mRNA_P-wetherbeei_contig55055.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55055.1.1
Unique NamemRNA_P-wetherbeei_contig55055.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55055.1.1 vs. uniprot
Match: A0A7C4TUH2_9HYPH (Hsp20 family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TUH2_9HYPH)

HSP 1 Score: 147 bits (370), Expect = 2.220e-43
Identity = 67/90 (74.44%), Postives = 80/90 (88.89%), Query Frame = 1
Query:    1 MATLDFAPLFRSSIGFDQLPALFSHAVERPETGYPPYNIEKVGEDQYRIVMAVAGFGMDDIEIVQEQNRLSVPGRLKEPNGNTYLHRGIA 270
            MATLDF PLFRS+IGFDQ+P+L SHA++R E+GYPPYNIEKVG+D+YRIVMAVAGF  DDIE+VQ+QNRL+V GR+K+P    YLHRGIA
Sbjct:    1 MATLDFTPLFRSTIGFDQVPSLLSHALQREESGYPPYNIEKVGDDRYRIVMAVAGFAKDDIEVVQDQNRLTVRGRVKQPTDTVYLHRGIA 90          
BLAST of mRNA_P-wetherbeei_contig55055.1.1 vs. uniprot
Match: A0A2W4TL87_9PROT (Heat-shock protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4TL87_9PROT)

HSP 1 Score: 130 bits (328), Expect = 4.760e-37
Identity = 58/90 (64.44%), Postives = 75/90 (83.33%), Query Frame = 1
Query:    1 MATLDFAPLFRSSIGFDQLPALFSHAVERPETGYPPYNIEKVGEDQYRIVMAVAGFGMDDIEIVQEQNRLSVPGRLKEPNGNTYLHRGIA 270
            MATLDF PL+RS++GFD++  + SHA++R E+GYPPYNIEK G+D+YRIVMAVAGF  DDI ++ E+NRL++ G+LKE    TYLHRGIA
Sbjct:    1 MATLDFTPLYRSTVGFDRISVILSHAMQREESGYPPYNIEKCGDDRYRIVMAVAGFSKDDITVIAERNRLTIRGQLKEKPERTYLHRGIA 90          
BLAST of mRNA_P-wetherbeei_contig55055.1.1 vs. uniprot
Match: A0A3S0RG92_HYPSQ (Hsp20 family protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A3S0RG92_HYPSQ)

HSP 1 Score: 127 bits (320), Expect = 6.750e-36
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = 1
Query:    1 MATLDFAPLFRSSIGFDQLPALFSHAVERPETGYPPYNIEKVGEDQYRIVMAVAGFGMDDIEIVQEQNRLSVPGRLKEPNGNTYLHRGIA 270
            MAT DF P+FRSSIGFDQLP L +HA ER   GYPPYNIEK+G D +RIVMAVAGF  DD+EI+Q +NRL V GR K      +LHRG+A
Sbjct:    1 MATFDFTPMFRSSIGFDQLPDLLAHAAEREANGYPPYNIEKIGPDDFRIVMAVAGFARDDLEIIQAENRLIVKGRGKNEEAKNFLHRGLA 90          
BLAST of mRNA_P-wetherbeei_contig55055.1.1 vs. uniprot
Match: A0A2W4KT26_9PROT (Heat-shock protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4KT26_9PROT)

HSP 1 Score: 126 bits (317), Expect = 2.300e-35
Identity = 58/90 (64.44%), Postives = 72/90 (80.00%), Query Frame = 1
Query:    1 MATLDFAPLFRSSIGFDQLPALFSHAVERPETGYPPYNIEKVGEDQYRIVMAVAGFGMDDIEIVQEQNRLSVPGRLKEPNGNTYLHRGIA 270
            MAT D  PLFRS++GFD++  L +HA++R + GYPPYNIEK GEDQYRIVMAVAGF  DDI I+ E+NRL++ G+LKE    TYL+RGIA
Sbjct:    1 MATFDLTPLFRSTVGFDRVQMLLAHAMQREDNGYPPYNIEKCGEDQYRIVMAVAGFSKDDISIIAERNRLTIRGQLKEKPERTYLYRGIA 90          
BLAST of mRNA_P-wetherbeei_contig55055.1.1 vs. uniprot
Match: UPI00045EB32A (Hsp20 family protein n=1 Tax=Hyphomicrobium sp. 802 TaxID=1112272 RepID=UPI00045EB32A)

HSP 1 Score: 123 bits (309), Expect = 3.260e-34
Identity = 57/90 (63.33%), Postives = 69/90 (76.67%), Query Frame = 1
Query:    1 MATLDFAPLFRSSIGFDQLPALFSHAVERPETGYPPYNIEKVGEDQYRIVMAVAGFGMDDIEIVQEQNRLSVPGRLKEPNGNTYLHRGIA 270
            MAT DF P+FRSSIGFDQLP L +HA ER   GYPPYNIEK G D +RIVMAVAGF  DD+EIVQ ++RL + G+ K+    T+L+RG+A
Sbjct:    1 MATFDFTPMFRSSIGFDQLPDLLAHAAEREANGYPPYNIEKSGPDDFRIVMAVAGFARDDLEIVQAESRLIIKGQAKKEEAKTFLYRGLA 90          
BLAST of mRNA_P-wetherbeei_contig55055.1.1 vs. uniprot
Match: F8J9P9_HYPSM (Small heat shock protein n=1 Tax=Hyphomicrobium sp. (strain MC1) TaxID=717785 RepID=F8J9P9_HYPSM)

HSP 1 Score: 118 bits (296), Expect = 3.060e-32
Identity = 53/90 (58.89%), Postives = 70/90 (77.78%), Query Frame = 1
Query:    1 MATLDFAPLFRSSIGFDQLPALFSHAVERPETGYPPYNIEKVGEDQYRIVMAVAGFGMDDIEIVQEQNRLSVPGRLKEPNGNTYLHRGIA 270
            MAT DF P+FRSSIGF+Q+P L + A++R   GYPPYNIEK G D++RIVMAV+GF  DD+EIVQ +NRL++ GR +  +   YL+RG+A
Sbjct:    1 MATFDFTPMFRSSIGFEQIPDLLAQALQRQGDGYPPYNIEKAGADEFRIVMAVSGFSADDLEIVQAENRLTIKGRAENDDQKIYLYRGLA 90          
BLAST of mRNA_P-wetherbeei_contig55055.1.1 vs. uniprot
Match: A0A2H6AXB7_9BACT (Small heat shock protein IbpA n=1 Tax=bacterium HR40 TaxID=2035435 RepID=A0A2H6AXB7_9BACT)

HSP 1 Score: 110 bits (274), Expect = 9.510e-29
Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    1 MATLDFAPLFRSSIGFDQLPALFSHAVERPE-TGYPPYNIEKVGEDQYRIVMAVAGFGMDDIEIVQEQNRLSVPGRLKEPNGNTYLHRGIA 270
            M  LD  PL RS+IGFD L  L   A++  E   YPPYNIEK+GE++YRIVMAVAGFG +D+E+V E N +++ GR +EP G TYLHRGIA
Sbjct:    1 MTELDLTPLLRSTIGFDHLSKLLDTALKWDEGASYPPYNIEKLGENRYRIVMAVAGFGPEDLEVVAEPNLVTIRGRRREPEGVTYLHRGIA 91          
BLAST of mRNA_P-wetherbeei_contig55055.1.1 vs. uniprot
Match: UPI00042644E7 (Hsp20 family protein n=1 Tax=Azospirillum halopraeferens TaxID=34010 RepID=UPI00042644E7)

HSP 1 Score: 108 bits (270), Expect = 3.000e-28
Identity = 54/93 (58.06%), Postives = 67/93 (72.04%), Query Frame = 1
Query:    1 MATLDFAPLFRSSIGFDQLPALFSHAVERPETG--YPPYNIEKVGEDQYRIVMAVAGFGMDDIEIVQEQNRLSVPGRLK-EPNGNTYLHRGIA 270
            M + D +PLFRS++GFD+L  L  HA+   E    YPPYNIEK+GED YRI MAVAGFG +DIEI  +QN L+V G+ K EP G  +L+RGIA
Sbjct:    1 MRSYDLSPLFRSTVGFDRLTRLMEHALNADEASASYPPYNIEKLGEDAYRITMAVAGFGPEDIEITAQQNALTVSGKTKKEPEGGQFLYRGIA 93          
BLAST of mRNA_P-wetherbeei_contig55055.1.1 vs. uniprot
Match: A0A3M1J6R4_9PROT (SHSP domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1J6R4_9PROT)

HSP 1 Score: 108 bits (270), Expect = 4.880e-28
Identity = 53/93 (56.99%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    1 MATLDFAPLFRSSIGFDQLPALFSHAVERP--ETGYPPYNIEKVGEDQYRIVMAVAGFGMDDIEIVQEQNRLSVPGRLKEPNGNT-YLHRGIA 270
            M + DF PL+RS++G+D++PAL   A +    +  YPPYNIEK+GED YRIV+A+AGF  DDIEIV E+NRL V G++ EP  +  YLHRGIA
Sbjct:    1 MVSFDFTPLYRSTVGYDRVPALLQAAAKADISDLSYPPYNIEKLGEDDYRIVIALAGFTKDDIEIVSERNRLIVRGKISEPKEDAVYLHRGIA 93          
BLAST of mRNA_P-wetherbeei_contig55055.1.1 vs. uniprot
Match: A0A2D6G1U0_9PROT (Heat-shock protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6G1U0_9PROT)

HSP 1 Score: 105 bits (262), Expect = 5.740e-27
Identity = 53/93 (56.99%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    1 MATLDFAPLFRSSIGFDQLPALFSHAVERPET--GYPPYNIEKVGEDQYRIVMAVAGFGMDDIEIVQEQNRLSVPGRLKEPNGNT-YLHRGIA 270
            M T DF+PLFR S+GFD++  +   A ER E   GYPPYNIE V +D YRI MAVAGFG DD++IV ++N LSV G++ +  G   YLHRGIA
Sbjct:    1 MRTYDFSPLFRYSVGFDRIERMLDTASERAERAPGYPPYNIETVDQDSYRITMAVAGFGEDDLDIVIKENELSVSGKIDQDGGEAKYLHRGIA 93          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55055.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4TUH2_9HYPH2.220e-4374.44Hsp20 family protein n=1 Tax=Hyphomicrobiales bact... [more]
A0A2W4TL87_9PROT4.760e-3764.44Heat-shock protein n=1 Tax=Proteobacteria bacteriu... [more]
A0A3S0RG92_HYPSQ6.750e-3665.56Hsp20 family protein n=1 Tax=Hyphomicrobium sp. Ta... [more]
A0A2W4KT26_9PROT2.300e-3564.44Heat-shock protein n=1 Tax=Proteobacteria bacteriu... [more]
UPI00045EB32A3.260e-3463.33Hsp20 family protein n=1 Tax=Hyphomicrobium sp. 80... [more]
F8J9P9_HYPSM3.060e-3258.89Small heat shock protein n=1 Tax=Hyphomicrobium sp... [more]
A0A2H6AXB7_9BACT9.510e-2959.34Small heat shock protein IbpA n=1 Tax=bacterium HR... [more]
UPI00042644E73.000e-2858.06Hsp20 family protein n=1 Tax=Azospirillum haloprae... [more]
A0A3M1J6R4_9PROT4.880e-2856.99SHSP domain-containing protein n=1 Tax=Alphaproteo... [more]
A0A2D6G1U0_9PROT5.740e-2756.99Heat-shock protein n=1 Tax=Rhodospirillaceae bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55055contigP-wetherbeei_contig55055:258..527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog717785.HYPMC_1694
PFAMsHSP20
Model size270
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K04080
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.02e-33
EggNOG OGsCOG0071@1|root,COG0071@2|Bacteria,1RH2X@1224|Proteobacteria,2U96D@28211|Alphaproteobacteria,3N6YJ@45401|Hyphomicrobiaceae
DescriptionBelongs to the small heat shock protein (HSP20) family
Cds size270
COG categoryO
BRITEko00000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186821.318812-CDS-P-wetherbeei_contig55055:257..5271683186821.318812-CDS-P-wetherbeei_contig55055:257..527Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55055 258..527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55055.1.1prot_P-wetherbeei_contig55055.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55055 258..527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55055.1.1

>prot_P-wetherbeei_contig55055.1.1 ID=prot_P-wetherbeei_contig55055.1.1|Name=mRNA_P-wetherbeei_contig55055.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MATLDFAPLFRSSIGFDQLPALFSHAVERPETGYPPYNIEKVGEDQYRIV
MAVAGFGMDDIEIVQEQNRLSVPGRLKEPNGNTYLHRGIA
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mRNA from alignment at P-wetherbeei_contig55055:258..527+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55055.1.1 ID=mRNA_P-wetherbeei_contig55055.1.1|Name=mRNA_P-wetherbeei_contig55055.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig55055:258..527+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACACTCGATTTCGCACCCCTGTTCCGGTCGAGCATCGGCTTCGA CCAACTTCCGGCCCTGTTTTCTCACGCCGTGGAGCGTCCGGAAACGGGCT ATCCGCCCTACAACATCGAAAAGGTCGGCGAAGACCAGTACCGCATCGTC ATGGCGGTGGCAGGCTTCGGCATGGACGACATTGAGATCGTCCAGGAGCA GAACCGGCTCTCGGTGCCGGGCAGGCTCAAGGAGCCGAACGGCAACACCT ATCTGCATCGCGGCATCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55055:258..527+

>mRNA_P-wetherbeei_contig55055.1.1 ID=mRNA_P-wetherbeei_contig55055.1.1|Name=mRNA_P-wetherbeei_contig55055.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig55055:258..527+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACACTCGATTTCGCACCCCTGTTCCGGTCGAGCATCGGCTTCGA
CCAACTTCCGGCCCTGTTTTCTCACGCCGTGGAGCGTCCGGAAACGGGCT
ATCCGCCCTACAACATCGAAAAGGTCGGCGAAGACCAGTACCGCATCGTC
ATGGCGGTGGCAGGCTTCGGCATGGACGACATTGAGATCGTCCAGGAGCA
GAACCGGCTCTCGGTGCCGGGCAGGCTCAAGGAGCCGAACGGCAACACCT
ATCTGCATCGCGGCATCGCG
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