prot_P-wetherbeei_contig1250.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig1250.2.1
Unique Nameprot_P-wetherbeei_contig1250.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length387
Homology
BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Match: A0A0D6EJ02_SPOSA (tRNA-intron lyase (Fragment) n=1 Tax=Sporidiobolus salmonicolor TaxID=5005 RepID=A0A0D6EJ02_SPOSA)

HSP 1 Score: 62.4 bits (150), Expect = 4.000e-7
Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 0
Query:   60 TIFVAPASSAQ---HPAAAA-SYLSSLTAQNYSTSNPATPLLESAQAAVFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLVLSSAAPRKDPVDL 156
            TI + P+SS+    HP+++A SY +   AQ     N  T  L+ A+  VFEDLWR+GY++ G   +G DFLVY  +P R H+   + VLS+      P+DL
Sbjct:  204 TILIDPSSSSYAWYHPSSSAVSYPTIEAAQQAGVWNYPTNELQEARCRVFEDLWRKGYYMGGGLRFGGDFLVYPGDPLRYHSHFTLTVLSTPLTAIMPLDL 304          
BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Match: A0A5C5FU61_9BASI (tRNA-intron lyase n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5FU61_9BASI)

HSP 1 Score: 61.6 bits (148), Expect = 8.220e-7
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 0
Query:   90 SNPATPLLESAQAAVFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLVLSSAAPRKDPVDL 156
            S P TPL E A+  VFEDLWRRGY++ G   +G DFLVY  +P R H+   + VLS+ +    P+DL
Sbjct:  272 SYPQTPLQE-ARCRVFEDLWRRGYYMGGGLRFGGDFLVYPGDPLRYHSHFTLTVLSTPSTSLMPLDL 337          
BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Match: G4ZGP5_PHYSP (tRNA-intron lyase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZGP5_PHYSP)

HSP 1 Score: 57.8 bits (138), Expect = 6.320e-6
Identity = 42/134 (31.34%), Postives = 61/134 (45.52%), Query Frame = 0
Query:  104 VFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLVLSSAAPRKDPVDLTTSAAAEPSRSDEIHPISIAAFVRAQTAVAKHAVLACVTLGLKENGGD----GHASSDAGEFYVACSPPLADTRKGPSERD 233
            VF DLW RGY VT  + +GADFLVY D+P++ HA A V+V       KD               +E   + + +F R    V K  + ACV    ++  GD    G  S      Y++ +  L  +R+  S  +
Sbjct:  127 VFRDLWERGYVVTFGSKFGADFLVYKDDPKKTHAVALVVV-------KD-------------YEEEFARVDLVSFCRVAKMVKKKLLFACVRTNGEDKKGDEKKDGSGSEAQSVVYISLTHALLVSRQEASAEE 240          
BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Match: A0A125PJ59_9BASI (tRNA-splicing endonuclease subunit Sen34 n=2 Tax=unclassified Rhodotorula TaxID=2640191 RepID=A0A125PJ59_9BASI)

HSP 1 Score: 58.2 bits (139), Expect = 1.030e-5
Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 0
Query:   97 LESAQAAVFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLVLSSAAPRKDPVDLTTSAAAEPSRSDEIHPISIAAFVRAQTAVAKHAVLAC 193
            L+ A+  VFEDLWRRG+++ G   +G DFLVY  +P R H+   + VLS+          TT+          I P+ + A+ R  TAV K  +L C
Sbjct:  261 LQEARCRVFEDLWRRGFYMGGGMRFGGDFLVYPGDPLRYHSHFTLTVLSTP---------TTT----------IMPLDLVAYGRLATAVKKAHLLGC 338          
BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Match: M4B4X1_HYAAE (tRNA-intron lyase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B4X1_HYAAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.310e-5
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 0
Query:  104 VFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLV 143
            VF DLW RGY VT  + +GADFL+Y D+P+R HA A ++V
Sbjct:   22 VFRDLWERGYVVTFGSKFGADFLIYKDDPKRAHAEALIVV 61          
BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Match: W2GQM7_PHYPR (tRNA-intron lyase n=7 Tax=Phytophthora TaxID=4783 RepID=W2GQM7_PHYPR)

HSP 1 Score: 56.6 bits (135), Expect = 1.630e-5
Identity = 40/123 (32.52%), Postives = 53/123 (43.09%), Query Frame = 0
Query:  104 VFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLVLSSAAPRKDPVDLTTSAAAEPSRSDEIHPISIAAFVRAQTAVAKHAVLACVTLG--LKENGG-----DGHASSDAGEFYVACS 219
            VF DLW +GY VT  + +GADFL+Y D P+R HA A ++V                        +E   + + +F R    V K  V ACV      K  GG     +G  S  AG+  V  S
Sbjct:  128 VFRDLWEKGYIVTFGSKFGADFLIYKDNPKRAHAVALIVVKGY--------------------EEEFSRVDVVSFCRVAKMVKKQLVFACVRASEEYKSGGGKMDDTEGSNSEVAGDSVVYVS 230          
BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Match: A0A2P4XTR3_9STRA (tRNA-intron lyase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XTR3_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.890e-5
Identity = 37/116 (31.90%), Postives = 51/116 (43.97%), Query Frame = 0
Query:  104 VFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLVLSSAAPRKDPVDLTTSAAAEPSRSDEIHPISIAAFVRAQTAVAKHAVLACVTLGLKENGGDGHASS-DAGEFYVAC 218
            VF DLW RGY VT  + +GADFL+Y D+P+R HA A ++V                        +E   + + +F R    V K  + ACV     +   D    S D+G   VA 
Sbjct:  113 VFRDLWERGYVVTFGSKFGADFLIYKDDPKRAHAVALIVVKGF--------------------EEEFARLDVVSFCRVAKMVKKKLMFACVQPSDADKNDDEKGDSKDSGSTEVAA 208          
BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Match: A0A4V1J4I7_9FUNG (tRNA-intron lyase n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4V1J4I7_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 2.570e-5
Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 0
Query:   85 QNYSTSNPATPLLESAQAAVFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLVLSSAAPRKDPVDL 156
            +++S + P TPL E+ +  +FEDLWRRGY++T    +G +FLVY  +P+  H+     +L SA    +PV L
Sbjct:  100 EDFSWNYPTTPL-ETMRFRLFEDLWRRGYYLTPGIKFGGEFLVYLGDPQTHHSRFITTLLESAEQTINPVQL 170          
BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Match: A0A6A3MV82_9STRA (tRNA-intron lyase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MV82_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.150e-5
Identity = 34/95 (35.79%), Postives = 45/95 (47.37%), Query Frame = 0
Query:  100 AQAAVFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLVLSSAAPRKDPVDLTTSAAAEPSRSDEIHPISIAAFVRAQTAVAKHAVLACV 194
            AQ  VF DLW RGY VT  + +GADFL+Y D P+  HA + V+V       KD               +E   + + +F R    V K  + ACV
Sbjct:  125 AQLRVFRDLWERGYVVTFGSKFGADFLIYKDNPKHAHAVSLVVV-------KD-------------YEEEFARVDVVSFCRVAKMVKKQLLFACV 199          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1250.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A0D6EJ02_SPOSA4.000e-740.59tRNA-intron lyase (Fragment) n=1 Tax=Sporidiobolus... [more]
A0A5C5FU61_9BASI8.220e-749.25tRNA-intron lyase n=1 Tax=Rhodotorula diobovata Ta... [more]
G4ZGP5_PHYSP6.320e-631.34tRNA-intron lyase n=1 Tax=Phytophthora sojae (stra... [more]
A0A125PJ59_9BASI1.030e-537.11tRNA-splicing endonuclease subunit Sen34 n=2 Tax=u... [more]
M4B4X1_HYAAE1.310e-557.50tRNA-intron lyase n=1 Tax=Hyaloperonospora arabido... [more]
W2GQM7_PHYPR1.630e-532.52tRNA-intron lyase n=7 Tax=Phytophthora TaxID=4783 ... [more]
A0A2P4XTR3_9STRA1.890e-531.90tRNA-intron lyase n=1 Tax=Phytophthora palmivora v... [more]
A0A4V1J4I7_9FUNG2.570e-540.28tRNA-intron lyase n=1 Tax=Dimargaris cristalligena... [more]
A0A6A3MV82_9STRA4.150e-535.79tRNA-intron lyase n=2 Tax=Phytophthora TaxID=4783 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 102..194
e-value: 5.8E-11
score: 42.3
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 99..201
e-value: 1.5E-14
score: 55.7
NoneNo IPR availablePANTHERPTHR13070TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN34-RELATEDcoord: 98..147
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 103..195

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1250contigP-wetherbeei_contig1250:1803..3294 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1250.2.1mRNA_P-wetherbeei_contig1250.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig1250 1637..3363 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig1250.2.1 ID=prot_P-wetherbeei_contig1250.2.1|Name=mRNA_P-wetherbeei_contig1250.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=387bp
MPRRQTVFRFPDVCALHFVFFRPPLRHANRPSRNDAPKSNPPYVIMPEQA
KLLLKEKLATIFVAPASSAQHPAAAASYLSSLTAQNYSTSNPATPLLESA
QAAVFEDLWRRGYWVTGAAGYGADFLVYADEPRRCHAFAAVLVLSSAAPR
KDPVDLTTSAAAEPSRSDEIHPISIAAFVRAQTAVAKHAVLACVTLGLKE
NGGDGHASSDAGEFYVACSPPLADTRKGPSERDPGEASLAVFEERSTVAA
VGWINATAAKDVTTSDVGRKGASTELEDCSSCDLTTSQVDRDDALHEAPG
QSTPASAALLLAADATAARRSPSEGVAGGGGADAGGDLLLLPSYGGQMVE
ETSFAFVADLPARVRYLTLDFAGAGSRPAALARKQK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006677tRNA_intron_Endonuc_cat-like
IPR011856tRNA_endonuc-like_dom_sf
IPR036167tRNA_intron_Endo_cat-like_sf