mRNA_P-wetherbeei_contig56018.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56018.1.1
Unique NamemRNA_P-wetherbeei_contig56018.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56018.1.1 vs. uniprot
Match: A0A6J4VRG1_9CHLR (Uncharacterized protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4VRG1_9CHLR)

HSP 1 Score: 66.6 bits (161), Expect = 2.720e-11
Identity = 56/126 (44.44%), Postives = 71/126 (56.35%), Query Frame = 1
Query:    1 RRSRLDREVDEILNSATRENPLP-PTPIASRRRPS-TGPS-TGDRARSVLATTVDTLMTVPLLTAVGFGIACAVVSPYSPLLATLFAVLALVVLVAPYVQAARRASTPGGGP--KMWRGRVMDDPP 363
            R+SRLD EV+EIL  +    P P P    ++  PS TGP  T      V+   +DT    PLL A+GF I   +VS  SPLLATLFA+ A+V ++ P +Q  RR   P   P  KMWRGR +D  P
Sbjct:   17 RKSRLDLEVEEILRKSDNVRPFPNPRSRPAKATPSRTGPGPTPASIPPVVRKALDT----PLLLALGFAILALMVSSASPLLATLFALAAVVFVLFPVIQRYRR---PSAAPETKMWRGREIDSRP 135          
BLAST of mRNA_P-wetherbeei_contig56018.1.1 vs. uniprot
Match: A0A7W0ABP1_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0ABP1_9CHLR)

HSP 1 Score: 65.5 bits (158), Expect = 7.400e-11
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 1
Query:    4 RSRLDREVDEILNSATRENPLPPTPIASRRRPSTGPSTGDRARSVLATTV----DTLMTVPLLTAVGFGIACAVVSPYSPLLATLFAVLALVVLVAPYVQAARRASTPGGGPKMWRGRVMD 354
            +SRLDRE+DEIL+       LPP P   R R     +   R+   + TT+      L+T P++ A+   +   ++S  SPL A+LF + A++ +V P  Q  RR STP    +MWRG+V+D
Sbjct:   16 KSRLDRELDEILSKDENIRLLPPPPKPIRPR-----TKAPRSAPTMGTTIPPQFQKLLTAPIVIALALAVLALLISDLSPLFASLFCLAAVICIVHPIFQQMRRKSTPPDT-RMWRGQVVD 130          
BLAST of mRNA_P-wetherbeei_contig56018.1.1 vs. uniprot
Match: A0A7W0KGR4_9CHLR (Uncharacterized protein (Fragment) n=2 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0KGR4_9CHLR)

HSP 1 Score: 61.2 bits (147), Expect = 2.880e-9
Identity = 46/126 (36.51%), Postives = 65/126 (51.59%), Query Frame = 1
Query:    4 RSRLDREVDEILNSATRENPLPPTPIASRRRPSTGPS---TGDRARSVLATTVDTLMTVPLLTAVGFGIACAVVSPYSPLLATLFAVLALVVLVAPYVQAARRASTPGGGPKMWRGRVMDDPPRRP 372
            +SRLDRE++EIL        LPP P A +  P   P     G    S++      L+  P++ A+G  I   +VS  S LLATL ++ A+  +V P  Q  RR  +     +MWRG+V+D  P RP
Sbjct:   16 KSRLDRELEEILARNENIRLLPPPPQAPKT-PRAKPMPVRAGSSFESMIPPRARQLLAAPIVMALGLAIVALLVSDISALLATLISLAAVACIVVPMAQRFRRGPSAPPDIRMWRGQVVDAMPPRP 140          
BLAST of mRNA_P-wetherbeei_contig56018.1.1 vs. uniprot
Match: A0A7W0PNG0_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0PNG0_9CHLR)

HSP 1 Score: 60.8 bits (146), Expect = 4.720e-9
Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = 1
Query:    4 RSRLDREVDEILNSATRENPLPPTPIASRRRPSTGPSTGDRARSV---LATTVDTLMTVPLLTAVGFGIACAVVSPYSPLLATLFAVLALVVLVAPYVQAARRASTPGGGPKMWRGRVMDDPP 363
            +SRLDRE+DEIL+       LPP P AS+  P   P+    A S+   +      L+  P++ A+G  I   +VS  S LLAT+ ++ A+V +V P VQ  RR  +     +MWRG+V+   P
Sbjct:   16 KSRLDRELDEILSKNENIRLLPPPPQASKP-PGPKPAPRQSASSIESMIPPKARELLASPVVLALGLAIVALLVSDLSALLATMLSLAAVVCVVMPMVQRFRRRPSAPPDIRMWRGQVIGSQP 137          
BLAST of mRNA_P-wetherbeei_contig56018.1.1 vs. uniprot
Match: A0A7V9VHZ7_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VHZ7_9CHLR)

HSP 1 Score: 50.8 bits (120), Expect = 2.660e-5
Identity = 45/125 (36.00%), Postives = 66/125 (52.80%), Query Frame = 1
Query:   10 RLDREVDEILNSATRENPLP------PTPIASRR-RPSTGPSTGDRARSVLATTVDTLMTVPLLTAVGFGIACAVVSPYSPLLATLFAVLALVVLVAPYVQAARRASTPGGGPKMWRGRVMDDPP 363
            RL REVDEIL  A R  P+          IA+R+ R  + P      + +    +   M +P+LTA+ F I  A ++P+  LLATLFA+ A+V++  P+  A R+  T       WRGRV+ + P
Sbjct:   13 RLQREVDEILEKA-RARPISFQQKVDQKRIAARQQRQQSSPD----VQLLKGNAIRLAMKIPILTAIVFAIIAAYLAPHLSLLATLFALAAVVMVFIPF--AVRQPETSPADQARWRGRVVSNLP 130          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56018.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6J4VRG1_9CHLR2.720e-1144.44Uncharacterized protein n=1 Tax=uncultured Thermom... [more]
A0A7W0ABP1_9CHLR7.400e-1137.19Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A7W0KGR4_9CHLR2.880e-936.51Uncharacterized protein (Fragment) n=2 Tax=Chlorof... [more]
A0A7W0PNG0_9CHLR4.720e-937.40Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A7V9VHZ7_9CHLR2.660e-536.00Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56018contigP-wetherbeei_contig56018:70..456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size387
Hectar predicted targeting categorysignal anchor
Exons1
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186833.7247763-CDS-P-wetherbeei_contig56018:69..4561683186833.7247763-CDS-P-wetherbeei_contig56018:69..456Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56018 70..456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56018.1.1prot_P-wetherbeei_contig56018.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56018 70..456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56018.1.1

>prot_P-wetherbeei_contig56018.1.1 ID=prot_P-wetherbeei_contig56018.1.1|Name=mRNA_P-wetherbeei_contig56018.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
RRSRLDREVDEILNSATRENPLPPTPIASRRRPSTGPSTGDRARSVLATT
VDTLMTVPLLTAVGFGIACAVVSPYSPLLATLFAVLALVVLVAPYVQAAR
RASTPGGGPKMWRGRVMDDPPRRPRGIGE
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mRNA from alignment at P-wetherbeei_contig56018:70..456-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56018.1.1 ID=mRNA_P-wetherbeei_contig56018.1.1|Name=mRNA_P-wetherbeei_contig56018.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig56018:70..456- (Phaeothamnion wetherbeei SAG_119_79)
CGACGCTCCCGCCTCGACCGTGAGGTGGACGAGATCCTCAACTCCGCGAC GCGGGAGAACCCGCTCCCACCCACCCCGATCGCGTCGCGCCGGCGTCCCT CGACCGGGCCCAGCACCGGGGATCGCGCGCGGTCCGTCCTGGCGACGACC GTGGACACGCTGATGACCGTGCCGCTGCTCACGGCGGTCGGATTCGGGAT CGCCTGCGCGGTCGTCTCGCCCTACTCGCCGCTGCTCGCGACCCTCTTCG CGGTGCTCGCGCTGGTCGTCCTGGTGGCGCCCTACGTGCAGGCAGCACGA CGCGCCTCCACGCCCGGCGGCGGGCCGAAGATGTGGCGGGGCCGGGTGAT GGACGACCCGCCGCGCCGTCCGCGTGGCATCGGCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56018:70..456-

>mRNA_P-wetherbeei_contig56018.1.1 ID=mRNA_P-wetherbeei_contig56018.1.1|Name=mRNA_P-wetherbeei_contig56018.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig56018:70..456- (Phaeothamnion wetherbeei SAG_119_79)
CGACGCTCCCGCCTCGACCGTGAGGTGGACGAGATCCTCAACTCCGCGAC
GCGGGAGAACCCGCTCCCACCCACCCCGATCGCGTCGCGCCGGCGTCCCT
CGACCGGGCCCAGCACCGGGGATCGCGCGCGGTCCGTCCTGGCGACGACC
GTGGACACGCTGATGACCGTGCCGCTGCTCACGGCGGTCGGATTCGGGAT
CGCCTGCGCGGTCGTCTCGCCCTACTCGCCGCTGCTCGCGACCCTCTTCG
CGGTGCTCGCGCTGGTCGTCCTGGTGGCGCCCTACGTGCAGGCAGCACGA
CGCGCCTCCACGCCCGGCGGCGGGCCGAAGATGTGGCGGGGCCGGGTGAT
GGACGACCCGCCGCGCCGTCCGCGTGGCATCGGCGAG
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