mRNA_P-wetherbeei_contig54945.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54945.1.1
Unique NamemRNA_P-wetherbeei_contig54945.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54945.1.1 vs. uniprot
Match: UPI001472A34E (SDR family oxidoreductase n=1 Tax=Roseovarius confluentis TaxID=1852027 RepID=UPI001472A34E)

HSP 1 Score: 137 bits (345), Expect = 1.250e-37
Identity = 78/145 (53.79%), Postives = 100/145 (68.97%), Query Frame = 1
Query:   22 RVAISGATGGIGRATAHRFHQAGAVLVLIDLDRSALADLATEYGAQTSWHCCDQRDAASIEQTVAAVGAVDVFVNNAGVIIRKPLLDTTNSEISELLAVNMTGSIQMAIGMARHLVA---RRSGVIVNLSSQHAFIGAKDRGLYA 447
            RVAISGA G +G+A+A  F  AGA LVL+D D   L   A  +GA    H CDQ D +++ +T  A+GAVDVFVNNAG+++RK LLD T+ EI  +L VN+ GSI MA+GMAR + +   RR GVI NL++QHAF G   RG+YA
Sbjct:    2 RVAISGAGGDLGQASAEAFAAAGAELVLVDRDPRRLKATAERFGAVH--HVCDQSDRSAVARTCEAIGAVDVFVNNAGIMVRKNLLDHTDDEIDAVLNVNLRGSILMALGMARQMRSNKGRRGGVICNLATQHAFAGGGGRGIYA 144          
BLAST of mRNA_P-wetherbeei_contig54945.1.1 vs. uniprot
Match: A0A3N1KSM1_9PROT (L-xylulose reductase n=1 Tax=Stella humosa TaxID=94 RepID=A0A3N1KSM1_9PROT)

HSP 1 Score: 125 bits (315), Expect = 4.880e-33
Identity = 65/149 (43.62%), Postives = 100/149 (67.11%), Query Frame = 1
Query:    1 DMSFAGKRVAISGATGGIGRATAHRFHQAGAVLVLIDLDRSALADLATEYGAQTSWHCCDQRDAASIEQTVAAVGAVDVFVNNAGVIIRKPLLDTTNSEISELLAVNMTGSIQMAIGMARHLVARRSGVIVNLSSQHAFIGAKDRGLYA 447
            D+ FAG+RV ++GA  G+G A A  FH AGA LVL D++   LA +A  +GA+   H  DQ DAAS+ + V A G VDV ++NAGV++ KPLL+T+  E+  ++ +++ G+I++   +   +VAR  GVI+++ SQ AF G ++R +YA
Sbjct:    6 DLDFAGRRVLVTGAANGLGAAMAAAFHAAGATLVLADIEEGPLAAVAARHGAEA--HVYDQADAASVARLVEAAGPVDVLISNAGVLVAKPLLETSLEEVRRVIDIDLVGAIRLIQLVGAGMVARGRGVILSIGSQTAFSGGENRAVYA 152          
BLAST of mRNA_P-wetherbeei_contig54945.1.1 vs. uniprot
Match: UPI0016630613 (SDR family oxidoreductase n=1 Tax=Azorhizobium oxalatiphilum TaxID=980631 RepID=UPI0016630613)

HSP 1 Score: 124 bits (310), Expect = 2.870e-32
Identity = 73/144 (50.69%), Postives = 94/144 (65.28%), Query Frame = 1
Query:   22 RVAISGATGGIGRATAHRFHQAGAVLVLIDLDRSALADLATEYG-AQTSWHCCDQRDAASIEQTVAAVGAVDVFVNNAGVIIRKPLLDTTNSEISELLAVNMTGSIQMAIGMARHL-VARRSGVIVNLSSQHAFIGAKDRGLYA 447
            RVAISGA G IG ATA  F   GA LVLID D +AL+ L    G A      CDQ       + +  +G VDVFVNNAGV++RKPLL+T + +I+ +L VN+ G+ +MAIGMAR +  A R GVI+N+SS  AF+G   RG+Y+
Sbjct:   11 RVAISGAAGAIGAATARVFAARGASLVLIDRDEAALSGLRHALGEAVAQVVVCDQAAGEETARALREIGVVDVFVNNAGVLLRKPLLETDDDDIAHVLNVNVVGATRMAIGMARAMRAAGRPGVILNVSSHQAFVGGMGRGIYS 154          
BLAST of mRNA_P-wetherbeei_contig54945.1.1 vs. uniprot
Match: A0A5N7RJY6_9BURK (SDR family oxidoreductase n=1 Tax=Alcaligenaceae bacterium SAGV5 TaxID=2558245 RepID=A0A5N7RJY6_9BURK)

HSP 1 Score: 121 bits (303), Expect = 2.700e-31
Identity = 72/148 (48.65%), Postives = 99/148 (66.89%), Query Frame = 1
Query:   10 FAGKRVAISGATGGIGRATAHRFHQAGAVLVLIDLDRSALADLATEY--GAQTSWHCCDQRDAASIEQTVAAVGAVDVFVNNAGVIIRKPLLDTTNSEISELLAVNMTGSIQMAIGMARHLVARRSGVIVNLSSQHAFIGAKDRGLYA 447
            F G+ V +SGA GG+G+A A  F + GA LVL+D D + L  LAT    GA+T+ +  DQ D ASI Q +++VG +DVF+NNA  +IRKPLLD  + E+  L+ VN+TG+I MA+  AR +   R GVIVNL+SQ AF    +R +Y+
Sbjct:    5 FEGRSVVVSGACGGLGQALAQAFGERGARLVLLDRDAAELDALATRLDPGARTAVY--DQADPASIAQAMSSVGTIDVFINNAAYMIRKPLLDMEDGEVRHLIDVNLTGAILMAMAAARAM-RDRGGVIVNLASQLAFTSEHERAVYS 149          
BLAST of mRNA_P-wetherbeei_contig54945.1.1 vs. uniprot
Match: A0A512N654_9HYPH (3-oxoacyl-ACP reductase n=1 Tax=Reyranella soli TaxID=1230389 RepID=A0A512N654_9HYPH)

HSP 1 Score: 121 bits (303), Expect = 3.050e-31
Identity = 62/149 (41.61%), Postives = 96/149 (64.43%), Query Frame = 1
Query:    1 DMSFAGKRVAISGATGGIGRATAHRFHQAGAVLVLIDLDRSALADLATEYGAQTSWHCCDQRDAASIEQTVAAVGAVDVFVNNAGVIIRKPLLDTTNSEISELLAVNMTGSIQMAIGMARHLVARRSGVIVNLSSQHAFIGAKDRGLYA 447
            D+ F+G+R+ ++GA  G G A A  F+ AGA LVL D++   LA +A+ YGA    H  DQ D AS+E    A G VD+ +NNAGV++ KPLL+T+  E+   + ++  G++++   + R +V RR GVI+++ SQ AF G ++R +YA
Sbjct:    6 DLYFSGRRILVTGAANGFGEAMAGLFYAAGAQLVLADIEEQPLAAVASRYGAAA--HVFDQADPASVEDLAKAAGPVDILINNAGVLVAKPLLETSLEEVRRTVDIDFVGALRLIQLIGRGMVERRRGVILSIGSQTAFSGGENRAVYA 152          
BLAST of mRNA_P-wetherbeei_contig54945.1.1 vs. uniprot
Match: A0A349SDL3_9GAMM (Uncharacterized protein n=5 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A349SDL3_9GAMM)

HSP 1 Score: 117 bits (294), Expect = 7.760e-30
Identity = 62/143 (43.36%), Postives = 90/143 (62.94%), Query Frame = 1
Query:   19 KRVAISGATGGIGRATAHRFHQAGAVLVLIDLDRSALADLATEYGAQTSWHCCDQRDAASIEQTVAAVGAVDVFVNNAGVIIRKPLLDTTNSEISELLAVNMTGSIQMAIGMARHLVARRSGVIVNLSSQHAFIGAKDRGLYA 447
            +RV I+GA GGIG A A  F   GA LVL D +++ L +LAT  G        DQ     +E+  AA G +D+ +NNAG++   PL + +  EI++L+A+N+TG I +A  +A+ ++AR  GVIVN +SQ AF GA DR +Y+
Sbjct:   15 RRVLITGAAGGIGSAMARSFSAHGATLVLADRNQTGLDELATSVGGNPPCLAYDQSIPEEVEKLAAAAGPIDILLNNAGILAMSPLQEQSTEEITQLIAINLTGPILLATALAKGMIARGRGVIVNTASQLAFTGAMDRSVYS 157          
BLAST of mRNA_P-wetherbeei_contig54945.1.1 vs. uniprot
Match: A0A0J6CD72_9BORD (3-oxoacyl-[acyl-carrier-protein] reductase FabG n=1 Tax=Bordetella pseudohinzii TaxID=1331258 RepID=A0A0J6CD72_9BORD)

HSP 1 Score: 116 bits (291), Expect = 1.720e-29
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 1
Query:   10 FAGKRVAISGATGGIGRATAHRFHQAGAVLVLIDLDRSALADLATEYGAQTSWHCCDQRDAASIEQTVAAVGAVDVFVNNAGVIIRKPLLDTTNSEISELLAVNMTGSIQMAIGMARHLVARRSGVIVNLSSQHAFIGAKDRGLYA 447
            F GKR+ ISGA GG+GRA A  F   GA L+L+D     LA L  E G    +  CDQ   AS+ Q ++ +  +DV +NNAG ++RKPL DT   E+  LL VN+TG+I +A+ +A   + +  G IVN++SQ AF    DR +Y+
Sbjct:    6 FTGKRIVISGACGGLGRAFASEFAGQGARLMLLDQQADTLAALVGELGGGHDFAACDQAQPASLVQALSGLDQIDVLINNAGYMLRKPLFDTAIDEVGHLLGVNLTGAIILAM-IAAQRMKQAGGTIVNIASQLAFASEADRAIYS 150          
BLAST of mRNA_P-wetherbeei_contig54945.1.1 vs. uniprot
Match: A0A8J2Z7R9_9PROT (2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Caldovatus sediminis TaxID=2041189 RepID=A0A8J2Z7R9_9PROT)

HSP 1 Score: 115 bits (289), Expect = 3.760e-29
Identity = 64/149 (42.95%), Postives = 93/149 (62.42%), Query Frame = 1
Query:    1 DMSFAGKRVAISGATGGIGRATAHRFHQAGAVLVLIDLDRSALADLATEYGAQTSWHCCDQRDAASIEQTVAAVGAVDVFVNNAGVIIRKPLLDTTNSEISELLAVNMTGSIQMAIGMARHLVARRSGVIVNLSSQHAFIGAKDRGLYA 447
            D+ F G+RV ++GA  G G A A  FH  GA LVL D++  AL+ +A   GA+   +  DQ D AS+E   A  GAVDV VNNAG+++  PLL TT ++I  L+ V++ G I +   +   +VAR  GV++++ SQ AF G ++R +YA
Sbjct:    6 DLEFTGRRVLVTGAANGFGAAIARLFHAHGAGLVLADIEADALSAIAAGLGAEAVAY--DQADPASVEALAARAGAVDVLVNNAGILVAAPLLGTTPAQIRRLIDVDLVGVILLTRLVGAGMVARGRGVVLSIGSQTAFCGGENRAVYA 152          
BLAST of mRNA_P-wetherbeei_contig54945.1.1 vs. uniprot
Match: A0A848K0Y8_9HYPH (NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) n=3 Tax=Xanthobacter TaxID=279 RepID=A0A848K0Y8_9HYPH)

HSP 1 Score: 115 bits (288), Expect = 5.300e-29
Identity = 65/149 (43.62%), Postives = 93/149 (62.42%), Query Frame = 1
Query:    1 DMSFAGKRVAISGATGGIGRATAHRFHQAGAVLVLIDLDRSALADLATEYGAQTSWHCCDQRDAASIEQTVAAVGAVDVFVNNAGVIIRKPLLDTTNSEISELLAVNMTGSIQMAIGMARHLVARRSGVIVNLSSQHAFIGAKDRGLYA 447
            D+ F G+RV I+GA  G G A A  + + GA LVL DL+   L  +A+  GA+      DQ D AS+    A  G VDV VNNAG+++ KPLLDT  ++ + L+ V+  G + +  G+ R +V RR GVI+++SSQ AF G ++RG+YA
Sbjct:    6 DLDFTGRRVLITGAANGFGAAMAALYAEHGASLVLADLEAEPLRAVASRLGAEAL--VFDQGDLASVADLAAQAGEVDVLVNNAGILVAKPLLDTDLADAARLVNVDFLGVMALMQGIGRGMVERRCGVILSISSQTAFCGGENRGVYA 152          
BLAST of mRNA_P-wetherbeei_contig54945.1.1 vs. uniprot
Match: UPI000401712A (SDR family oxidoreductase n=1 Tax=Ottowia thiooxydans TaxID=219182 RepID=UPI000401712A)

HSP 1 Score: 115 bits (287), Expect = 6.650e-29
Identity = 63/142 (44.37%), Postives = 90/142 (63.38%), Query Frame = 1
Query:   19 KRVAISGATGGIGRATAHRFHQAGAVLVLIDLDRSALADLATEYGAQTSWHCCDQRDAASIEQTVAAVGAVDVFVNNAGVIIRKPLLDTTNSEISELLAVNMTGSIQMAIGMARHLVARRSGVIVNLSSQHAFIGAKDRGLY 444
            +R+AISG+TGG+GR  A RFH AG  L+LID +R+AL +L   +  +     CDQ  ++ I+    A   VDVF+NNA + +RKPL + +++E+  +L  N  G I MAI  AR ++ R+SGVIVN++SQ AF     R  Y
Sbjct:    5 RRIAISGSTGGLGRGIAQRFHDAGDSLLLIDTNRAALDELRAAHFPRADILICDQTHSSDIDAFSVAASDVDVFINNAAMTLRKPLEEMSHTEVRLVLDTNAAGPIAMAIAAARGMLMRKSGVIVNVTSQLAFKPTPGRATY 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54945.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001472A34E1.250e-3753.79SDR family oxidoreductase n=1 Tax=Roseovarius conf... [more]
A0A3N1KSM1_9PROT4.880e-3343.62L-xylulose reductase n=1 Tax=Stella humosa TaxID=9... [more]
UPI00166306132.870e-3250.69SDR family oxidoreductase n=1 Tax=Azorhizobium oxa... [more]
A0A5N7RJY6_9BURK2.700e-3148.65SDR family oxidoreductase n=1 Tax=Alcaligenaceae b... [more]
A0A512N654_9HYPH3.050e-3141.613-oxoacyl-ACP reductase n=1 Tax=Reyranella soli Ta... [more]
A0A349SDL3_9GAMM7.760e-3043.36Uncharacterized protein n=5 Tax=Gammaproteobacteri... [more]
A0A0J6CD72_9BORD1.720e-2943.843-oxoacyl-[acyl-carrier-protein] reductase FabG n=... [more]
A0A8J2Z7R9_9PROT3.760e-2942.952-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Caldov... [more]
A0A848K0Y8_9HYPH5.300e-2943.62NAD(P)-dependent dehydrogenase (Short-subunit alco... [more]
UPI000401712A6.650e-2944.37SDR family oxidoreductase n=1 Tax=Ottowia thiooxyd... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54945contigP-wetherbeei_contig54945:2..448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog113395.AXAI01000004_gene4344
PFAMsadh_short_C2
Model size447
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00029,RC00117,RC00154
KEGG koko:K00059,ko:K07535
KEGG ReactionR04533,R04534,R04536,R04543,R04566,R04953,R04964,R05582,R07759,R07763,R10116,R10120,R11671
KEGG Pathwayko00061,ko00333,ko00362,ko00780,ko01040,ko01100,ko01120,ko01130,ko01212,ko01220,map00061,map00333,map00362,map00780,map01040,map01100,map01120,map01130,map01212,map01220
KEGG ModuleM00083,M00540,M00572
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.02e-21
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1MU2T@1224|Proteobacteria,2TSDG@28211|Alphaproteobacteria,3JWEE@41294|Bradyrhizobiaceae
EC1.1.1.100
DescriptionEnoyl-(Acyl carrier protein) reductase
Cds size444
COG categoryIQ
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186819.3885272-CDS-P-wetherbeei_contig54945:1..4451683186819.3885272-CDS-P-wetherbeei_contig54945:1..445Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54945 2..445 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186819.401234-UTR-P-wetherbeei_contig54945:445..4481683186819.401234-UTR-P-wetherbeei_contig54945:445..448Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54945 446..448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54945.1.1prot_P-wetherbeei_contig54945.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54945 2..445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54945.1.1

>prot_P-wetherbeei_contig54945.1.1 ID=prot_P-wetherbeei_contig54945.1.1|Name=mRNA_P-wetherbeei_contig54945.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
MSFAGKRVAISGATGGIGRATAHRFHQAGAVLVLIDLDRSALADLATEYG
AQTSWHCCDQRDAASIEQTVAAVGAVDVFVNNAGVIIRKPLLDTTNSEIS
ELLAVNMTGSIQMAIGMARHLVARRSGVIVNLSSQHAFIGAKDRGLYA
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mRNA from alignment at P-wetherbeei_contig54945:2..448-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54945.1.1 ID=mRNA_P-wetherbeei_contig54945.1.1|Name=mRNA_P-wetherbeei_contig54945.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig54945:2..448- (Phaeothamnion wetherbeei SAG_119_79)
GACATGTCGTTCGCAGGAAAGCGGGTAGCCATCAGCGGAGCCACGGGTGG TATCGGACGCGCGACCGCCCATCGTTTTCATCAAGCCGGTGCGGTCCTGG TCCTGATCGACCTCGATCGGTCCGCGCTTGCGGACCTCGCCACGGAGTAC GGAGCGCAGACATCCTGGCATTGTTGCGATCAGCGCGATGCAGCGTCGAT CGAGCAGACGGTCGCAGCCGTCGGCGCAGTCGATGTCTTTGTCAACAATG CCGGCGTCATCATCCGCAAGCCCCTGCTCGACACGACAAACTCGGAAATA TCCGAACTGCTTGCGGTGAACATGACCGGCTCCATCCAGATGGCGATCGG CATGGCGCGGCACCTGGTTGCGCGAAGATCGGGCGTGATCGTCAATCTAT CCTCACAACACGCCTTCATCGGTGCGAAGGATCGAGGTCTCTACGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54945:2..448-

>mRNA_P-wetherbeei_contig54945.1.1 ID=mRNA_P-wetherbeei_contig54945.1.1|Name=mRNA_P-wetherbeei_contig54945.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig54945:2..448- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTTCGCAGGAAAGCGGGTAGCCATCAGCGGAGCCACGGGTGGTAT
CGGACGCGCGACCGCCCATCGTTTTCATCAAGCCGGTGCGGTCCTGGTCC
TGATCGACCTCGATCGGTCCGCGCTTGCGGACCTCGCCACGGAGTACGGA
GCGCAGACATCCTGGCATTGTTGCGATCAGCGCGATGCAGCGTCGATCGA
GCAGACGGTCGCAGCCGTCGGCGCAGTCGATGTCTTTGTCAACAATGCCG
GCGTCATCATCCGCAAGCCCCTGCTCGACACGACAAACTCGGAAATATCC
GAACTGCTTGCGGTGAACATGACCGGCTCCATCCAGATGGCGATCGGCAT
GGCGCGGCACCTGGTTGCGCGAAGATCGGGCGTGATCGTCAATCTATCCT
CACAACACGCCTTCATCGGTGCGAAGGATCGAGGTCTCTACGCG
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