mRNA_P-wetherbeei_contig12484.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12484.1.1
Unique NamemRNA_P-wetherbeei_contig12484.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12484.1.1 vs. uniprot
Match: A0A836CDC0_9STRA (ABC transporter transmembrane region 2-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDC0_9STRA)

HSP 1 Score: 112 bits (280), Expect = 4.700e-27
Identity = 59/83 (71.08%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:    1 HLPLYVCVQFSEYLGSIVNYAAVGGAILWLSKAEDASQAEISSLVARGSYSCLYLINAFSQGLDAAAAAAAASGSAGRVVELL 249
            HLPLY CVQF +Y+GSIVNYAAVG +I +L+KA  AS+AEISSL+ARGSYSCLY+INAFS GLDA+A+      SAGRV+ELL
Sbjct:  401 HLPLYACVQFFDYVGSIVNYAAVGISIFYLTKAHAASEAEISSLLARGSYSCLYIINAFSMGLDASASLTVVRASAGRVMELL 483
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BLAST of mRNA_P-wetherbeei_contig12484.1.1 vs. uniprot
Match: D7FQX4_ECTSI (ATP-binding cassette, sub-family D, member 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX4_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.390e-24
Identity = 57/83 (68.67%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:    1 HLPLYVCVQFSEYLGSIVNYAAVGGAILWLSKAEDASQAEISSLVARGSYSCLYLINAFSQGLDAAAAAAAASGSAGRVVELL 249
            H+PLY+  QF +YLGSIVNYAAVGGAIL+LSKAE   +AEI++LVARGS+SCLYLI+AFS+ L A+ AA+   GSA RV ELL
Sbjct:  389 HVPLYLFTQFFDYLGSIVNYAAVGGAILYLSKAEGMGEAEIAALVARGSFSCLYLIDAFSKALRASEAASRMGGSARRVAELL 471
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BLAST of mRNA_P-wetherbeei_contig12484.1.1 vs. uniprot
Match: A0A6H5KC31_9PHAE (ABC transporter domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC31_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 6.040e-24
Identity = 57/83 (68.67%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:    1 HLPLYVCVQFSEYLGSIVNYAAVGGAILWLSKAEDASQAEISSLVARGSYSCLYLINAFSQGLDAAAAAAAASGSAGRVVELL 249
            H+PLY+  QF +YLGSIVNYAAVGGAIL+LSKAE   +AEI++LVARGS+SCLYLI+AFS+ L A+ AA+   GSA RV ELL
Sbjct:   92 HVPLYLFTQFFDYLGSIVNYAAVGGAILYLSKAEGMGEAEIAALVARGSFSCLYLIDAFSKVLRASEAASRMGGSARRVAELL 174
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12484.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CDC0_9STRA4.700e-2771.08ABC transporter transmembrane region 2-domain-cont... [more]
D7FQX4_ECTSI2.390e-2468.67ATP-binding cassette, sub-family D, member 4 n=1 T... [more]
A0A6H5KC31_9PHAE6.040e-2468.67ABC transporter domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12484contigP-wetherbeei_contig12484:1705..1953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQX4
Preferred nameABCD2
PFAMsABC_membrane_2,ABC_tran
Model size249
Max annot lvl2759|Eukaryota
KEGG koko:K05675,ko:K05676,ko:K05677,ko:K05678,ko:K15628
KEGG TC3.A.1.203,3.A.1.203.1,3.A.1.203.2,3.A.1.203.3,3.A.1.203.6,3.A.1.203.7
KEGG Pathwayko02010,ko04146,map02010,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0000038,GO:0000166,GO:0001676,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005324,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006996,GO:0007031,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009605,GO:0009607,GO:0009617,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010565,GO:0010876,GO:0015399,GO:0015405,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0015910,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016054,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0019216,GO:0019217,GO:0019222,GO:0019395,GO:0019752,GO:0019899,GO:0022804,GO:0022857,GO:0030258,GO:0030554,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031903,GO:0031998,GO:0032000,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033036,GO:0033540,GO:0033559,GO:0034220,GO:0034440,GO:0035639,GO:0036094,GO:0036109,GO:0042579,GO:0042623,GO:0042626,GO:0042758,GO:0042760,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043492,GO:0043574,GO:0043651,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045834,GO:0045923,GO:0046320,GO:0046321,GO:0046395,GO:0046907,GO:0046942,GO:0046983,GO:0048471,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055085,GO:0055114,GO:0062012,GO:0062013,GO:0065007,GO:0071702,GO:0071704,GO:0071840,GO:0072329,GO:0080090,GO:0097159,GO:0097367,GO:0098588,GO:0098656,GO:0098805,GO:1901265,GO:1901363,GO:1901575,GO:1902001,GO:1903825,GO:1905039
Exons1
Evalue3.92e-25
EggNOG OGsCOG4178@1|root,KOG0060@2759|Eukaryota,KOG0064@2759|Eukaryota
Ec32 ortholog descriptionAAA ATPase domain
Ec32 orthologEc-02_003270.1
Descriptionlong-chain fatty acid transporter activity
Cds size249
COG categoryGO
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185950.1735444-CDS-P-wetherbeei_contig12484:1704..19531683185950.1735444-CDS-P-wetherbeei_contig12484:1704..1953Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12484 1705..1953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12484.1.1prot_P-wetherbeei_contig12484.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12484 1705..1953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12484.1.1

>prot_P-wetherbeei_contig12484.1.1 ID=prot_P-wetherbeei_contig12484.1.1|Name=mRNA_P-wetherbeei_contig12484.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
HLPLYVCVQFSEYLGSIVNYAAVGGAILWLSKAEDASQAEISSLVARGSY
SCLYLINAFSQGLDAAAAAAAASGSAGRVVELL
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mRNA from alignment at P-wetherbeei_contig12484:1705..1953-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12484.1.1 ID=mRNA_P-wetherbeei_contig12484.1.1|Name=mRNA_P-wetherbeei_contig12484.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig12484:1705..1953- (Phaeothamnion wetherbeei SAG_119_79)
CACCTGCCGCTGTACGTCTGCGTACAGTTCTCGGAGTACCTGGGCTCCAT
CGTGAACTACGCAGCGGTCGGCGGCGCCATATTGTGGCTGTCTAAGGCTG
AGGACGCCAGCCAGGCCGAAATCTCGTCGCTCGTGGCGCGCGGATCCTAC
AGCTGCCTCTACCTCATCAACGCCTTCAGCCAGGGACTCGACGCCGCGGC
GGCGGCCGCCGCAGCCAGCGGGAGTGCGGGCCGCGTCGTTGAGCTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12484:1705..1953-

>mRNA_P-wetherbeei_contig12484.1.1 ID=mRNA_P-wetherbeei_contig12484.1.1|Name=mRNA_P-wetherbeei_contig12484.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig12484:1705..1953- (Phaeothamnion wetherbeei SAG_119_79)
CACCTGCCGCTGTACGTCTGCGTACAGTTCTCGGAGTACCTGGGCTCCAT
CGTGAACTACGCAGCGGTCGGCGGCGCCATATTGTGGCTGTCTAAGGCTG
AGGACGCCAGCCAGGCCGAAATCTCGTCGCTCGTGGCGCGCGGATCCTAC
AGCTGCCTCTACCTCATCAACGCCTTCAGCCAGGGACTCGACGCCGCGGC
GGCGGCCGCCGCAGCCAGCGGGAGTGCGGGCCGCGTCGTTGAGCTGCTG
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