mRNA_P-wetherbeei_contig55214.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55214.1.1
Unique NamemRNA_P-wetherbeei_contig55214.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55214.1.1 vs. uniprot
Match: A0A293N8I4_9GAMM (Acetyl-CoA carboxylase biotin carboxyl carrier protein subunit n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A293N8I4_9GAMM)

HSP 1 Score: 56.2 bits (134), Expect = 7.110e-9
Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = 1
Query:    1 MARKDVRAEVAGTVISILSKAGDSLAEGDTLALIEAMKMEIPVAAP 138
            MA++DV +EV G V  +L  AGDS+AEG+ + ++E+MKMEIPV AP
Sbjct:    1 MAKQDVESEVTGNVWKVLKSAGDSVAEGEVIMILESMKMEIPVEAP 46          
BLAST of mRNA_P-wetherbeei_contig55214.1.1 vs. uniprot
Match: A0A1G8F871_9NOCA (Biotin-requiring enzyme n=1 Tax=Rhodococcus triatomae TaxID=300028 RepID=A0A1G8F871_9NOCA)

HSP 1 Score: 54.7 bits (130), Expect = 2.740e-8
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1
Query:   10 KDVRAEVAGTVISILSKAGDSLAEGDTLALIEAMKMEIPVAA 135
            +DVRAE+  TV  I+  AGD +AEGDTL ++E+MKMEIPV A
Sbjct:    3 EDVRAEMVSTVFQIVVSAGDEVAEGDTLVILESMKMEIPVVA 44          
BLAST of mRNA_P-wetherbeei_contig55214.1.1 vs. uniprot
Match: A0A850DGJ6_9MYCO (Biotin/lipoyl-binding carrier protein n=1 Tax=Mycobacteriaceae bacterium TaxID=2448780 RepID=A0A850DGJ6_9MYCO)

HSP 1 Score: 54.7 bits (130), Expect = 2.740e-8
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 1
Query:   10 KDVRAEVAGTVISILSKAGDSLAEGDTLALIEAMKMEIPVAA 135
            +DVRAE+  TV  +++K GDS+ EGDTL ++E+MKMEIPV A
Sbjct:    3 EDVRAEMVSTVFEVVAKPGDSVNEGDTLVILESMKMEIPVVA 44          
BLAST of mRNA_P-wetherbeei_contig55214.1.1 vs. uniprot
Match: A0A1F3ZSR9_9PROT (Acetyl-CoA carboxylase biotin carboxyl carrier protein subunit n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F3ZSR9_9PROT)

HSP 1 Score: 54.7 bits (130), Expect = 2.880e-8
Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 MARKDVRAEVAGTVISILSKAGDSLAEGDTLALIEAMKMEIPV 129
            MAR +V++E+ GTV  ++SK GD +  GDTLA++E+MKMEIPV
Sbjct:    1 MARIEVKSEITGTVWKVISKPGDRVESGDTLAIVESMKMEIPV 43          
BLAST of mRNA_P-wetherbeei_contig55214.1.1 vs. uniprot
Match: UPI002012E20D (acetyl-CoA carboxylase biotin carboxyl carrier protein subunit n=3 Tax=Bradyrhizobium TaxID=374 RepID=UPI002012E20D)

HSP 1 Score: 54.3 bits (129), Expect = 4.820e-8
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1
Query:   16 VRAEVAGTVISILSKAGDSLAEGDTLALIEAMKMEIPVAA 135
            +  EVAG +  +L KAG+S+AEGD +AL+EAMKMEIP+AA
Sbjct:   13 ITTEVAGRICDLLMKAGESVAEGDDIALVEAMKMEIPIAA 52          
BLAST of mRNA_P-wetherbeei_contig55214.1.1 vs. uniprot
Match: A0A845BMX5_9PROT (Biotin/lipoyl-binding carrier protein n=1 Tax=Roseomonas coralli TaxID=2545983 RepID=A0A845BMX5_9PROT)

HSP 1 Score: 53.5 bits (127), Expect = 8.210e-8
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    1 MARKDVRAEVAGTVISILSKAGDSLAEGDTLALIEAMKMEIPVAAP 138
            MA   + AE+  +V  I +K GD LAEGDT+ L+E+MKMEIPVAAP
Sbjct:    1 MAEVKIAAEITASVWQIQAKPGDQLAEGDTVMLLESMKMEIPVAAP 46          
BLAST of mRNA_P-wetherbeei_contig55214.1.1 vs. uniprot
Match: A0A3N5P0V6_9PROT (Biotin/lipoyl-binding carrier protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5P0V6_9PROT)

HSP 1 Score: 52.8 bits (125), Expect = 1.650e-7
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 1
Query:    1 MARKDVRAEVAGTVISILSKAGDSLAEGDTLALIEAMKMEIPVAA 135
            MAR ++++E+ GTV  + S+ GD + EGDTL +IE+MKMEIPV A
Sbjct:    1 MARIEIKSEITGTVWQVKSQPGDKVEEGDTLIVIESMKMEIPVIA 45          
BLAST of mRNA_P-wetherbeei_contig55214.1.1 vs. uniprot
Match: A0A1W9Z037_9MYCO (Lipoyl-binding domain-containing protein n=5 Tax=Mycobacteriaceae TaxID=1762 RepID=A0A1W9Z037_9MYCO)

HSP 1 Score: 52.4 bits (124), Expect = 2.230e-7
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query:   10 KDVRAEVAGTVISILSKAGDSLAEGDTLALIEAMKMEIPV 129
            +DVRAE+  +V+ ++ K GD + EGDTL L+E+MKMEIPV
Sbjct:    3 EDVRAEIVASVLEVVVKKGDQIGEGDTLVLLESMKMEIPV 42          
BLAST of mRNA_P-wetherbeei_contig55214.1.1 vs. uniprot
Match: A0A4Q3KZQ8_9DELT (Biotin/lipoyl-binding carrier protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A4Q3KZQ8_9DELT)

HSP 1 Score: 52.4 bits (124), Expect = 2.340e-7
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1
Query:   13 DVRAEVAGTVISILSKAGDSLAEGDTLALIEAMKMEIPVAA 135
            DVR+E+ G V  +L KAGD +A GDTL ++E+MKMEIP+ A
Sbjct:    4 DVRSEITGNVWKVLVKAGDRVAAGDTLVILESMKMEIPIEA 44          
BLAST of mRNA_P-wetherbeei_contig55214.1.1 vs. uniprot
Match: UPI001B301529 (biotin/lipoyl-binding carrier protein n=1 Tax=Microvirga antarctica TaxID=2819233 RepID=UPI001B301529)

HSP 1 Score: 52.4 bits (124), Expect = 2.340e-7
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1
Query:    1 MARKDVRAEVAGTVISILSKAGDSLAEGDTLALIEAMKMEIPVAA 135
            MA+ DV +E+ G++  IL + G  + EGDTL LIEAMKMEIPVAA
Sbjct:    1 MAKIDVSSEMTGSIWKILVQVGQDVEEGDTLILIEAMKMEIPVAA 45          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55214.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A293N8I4_9GAMM7.110e-956.52Acetyl-CoA carboxylase biotin carboxyl carrier pro... [more]
A0A1G8F871_9NOCA2.740e-861.90Biotin-requiring enzyme n=1 Tax=Rhodococcus triato... [more]
A0A850DGJ6_9MYCO2.740e-859.52Biotin/lipoyl-binding carrier protein n=1 Tax=Myco... [more]
A0A1F3ZSR9_9PROT2.880e-858.14Acetyl-CoA carboxylase biotin carboxyl carrier pro... [more]
UPI002012E20D4.820e-862.50acetyl-CoA carboxylase biotin carboxyl carrier pro... [more]
A0A845BMX5_9PROT8.210e-858.70Biotin/lipoyl-binding carrier protein n=1 Tax=Rose... [more]
A0A3N5P0V6_9PROT1.650e-755.56Biotin/lipoyl-binding carrier protein n=2 Tax=Beta... [more]
A0A1W9Z037_9MYCO2.230e-757.50Lipoyl-binding domain-containing protein n=5 Tax=M... [more]
A0A4Q3KZQ8_9DELT2.340e-758.54Biotin/lipoyl-binding carrier protein n=1 Tax=Delt... [more]
UPI001B3015292.340e-760.00biotin/lipoyl-binding carrier protein n=1 Tax=Micr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55214contigP-wetherbeei_contig55214:309..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog258533.BN977_05021
PFAMsBiotin_lipoyl
Model size216
Max annot lvl201174|Actinobacteria
KEGG rclassRC00040,RC00367
KEGG koko:K02160
KEGG ReactionR00742
KEGG Pathwayko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00082,M00376
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.66e-08
EggNOG OGsCOG1038@1|root,COG1038@2|Bacteria,2GQHZ@201174|Actinobacteria,23AN9@1762|Mycobacteriaceae
DescriptionBiotin-lipoyl like
Cds size216
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186823.5788505-CDS-P-wetherbeei_contig55214:308..5241683186823.5788505-CDS-P-wetherbeei_contig55214:308..524Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55214 309..524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55214.1.1prot_P-wetherbeei_contig55214.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55214 309..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55214.1.1

>prot_P-wetherbeei_contig55214.1.1 ID=prot_P-wetherbeei_contig55214.1.1|Name=mRNA_P-wetherbeei_contig55214.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
MARKDVRAEVAGTVISILSKAGDSLAEGDTLALIEAMKMEIPVAAPSAGT
LVELRIAEGDVVAEDAVLAIIE
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mRNA from alignment at P-wetherbeei_contig55214:309..524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55214.1.1 ID=mRNA_P-wetherbeei_contig55214.1.1|Name=mRNA_P-wetherbeei_contig55214.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig55214:309..524+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCACGCAAGGACGTCCGCGCGGAGGTTGCCGGCACGGTGATCTCTAT CCTGTCGAAGGCCGGCGACAGCCTCGCCGAGGGCGACACGCTGGCGCTGA TCGAGGCGATGAAAATGGAAATTCCGGTCGCCGCGCCGTCCGCCGGCACG CTGGTCGAATTGCGCATCGCCGAAGGCGATGTGGTGGCCGAAGACGCGGT GCTCGCCATCATCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55214:309..524+

>mRNA_P-wetherbeei_contig55214.1.1 ID=mRNA_P-wetherbeei_contig55214.1.1|Name=mRNA_P-wetherbeei_contig55214.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig55214:309..524+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCACGCAAGGACGTCCGCGCGGAGGTTGCCGGCACGGTGATCTCTAT
CCTGTCGAAGGCCGGCGACAGCCTCGCCGAGGGCGACACGCTGGCGCTGA
TCGAGGCGATGAAAATGGAAATTCCGGTCGCCGCGCCGTCCGCCGGCACG
CTGGTCGAATTGCGCATCGCCGAAGGCGATGTGGTGGCCGAAGACGCGGT
GCTCGCCATCATCGAG
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