mRNA_P-wetherbeei_contig5497.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5497.3.1
Unique NamemRNA_P-wetherbeei_contig5497.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5497.3.1 vs. uniprot
Match: A0A835Z9A8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9A8_9STRA)

HSP 1 Score: 129 bits (325), Expect = 4.160e-33
Identity = 67/132 (50.76%), Postives = 82/132 (62.12%), Query Frame = 1
Query:   40 DGGELPPPCVGDFSPVRPREDADVLRRVCHVPVPAGAAVFWDYRTPHANAARNASDRPREVIYTGFLPDTAWNRAYAHQQLDRLLRGIPPDDQWMALSPV-IADAGCENGAASGARGALSEYEWSALGRRLV 432
            DG  +PPPCVGDF+P+RPR DA+VL+RV  +PV AG AVFWD R PHANA RN +   R V+YTGFLP T  NR Y  +QL    R + P DQW  + PV + DA               +YE+S+LGR L 
Sbjct:  261 DGSSVPPPCVGDFTPLRPRGDAEVLKRVVPIPVRAGGAVFWDVRLPHANAQRNGAAAARAVVYTGFLPCTPMNRRYVQKQLHDYRRSVIPQDQW--VGPVKMEDA--------------PDYEFSSLGRCLA 376          
BLAST of mRNA_P-wetherbeei_contig5497.3.1 vs. uniprot
Match: A0A5D6XPF7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPF7_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.520e-30
Identity = 63/131 (48.09%), Postives = 78/131 (59.54%), Query Frame = 1
Query:   55 PPPCVGDFSPVRPREDADVLRRVCHVPVPAGAAVFWDYRTPHANAARNASDRPREVIYTGFLPDTAWNRAYAHQQLDRLLRGIPPDDQWMALSPVIADAGCENGAASGARGALSEYEWSALGRRLVGLSEW 447
            P  C+GDFSP+R  ED DV+ R  HV   AG+A+F+D+R PHAN+ R+A   PREV+YTGFLPD A NRAY  +QL R  R + P D W       ADA              S + +SALG RL+GL  W
Sbjct:  245 PQVCLGDFSPLRMAEDRDVIARFAHVGAAAGSAIFFDWRVPHANSYRHAGAAPREVVYTGFLPDVALNRAYVREQLRRYARRLLPADHWQKGD---ADARVAE--------HFSAHHFSALGSRLIGLYPW 364          
BLAST of mRNA_P-wetherbeei_contig5497.3.1 vs. uniprot
Match: A0A1Z5KEF9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KEF9_FISSO)

HSP 1 Score: 120 bits (300), Expect = 9.980e-30
Identity = 66/143 (46.15%), Postives = 87/143 (60.84%), Query Frame = 1
Query:   28 VATPDGGE---LPPPCVGDFSPVRPREDADVLRRVCHVPVPAGAAVFWDYRTPHANAARNASDRPREVIYTGFLPDTAWNRAYAHQQLDRLLRGI-PPDDQWMALSPVIADAGCENGAASGARGALSEYEWSALGRRLVGLSE 444
            + T  GGE   LP PCVG+++ +RPREDA VL+RV H+PV AG+AV WD R PHANA R+    PR V+YT FLPD A NR YA QQL+ + RG  PP    + ++P       E+         LSE + + L RRL+ + +
Sbjct:  227 LVTRKGGETLALPAPCVGEYTHIRPREDAAVLQRVQHIPVTAGSAVLWDNRIPHANAYRHDGTEPRVVVYTSFLPDVAINRQYARQQLEHIRRGRNPPSSGGLWMNPSETT---ESDVKQSNSSILSEDKLTELQRRLLAIDD 366          
BLAST of mRNA_P-wetherbeei_contig5497.3.1 vs. uniprot
Match: A0A397AI45_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AI45_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.750e-29
Identity = 57/131 (43.51%), Postives = 80/131 (61.07%), Query Frame = 1
Query:   55 PPPCVGDFSPVRPREDADVLRRVCHVPVPAGAAVFWDYRTPHANAARNASDRPREVIYTGFLPDTAWNRAYAHQQLDRLLRGIPPDDQWMALSPVIADAGCENGAASGARGALSEYEWSALGRRLVGLSEW 447
            PP C+GDFSP+R +ED  V+ R  HVP  AG+ + +D+R PHAN+ R+  + PREV+YTGFLP+   NR YA +QL R L  + P D W   +    D   +           S++E++ALGR+L+GL  W
Sbjct:  102 PPVCLGDFSPLRMQEDKAVIARYKHVPADAGSVILFDWRIPHANSYRHVGNIPREVVYTGFLPNVPMNRTYAVEQLRRYLARLLPADHWQKDT---TDKAVDE--------TFSKHEFTALGRKLMGLDPW 221          
BLAST of mRNA_P-wetherbeei_contig5497.3.1 vs. uniprot
Match: A0A7S3HN64_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HN64_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.440e-28
Identity = 57/126 (45.24%), Postives = 70/126 (55.56%), Query Frame = 1
Query:   61 PCVGDFSPVRPREDADVLRRVCHVPVPAGAAVFWDYRTPHANAARNASDRPREVIYTGFLPDTAWNRAYAHQQLDRLLRGIPPDDQWMALSPVIADAGCENGAASGARGALSEYEWSALGRRLVGL 438
            PCVGDF+P+RP ED DVL +  H+P  AG  V WDYR PHANA  N +  PR V+Y G LP    N  YA +QLD+  RG  P DQW   +   A   C              Y +S LGR+L+G+
Sbjct:   92 PCVGDFTPIRPIEDKDVLEKFRHIPCKAGDLVCWDYRIPHANARHNLAPHPRAVVYIGLLPAVPINERYAQRQLDKFRRGEVPSDQWHEST---ATQPCN-------------YAFSELGRKLMGM 201          
BLAST of mRNA_P-wetherbeei_contig5497.3.1 vs. uniprot
Match: W4H058_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H058_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.100e-28
Identity = 57/131 (43.51%), Postives = 80/131 (61.07%), Query Frame = 1
Query:   55 PPPCVGDFSPVRPREDADVLRRVCHVPVPAGAAVFWDYRTPHANAARNASDRPREVIYTGFLPDTAWNRAYAHQQLDRLLRGIPPDDQWMALSPVIADAGCENGAASGARGALSEYEWSALGRRLVGLSEW 447
            PP C+GDFSP+R +ED  V+ R  HVP  AG+ + +D+R PHAN+ R+  + PREV+YTGFLP+   NR YA +QL R L  + P D W   +    D   +           S++E++ALGR+L+GL  W
Sbjct:  222 PPVCLGDFSPLRMQEDKAVIARYKHVPADAGSVILFDWRIPHANSYRHVGNIPREVVYTGFLPNVPMNRTYAVEQLRRYLARLLPADHWQKDT---TDKAVDE--------TFSKHEFTALGRKLMGLDPW 341          
BLAST of mRNA_P-wetherbeei_contig5497.3.1 vs. uniprot
Match: A0A1E7EII6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EII6_9STRA)

HSP 1 Score: 115 bits (289), Expect = 4.000e-28
Identity = 55/135 (40.74%), Postives = 77/135 (57.04%), Query Frame = 1
Query:   52 LPPPCVGDFSPVRPREDADVLRRVCHVPVPAGAAVFWDYRTPHANAARNASDRPREVIYTGFLPDTAWNRAYAHQQLDRLLRGIPPDDQWMALSP---VIADAGCENGAASGARGALSEYEWSALGRRLVGLSEW 447
            +P  CVG+++ +RP+ED DV+ RVCH+PV AG+AVFWD R PH+NA  +    PR V+Y  FLPD   NR Y   QL    +  P  DQW  +S     + D G +             Y +++LGR+L+G+  W
Sbjct:  239 IPAACVGEYTHMRPKEDRDVMDRVCHIPVSAGSAVFWDNRIPHSNAYTHNGTIPRAVVYCSFLPDVELNRCYVQNQLLNYKQNRPVKDQWNHISDNVVTVDDVGDQQ--------KKQHYNFTSLGRKLMGIDTW 365          
BLAST of mRNA_P-wetherbeei_contig5497.3.1 vs. uniprot
Match: A0A662X5D5_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X5D5_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.050e-26
Identity = 57/134 (42.54%), Postives = 79/134 (58.96%), Query Frame = 1
Query:   55 PPPCVGDFSPVRPREDADVLRRVCHVPVPAGAAVFWDYRTPHANAARNASDRPREVIYTGFLPDTAWNRAYAHQQLDRLLRGIPPDDQWMALSP---VIADAGCENGAASGARGALSEYEWSALGRRLVGLSEW 447
            P  C+GDFSP+R +ED +V+ R  HV   AG+ +F+D+R PHAN+ ++    PREV+YTGFLPDT  NRAYA +QL R    + P D W+  +    V+ +              LS + +S LG RL+GL  W
Sbjct:  242 PQVCLGDFSPLRMQEDREVIDRYQHVGCEAGSVIFFDWRIPHANSYKHVGTIPREVVYTGFLPDTPMNRAYASEQLRRYTGRLLPADHWLKDNTDARVVEE--------------LSAHHFSPLGSRLIGLHPW 361          
BLAST of mRNA_P-wetherbeei_contig5497.3.1 vs. uniprot
Match: A0A7S2D5I1_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D5I1_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.150e-26
Identity = 53/94 (56.38%), Postives = 65/94 (69.15%), Query Frame = 1
Query:   40 DGGELPPPCVGDFSPVRPREDADVLRRVCHVPVPAGAAVFWDYRTPHANAARNASDRPREVIYTGFLPDTAWNRAYAHQQLDRLLRGIPPDDQW 321
            +GG+ P  CVG+F+P+RP+EDA VL R+ HVP  AG+ V WD+RTPHANA  N     REV Y G+LPD   NRAYA  QL    +G+ PDDQW
Sbjct:  322 NGGDAP--CVGEFTPIRPKEDARVLARIEHVPCTAGSLVLWDWRTPHANARYNRGACAREVAYLGYLPDVPLNRAYAAAQLRAYQQGMDPDDQW 413          
BLAST of mRNA_P-wetherbeei_contig5497.3.1 vs. uniprot
Match: K8YWA2_NANGC (Phytanoyl-dioxygenase superfamily protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YWA2_NANGC)

HSP 1 Score: 110 bits (275), Expect = 1.620e-26
Identity = 56/126 (44.44%), Postives = 72/126 (57.14%), Query Frame = 1
Query:   61 PCVGDFSPVRPREDADVLRRVCHVPVPAGAAVFWDYRTPHANAARNASDRPREVIYTGFLPDTAWNRAYAHQQLDRLLRGIPPDDQWMALSPVIADAGCENGAASGARGALSEYEWSALGRRLVGL 438
            PCVGDF+P+RP EDA+V+ R   V   AG+ + +D+R PHANA  +    PR+V Y  FLPD   NR YA +Q  R   G+ PDDQW            EN  +    G  S +E+S LGRRL+G 
Sbjct:  138 PCVGDFTPIRPVEDAEVIARFAPVYYQAGSVIAFDWRIPHANATHHVGLEPRQVSYASFLPDVPVNREYARRQAQRFYNGLQPDDQWK-----------ENSDSKEVYGDGSVFEFSDLGRRLLGF 252          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5497.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9A8_9STRA4.160e-3350.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5D6XPF7_9STRA3.520e-3048.09Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1Z5KEF9_FISSO9.980e-3046.15Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A397AI45_9STRA1.750e-2943.51Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
A0A7S3HN64_9STRA1.440e-2845.24Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
W4H058_9STRA2.100e-2843.51Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A1E7EII6_9STRA4.000e-2840.74Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A662X5D5_9STRA1.050e-2642.54Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A7S2D5I1_9STRA1.150e-2656.38Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
K8YWA2_NANGC1.620e-2644.44Phytanoyl-dioxygenase superfamily protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5497contigP-wetherbeei_contig5497:2919..3542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008606913.1
PFAMsDUF1479,PhyH
Model size450
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.76e-29
EggNOG OGsCOG0482@1|root,2QWGK@2759|Eukaryota
Descriptionsulfurtransferase activity
Cds size450
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186819.6644373-CDS-P-wetherbeei_contig5497:2918..31621683186819.6644373-CDS-P-wetherbeei_contig5497:2918..3162Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5497 2919..3162 -
1683186819.6757374-CDS-P-wetherbeei_contig5497:3336..35421683186819.6757374-CDS-P-wetherbeei_contig5497:3336..3542Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5497 3337..3542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5497.3.1prot_P-wetherbeei_contig5497.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5497 2919..3542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5497.3.1

>prot_P-wetherbeei_contig5497.3.1 ID=prot_P-wetherbeei_contig5497.3.1|Name=mRNA_P-wetherbeei_contig5497.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
MYVYLCALQVATPDGGELPPPCVGDFSPVRPREDADVLRRVCHVPVPAGA
AVFWDYRTPHANAARNASDRPREVIYTGFLPDTAWNRAYAHQQLDRLLRG
IPPDDQWMALSPVIADAGCENGAASGARGALSEYEWSALGRRLVGLSEW*
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mRNA from alignment at P-wetherbeei_contig5497:2919..3542-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5497.3.1 ID=mRNA_P-wetherbeei_contig5497.3.1|Name=mRNA_P-wetherbeei_contig5497.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=624bp|location=Sequence derived from alignment at P-wetherbeei_contig5497:2919..3542- (Phaeothamnion wetherbeei SAG_119_79)
ATGTATGTGTATTTATGTGCGTTGCAGGTGGCTACCCCAGACGGCGGGGA GCTGCCGCCGCCTTGCGTCGGCGACTTCTCGCCGGTACGGCCGCGCGAAG ATGCCGACGTCCTGCGCCGTGTCTGCCACGTGCCCGTCCCAGCCGGGGCG GCCGTGTTTTGGGACTATCGAACGCCTCATGCGAACGCCGCCAGGAATGC TTCCGAGTGAGTTTCTCGACAGATTTGTGGGAGGAGCGGACGAAAGATGT CTCTTGCATTCAGTCGACCTCTTTGCTTTACTCTGGTGTAGCGAGGTGGA GATTTTAGGCAGAGCCTAAACAATCTCTCCATTTGCCATCCACTCCCGGG TTCTTTCGTTCTGGGTGCCGCCGGCGGCAGCCGCCCGCGGGAGGTTATTT ACACAGGGTTTCTGCCCGACACGGCCTGGAACCGTGCGTACGCCCACCAA CAGCTGGATCGGCTCCTTCGCGGCATCCCTCCGGACGATCAGTGGATGGC GTTGTCCCCCGTCATTGCCGACGCCGGGTGCGAAAACGGAGCTGCAAGCG GCGCCAGGGGTGCGCTCTCAGAATATGAATGGTCGGCGCTGGGACGTCGC CTCGTCGGGCTCAGTGAGTGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5497:2919..3542-

>mRNA_P-wetherbeei_contig5497.3.1 ID=mRNA_P-wetherbeei_contig5497.3.1|Name=mRNA_P-wetherbeei_contig5497.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig5497:2919..3542- (Phaeothamnion wetherbeei SAG_119_79)
ATGTATGTGTATTTATGTGCGTTGCAGGTGGCTACCCCAGACGGCGGGGA
GCTGCCGCCGCCTTGCGTCGGCGACTTCTCGCCGGTACGGCCGCGCGAAG
ATGCCGACGTCCTGCGCCGTGTCTGCCACGTGCCCGTCCCAGCCGGGGCG
GCCGTGTTTTGGGACTATCGAACGCCTCATGCGAACGCCGCCAGGAATGC
TTCCGACCGCCCGCGGGAGGTTATTTACACAGGGTTTCTGCCCGACACGG
CCTGGAACCGTGCGTACGCCCACCAACAGCTGGATCGGCTCCTTCGCGGC
ATCCCTCCGGACGATCAGTGGATGGCGTTGTCCCCCGTCATTGCCGACGC
CGGGTGCGAAAACGGAGCTGCAAGCGGCGCCAGGGGTGCGCTCTCAGAAT
ATGAATGGTCGGCGCTGGGACGTCGCCTCGTCGGGCTCAGTGAGTGGTGA
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