCGTAGGATCTTATCCGCATTCAGCGGCGACTGCA AGTGCCGTCACTAGCACATATGGTTCTAATTTTGTTCGTGACTTCACGGC AAATGCTGGGTACATGATGGCGACGAAAGACGAGGGTTCTGCCGCCAGTT CGAACATCTCCGGAATGATTTACGATACGCACCCCCACTGACACGGTGAA GGAGATTTCTCGTATTGTTCAATCAGTCGACGCAGACACAACTTCGGGAA CCATTTCTCTTGGTGTGCTGCGGACAAATGGCGAGGACTCATTCATCGAA CCTACGATTGAAAGTTCTTACAATGAGACAAAGATTACCACACAGGATTC AACTGGCTCCACCGTGACTGTTGCAACAGTTGCAAATGATGGAATCAGTT TTGATTCTGATACCGCATCATTGTACTTTGGCGCCGGTAAGAATTTTAGG TTTATTTTTGTGGACGGTGCAAACCCCGTGTTGCAGCTACAGGCGTACGA CGATGCCAGTTCGAGCTACAAGGTGAAAATGGAAATCACA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5610:591..1680-

>mRNA_P-wetherbeei_contig5610.1.1 ID=mRNA_P-wetherbeei_contig5610.1.1|Name=mRNA_P-wetherbeei_contig5610.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=636bp|location=Sequence derived from alignment at P-wetherbeei_contig5610:591..1680- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGTTTGTGACTGAGTCTGAACATTCCCCTCATTTTGAACGCCTTTA
CGAGAGCATCAAAAGGCCAGATGGGTCGTACGACGCCACCGTACTCGATG
AAGCATCCCACGATAGATTCCTGAAGCACTTCCGAGACTTTGTTCAAACG
GGCGACATCCTGGAAACCCCCATCAAGCTTCACGGGGCCAAGCGCACAGT
TACTGCCACTGCCGTAGCCGAGTCTGGCTCCTTTGATGTCAAGGACTCCC
AACATGTCATACTTCCCTTTTCACCCCAATCTGGCAGTGGAAAGGTCTTT
CTGTCGCGGAATGGGAATTCCAGAACGGTAAAATACAGCGACTCCACAAA
TTCCATCACCGTCGAAGGGAAAACCTATTCCATCGGAGACCGTTTTCAGA
TGCTCGGCAGGACTGTGACTGTCGCAGACGGTTCTATCGTTCTTGTCTTC
TCCGATTCAGTCGTAGGATCTTATCCGCATTCAGCGGCGACTGCAAGTGC
CGTCACTAGCACATATGGTTCTAATTTTGTTCGTGACTTCACGGCAAATG
CTGGGTACATGATGGCGACGAAAGACGAGGGTTCTGCCGCCAGTTCGAAC
ATCTCCGGAATGATTTACGATACGCACCCCCACTGA
back to top