mRNA_P-wetherbeei_contig1250.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1250.2.1
Unique NamemRNA_P-wetherbeei_contig1250.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Match: A0A0D6EJ02_SPOSA (tRNA-intron lyase (Fragment) n=1 Tax=Sporidiobolus salmonicolor TaxID=5005 RepID=A0A0D6EJ02_SPOSA)

HSP 1 Score: 62.4 bits (150), Expect = 5.720e-7
Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 2 
Query:  344 TIFVAPASSAQ---HPAAAA-SYLSSLTAQNYSTSNPATPLLESAQAAVFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLVLSSAAPRKDPVDL 634
            TI + P+SS+    HP+++A SY +   AQ     N  T  L+ A+  VFEDLWR+GY++ G   +G DFLVY  +P R H+   + VLS+      P+DL
Sbjct:  204 TILIDPSSSSYAWYHPSSSAVSYPTIEAAQQAGVWNYPTNELQEARCRVFEDLWRKGYYMGGGLRFGGDFLVYPGDPLRYHSHFTLTVLSTPLTAIMPLDL 304
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BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Match: A0A5C5FU61_9BASI (tRNA-intron lyase n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5FU61_9BASI)

HSP 1 Score: 61.6 bits (148), Expect = 1.190e-6
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 2 
Query:  434 SNPATPLLESAQAAVFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLVLSSAAPRKDPVDL 634
            S P TPL E A+  VFEDLWRRGY++ G   +G DFLVY  +P R H+   + VLS+ +    P+DL
Sbjct:  272 SYPQTPLQE-ARCRVFEDLWRRGYYMGGGLRFGGDFLVYPGDPLRYHSHFTLTVLSTPSTSLMPLDL 337
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BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Match: G4ZGP5_PHYSP (tRNA-intron lyase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZGP5_PHYSP)

HSP 1 Score: 57.8 bits (138), Expect = 8.420e-6
Identity = 42/134 (31.34%), Postives = 61/134 (45.52%), Query Frame = 2 
Query:  476 VFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLVLSSAAPRKDPVDLTTSAAAEPSRSDEIHPISIAAFVRAQTAVAKHAVLACVTLGLKENGGD----GHASSDAGEFYVACSPPLADTRKGPSERD 865
            VF DLW RGY VT  + +GADFLVY D+P++ HA A V+V       KD               +E   + + +F R    V K  + ACV    ++  GD    G  S      Y++ +  L  +R+  S  +
Sbjct:  127 VFRDLWERGYVVTFGSKFGADFLVYKDDPKKTHAVALVVV-------KD-------------YEEEFARVDLVSFCRVAKMVKKKLLFACVRTNGEDKKGDEKKDGSGSEAQSVVYISLTHALLVSRQEASAEE 240
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BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Match: A0A125PJ59_9BASI (tRNA-splicing endonuclease subunit Sen34 n=2 Tax=unclassified Rhodotorula TaxID=2640191 RepID=A0A125PJ59_9BASI)

HSP 1 Score: 58.2 bits (139), Expect = 1.450e-5
Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 2 
Query:  455 LESAQAAVFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLVLSSAAPRKDPVDLTTSAAAEPSRSDEIHPISIAAFVRAQTAVAKHAVLAC 745
            L+ A+  VFEDLWRRG+++ G   +G DFLVY  +P R H+   + VLS+          TT+          I P+ + A+ R  TAV K  +L C
Sbjct:  261 LQEARCRVFEDLWRRGFYMGGGMRFGGDFLVYPGDPLRYHSHFTLTVLSTP---------TTT----------IMPLDLVAYGRLATAVKKAHLLGC 338
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BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Match: M4B4X1_HYAAE (tRNA-intron lyase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B4X1_HYAAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.640e-5
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 2 
Query:  476 VFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLV 595
            VF DLW RGY VT  + +GADFL+Y D+P+R HA A ++V
Sbjct:   22 VFRDLWERGYVVTFGSKFGADFLIYKDDPKRAHAEALIVV 61
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BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Match: W2GQM7_PHYPR (tRNA-intron lyase n=7 Tax=Phytophthora TaxID=4783 RepID=W2GQM7_PHYPR)

HSP 1 Score: 56.6 bits (135), Expect = 2.160e-5
Identity = 40/123 (32.52%), Postives = 53/123 (43.09%), Query Frame = 2 
Query:  476 VFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLVLSSAAPRKDPVDLTTSAAAEPSRSDEIHPISIAAFVRAQTAVAKHAVLACVTLG--LKENGG-----DGHASSDAGEFYVACS 823
            VF DLW +GY VT  + +GADFL+Y D P+R HA A ++V                        +E   + + +F R    V K  V ACV      K  GG     +G  S  AG+  V  S
Sbjct:  128 VFRDLWEKGYIVTFGSKFGADFLIYKDNPKRAHAVALIVVKGY--------------------EEEFSRVDVVSFCRVAKMVKKQLVFACVRASEEYKSGGGKMDDTEGSNSEVAGDSVVYVS 230
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BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Match: A0A2P4XTR3_9STRA (tRNA-intron lyase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XTR3_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.500e-5
Identity = 37/116 (31.90%), Postives = 51/116 (43.97%), Query Frame = 2 
Query:  476 VFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLVLSSAAPRKDPVDLTTSAAAEPSRSDEIHPISIAAFVRAQTAVAKHAVLACVTLGLKENGGDGHASS-DAGEFYVAC 820
            VF DLW RGY VT  + +GADFL+Y D+P+R HA A ++V                        +E   + + +F R    V K  + ACV     +   D    S D+G   VA 
Sbjct:  113 VFRDLWERGYVVTFGSKFGADFLIYKDDPKRAHAVALIVVKGF--------------------EEEFARLDVVSFCRVAKMVKKKLMFACVQPSDADKNDDEKGDSKDSGSTEVAA 208
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BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Match: A0A4V1J4I7_9FUNG (tRNA-intron lyase n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4V1J4I7_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 3.350e-5
Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 2 
Query:  419 QNYSTSNPATPLLESAQAAVFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLVLSSAAPRKDPVDL 634
            +++S + P TPL E+ +  +FEDLWRRGY++T    +G +FLVY  +P+  H+     +L SA    +PV L
Sbjct:  100 EDFSWNYPTTPL-ETMRFRLFEDLWRRGYYLTPGIKFGGEFLVYLGDPQTHHSRFITTLLESAEQTINPVQL 170
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BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Match: A0A6A3MV82_9STRA (tRNA-intron lyase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MV82_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 5.520e-5
Identity = 34/95 (35.79%), Postives = 45/95 (47.37%), Query Frame = 2 
Query:  464 AQAAVFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLVLSSAAPRKDPVDLTTSAAAEPSRSDEIHPISIAAFVRAQTAVAKHAVLACV 748
            AQ  VF DLW RGY VT  + +GADFL+Y D P+  HA + V+V       KD               +E   + + +F R    V K  + ACV
Sbjct:  125 AQLRVFRDLWERGYVVTFGSKFGADFLIYKDNPKHAHAVSLVVV-------KD-------------YEEEFARVDVVSFCRVAKMVKKQLLFACV 199
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A0D6EJ02_SPOSA5.720e-740.59tRNA-intron lyase (Fragment) n=1 Tax=Sporidiobolus... [more]
A0A5C5FU61_9BASI1.190e-649.25tRNA-intron lyase n=1 Tax=Rhodotorula diobovata Ta... [more]
G4ZGP5_PHYSP8.420e-631.34tRNA-intron lyase n=1 Tax=Phytophthora sojae (stra... [more]
A0A125PJ59_9BASI1.450e-537.11tRNA-splicing endonuclease subunit Sen34 n=2 Tax=u... [more]
M4B4X1_HYAAE1.640e-557.50tRNA-intron lyase n=1 Tax=Hyaloperonospora arabido... [more]
W2GQM7_PHYPR2.160e-532.52tRNA-intron lyase n=7 Tax=Phytophthora TaxID=4783 ... [more]
A0A2P4XTR3_9STRA2.500e-531.90tRNA-intron lyase n=1 Tax=Phytophthora palmivora v... [more]
A0A4V1J4I7_9FUNG3.350e-540.28tRNA-intron lyase n=1 Tax=Dimargaris cristalligena... [more]
A0A6A3MV82_9STRA5.520e-535.79tRNA-intron lyase n=2 Tax=Phytophthora TaxID=4783 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1250contigP-wetherbeei_contig1250:1637..3363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4792.ETI45198
PFAMstRNA_int_endo
Model size1396
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.66e-06
EggNOG OGsCOG1676@1|root,KOG4133@2759|Eukaryota,3QI5E@4776|Peronosporales
Ec32 ortholog descriptiontRNA endonuclease-like domain
Ec32 orthologEc-27_003060.1
DescriptiontRNA intron endonuclease, catalytic C-terminal domain
Cds size1161
COG categoryJ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185950.7850819-UTR-P-wetherbeei_contig1250:1636..18021683185950.7850819-UTR-P-wetherbeei_contig1250:1636..1802Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1250 1637..1802 +
1683185950.8224664-UTR-P-wetherbeei_contig1250:3294..33631683185950.8224664-UTR-P-wetherbeei_contig1250:3294..3363Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1250 3295..3363 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185950.8050597-CDS-P-wetherbeei_contig1250:1802..21901683185950.8050597-CDS-P-wetherbeei_contig1250:1802..2190Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1250 1803..2190 +
1683185950.8146725-CDS-P-wetherbeei_contig1250:2521..32941683185950.8146725-CDS-P-wetherbeei_contig1250:2521..3294Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1250 2522..3294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1250.2.1prot_P-wetherbeei_contig1250.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1250 1803..3294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1250.2.1

>prot_P-wetherbeei_contig1250.2.1 ID=prot_P-wetherbeei_contig1250.2.1|Name=mRNA_P-wetherbeei_contig1250.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=387bp
MPRRQTVFRFPDVCALHFVFFRPPLRHANRPSRNDAPKSNPPYVIMPEQA
KLLLKEKLATIFVAPASSAQHPAAAASYLSSLTAQNYSTSNPATPLLESA
QAAVFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLVLSSAAPR
KDPVDLTTSAAAEPSRSDEIHPISIAAFVRAQTAVAKHAVLACVTLGLKE
NGGDGHASSDAGEFYVACSPPLADTRKGPSERDPGEASLAVFEERSTVAA
VGWINATAAKDVTTSDVGRKGASTELEDCSSCDLTTSQVDRDDALHEAPG
QSTPASAALLLAADATAARRSPSEGVAGGGGADAGGDLLLLPSYGGQMVE
ETSFAFVADLPARVRYLTLDFAGAGSRPAALARKQK*
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mRNA from alignment at P-wetherbeei_contig1250:1637..3363+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1250.2.1 ID=mRNA_P-wetherbeei_contig1250.2.1|Name=mRNA_P-wetherbeei_contig1250.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1727bp|location=Sequence derived from alignment at P-wetherbeei_contig1250:1637..3363+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCGGACGGTTCGTCGTTTGGGATGCGGCCACCGCTGAATGGCTTTCAA
AGGAGCTTCGCATCATCACGAACGCCGTCGGCGTGAGGTACGCGCACCCC
ATACCTCGATCATCACCTTCATTCTCCGGTTGATTTCTTTTGTATTGACT
CTTTTCACTCTGGCGCATGCCAAGAAGACAGACTGTCTTTCGGTTCCCGG
ACGTTTGTGCCCTTCATTTCGTCTTCTTCCGGCCGCCGCTTCGCCACGCA
AACAGGCCCTCTCGCAATGACGCGCCGAAGAGCAACCCGCCATATGTTAT
CATGCCGGAGCAGGCAAAACTTCTTTTAAAGGAAAAGCTGGCCACCATCT
TTGTTGCGCCTGCGTCCTCTGCGCAGCACCCCGCTGCTGCCGCGAGCTAT
CTGAGTTCTTTGACCGCCCAGAACTATTCGACGTCCAACCCCGCAACTCC
TCTGCTAGAGAGCGCACAAGCCGCTGTTTTTGAGGACCTGTGGCGTCGGG
GATACTGGGTCACGGGTGCTGCGGGATACGGCGCTGACTTTCTGGTGTAC
GCAGGTGATCTTCGGAAGACTGCAGTCGCGCTCTGCTGGCGTTGCAGGCC
GTGTCGATGGTCCTCATGTTCTTGCGGAACGTGTTGGTCGCAATGAGGCA
ACTCTTGGTTTAAAGGCATTCTCAAGAAGGCATCTCAGCGACTGACAGAT
TGCGCTGCTGAGAGCGTTTCTGGAACAGGCCTTTTGTTTTAATGGAAGGC
AGGACAACATAGGTTGAAACTGCTGTGCTTTGCCCTTCGGTGAACTCATG
CTGCCTGACATAACAAACGCATCAGTGGGTTCTGTAACCACTTTTCTCAT
TACCTTTCGCCTCGCATCACTTTCTCGCCTTGCAGATGAGCCTCGGCGAT
GCCATGCATTTGCTGCGGTGTTGGTTCTTTCGTCCGCTGCACCGAGAAAG
GATCCGGTCGATCTGACGACGTCGGCAGCAGCAGAACCCTCAAGGAGCGA
CGAGATTCACCCCATCAGCATCGCCGCCTTTGTGAGGGCGCAGACGGCCG
TCGCCAAGCATGCTGTATTGGCTTGCGTCACTCTTGGTTTAAAAGAGAAC
GGCGGTGACGGCCACGCCAGCAGCGATGCCGGAGAATTCTACGTTGCATG
TTCGCCCCCGCTCGCAGATACAAGGAAGGGCCCTTCTGAACGGGATCCAG
GAGAAGCATCACTAGCCGTTTTCGAAGAGAGATCGACCGTTGCCGCTGTA
GGATGGATCAATGCGACGGCGGCGAAAGACGTAACGACGTCGGATGTGGG
GCGGAAAGGTGCCAGCACCGAGCTTGAGGATTGCAGCAGCTGCGACCTGA
CAACATCACAAGTCGATCGTGACGACGCGCTCCACGAAGCGCCCGGGCAG
TCGACGCCGGCGTCAGCCGCACTTCTGCTTGCGGCTGATGCCACTGCAGC
GCGACGCTCTCCATCCGAAGGGGTTGCGGGTGGCGGAGGCGCTGATGCGG
GCGGCGACCTGTTGCTGCTTCCATCGTATGGAGGTCAAATGGTAGAAGAA
ACGTCGTTTGCATTCGTGGCGGACCTGCCGGCTCGTGTGCGCTACCTGAC
ACTGGACTTTGCCGGAGCAGGGTCTAGGCCCGCCGCTCTTGCGAGAAAGC
AAAAATGAACGCGTGCGCAGCTCGCATTCCTTATGCATCAAGCGCTTTAG
TTTGCAAAAGTAAGAATCTCTCGTTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1250:1637..3363+

>mRNA_P-wetherbeei_contig1250.2.1 ID=mRNA_P-wetherbeei_contig1250.2.1|Name=mRNA_P-wetherbeei_contig1250.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1161bp|location=Sequence derived from alignment at P-wetherbeei_contig1250:1637..3363+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAAGAAGACAGACTGTCTTTCGGTTCCCGGACGTTTGTGCCCTTCA
TTTCGTCTTCTTCCGGCCGCCGCTTCGCCACGCAAACAGGCCCTCTCGCA
ATGACGCGCCGAAGAGCAACCCGCCATATGTTATCATGCCGGAGCAGGCA
AAACTTCTTTTAAAGGAAAAGCTGGCCACCATCTTTGTTGCGCCTGCGTC
CTCTGCGCAGCACCCCGCTGCTGCCGCGAGCTATCTGAGTTCTTTGACCG
CCCAGAACTATTCGACGTCCAACCCCGCAACTCCTCTGCTAGAGAGCGCA
CAAGCCGCTGTTTTTGAGGACCTGTGGCGTCGGGGATACTGGGTCACGGG
TGCTGCGGGATACGGCGCTGACTTTCTGGTGTACGCAGATGAGCCTCGGC
GATGCCATGCATTTGCTGCGGTGTTGGTTCTTTCGTCCGCTGCACCGAGA
AAGGATCCGGTCGATCTGACGACGTCGGCAGCAGCAGAACCCTCAAGGAG
CGACGAGATTCACCCCATCAGCATCGCCGCCTTTGTGAGGGCGCAGACGG
CCGTCGCCAAGCATGCTGTATTGGCTTGCGTCACTCTTGGTTTAAAAGAG
AACGGCGGTGACGGCCACGCCAGCAGCGATGCCGGAGAATTCTACGTTGC
ATGTTCGCCCCCGCTCGCAGATACAAGGAAGGGCCCTTCTGAACGGGATC
CAGGAGAAGCATCACTAGCCGTTTTCGAAGAGAGATCGACCGTTGCCGCT
GTAGGATGGATCAATGCGACGGCGGCGAAAGACGTAACGACGTCGGATGT
GGGGCGGAAAGGTGCCAGCACCGAGCTTGAGGATTGCAGCAGCTGCGACC
TGACAACATCACAAGTCGATCGTGACGACGCGCTCCACGAAGCGCCCGGG
CAGTCGACGCCGGCGTCAGCCGCACTTCTGCTTGCGGCTGATGCCACTGC
AGCGCGACGCTCTCCATCCGAAGGGGTTGCGGGTGGCGGAGGCGCTGATG
CGGGCGGCGACCTGTTGCTGCTTCCATCGTATGGAGGTCAAATGGTAGAA
GAAACGTCGTTTGCATTCGTGGCGGACCTGCCGGCTCGTGTGCGCTACCT
GACACTGGACTTTGCCGGAGCAGGGTCTAGGCCCGCCGCTCTTGCGAGAA
AGCAAAAATGA
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